BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28150.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896731 jgi|Araly1|896731|Al_scaffold_0005_697 1797 0.0
Ahg330485 jgi|Araly1|330485|fgenesh1_pm.C_scaffold_7002712 226 4e-58
> Ahg896731 jgi|Araly1|896731|Al_scaffold_0005_697
Length=1248
Score = 1797 bits (973), Expect = 0.0
Identities = 1161/1252 (93%), Gaps = 11/1252 (1%)
Strand=Plus/Plus
Query 20 ATGAAATC-ATCGTCATCGATTTTTCGTGAAACTTCAGAGAAAAAATCAGAGAGATGGAT 78
|||||| | ||| ||||| || ||||| |||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAA-CAATCATCATCAATATTTCGAGAAAATTCAGAGAAAAAATCAGAGAGATGGAT 59
Query 79 GATGATGAACATTGGAAGAttttctccatttttcttgtcttccttttgtataactctttt 138
||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 60 GATTATGAACATTGGAAGATCATCTCCATTTTTCTTGTCTTCTTTTTGTATAACTCTCTT 119
Query 139 cttcaccggtttctttgtttATCAGAATCCTTTTAAATCCATCGCTGATCAAAATGTTCT 198
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CTTCACCGGTTTCTTCGTTTATCAGAATCCTTTTAAATCCATTGCTGATCAAAATGTTCT 179
Query 199 TTCTTTCCAACCTCAAATCGATCCTGAGTGTGATTTGTTCAAGGGACATTGGGTTCCAGA 258
|||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 180 TTCTCTCCAACCTCAAATCGATCCTAAATGTGATTTATTCAAGGGACATTGGGTTCCAGA 239
Query 259 CAAAAGAGGATCTTTATACACAAACTCGAGCTGTGCTACGATTCCCGACTCGAAGAACTG 318
||||||||||||||| ||||||||||| |||||| |||| ||||| ||||| ||||||||
Sbjct 240 CAAAAGAGGATCTTTGTACACAAACTCAAGCTGTTCTACAATTCCTGACTCAAAGAACTG 299
Query 319 CATAAAACAAGGGAGACCCGACAAAGA-TTTCTTGTTCTGGAGATGGAAACCCGATGGTT 377
||||||||||||||||| ||| | || |||||||||||||||||||||||| |||||||
Sbjct 300 TATAAAACAAGGGAGACCAGAC-AGGAGTTTCTTGTTCTGGAGATGGAAACCAGATGGTT 358
Query 378 GCGATCTTCCGAGGTTTAATCCAAAGGCGTTTCTCAGTATGGTTCGAGGGAAGAAGATGA 437
|| ||||||| ||||||||||| |||||||||||| || | |||||||| ||||||||||
Sbjct 359 GCAATCTTCCTAGGTTTAATCCGAAGGCGTTTCTCGGTCTAGTTCGAGGCAAGAAGATGA 418
Query 438 ATTTTATTGGTGATTCTGTGGCTAGGAACCATATGGAATCTCTTCTTTGCTTGTTGTCAA 497
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTTTATTGGTGATTCTGTAGCTAGGAACCATATGGAATCTCTTCTTTGCTTGTTGTCAA 478
Query 498 TGGAAGAAACTCCTAAGGACATCTACAAGGATGGAGAAGATAGAAACAGGATTTGGTACT 557
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 479 TGGAAGAAACTCCTAAGGACATTTACAAAGATGGAGAAGATAGAAACAGGATTTGGTACT 538
Query 558 TTCCGAAGCACGATTTTACTCTCTCGACCTCGTGGACTAAGTTTCTTGTGGAGGAACGAG 617
||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 539 TTCCGAAACATGATTTTACTCTCTCGACTTCGTGGACTAAGTTTCTTGTAGAGGAACGAG 598
Query 618 AGAGAAGAGATAGTAACAATACAGGTACTGGATTGTTTGATCTAGATATCGGCAAGATCG 677
|||| || ||| ||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 599 AGAGGAGGGATGGTAACAATACAGGAACTGGATTGTTTGATCTAGACATTGGCAAGATCG 658
Query 678 ATGAAGGGTGGTTTAATGGTCTACCGAATACAGACATTGCTATTGTCTCGGCTGCTCATT 737
|||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 659 ATGAAGGGTGGTTTAAGGGGCTGCCGAATACAGACATTGCTATTGTCTCGGCTGCTCACT 718
Query 738 GGTTCTTCAGACCTATATTTATACATAGAGGAGATGAGACACTGGGTTGCATTTACTGTA 797
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTTCTTCAGACCGATATTTATACATAGAGGAGATGAGACACTGGGTTGCATTTACTGTA 778
Query 798 ACTTACCAAACATGACTCAGATTAGCCCGGAAGAAGGGTTTAAGCTTGTTTACTCAGCTG 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTTACCAAACATGACTCAGATTAGCCCGGAAGAAGGGTTTAAGCTTGTTTACTCAGCTG 838
Query 858 TCCTTAGGCAAATCAATGAGTGTGAGATGTGTAAGAA-AGATTTAGTGACGGTACTGAGG 916
|| ||| | ||| |||||||||||| ||||||| | | |||| |||||||||||||||
Sbjct 839 TCTTTAAGTTTATCGATGAGTGTGAGAAGTGTAAGGATA-ATTTGGTGACGGTACTGAGG 897
Query 917 ACTATTTCACCTGCGCATTTCGAGAATGGGACTTGGGACACCGGAGGAACTTGCAGCAGG 976
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 ACTATTTCACCTGCCCATTTCGAGAATGGGACTTGGGATACCGGAGGAACTTGCAGCAGG 957
Query 977 ACGAGTCCTTTCGGAGAAAACAAAATTGACCTGCAGAGCAATGAGATGAAGATCAGGAAA 1036
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 958 ACGAGTCCTTTTGGAGAAAACCAAATTGACCTGCAGAGCAATGAGATGAAGATCAGGAGA 1017
Query 1037 TCTCAGATTGAACAGCTTGAAGGTATA--A-CAAAACG-AGGCAACAAAGCAAAGAAGTT 1092
||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||||||
Sbjct 1018 TCTCAGATTGAACAGGTTGAAGGTATAGCAACAAAACGCAA-CAACAAAGCAAAGAAGTT 1076
Query 1093 TGCGGTATTGGATGTGACAAGGGTTATGCAGATGAGACCTGATGGGCATCCCAATGGTTA 1152
|||||| ||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||
Sbjct 1077 TGCGGTTTTGGATGTGACGAGGGTTATGCTGATGAGACCCGATGGGCATCCGAATGGTTA 1136
Query 1153 CTGGGGAAATAAATGGATGAAAGGTTATAATGATTGCGTGCATTGGTGTTTGCCCGGGCC 1212
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1137 CTGGGGAAATAAATGGATGAAAGGTTACAATGATTGCGTGCACTGGTGTTTGCCTGGGCC 1196
Query 1213 AATCGATGCGTGGAACGACTTTTTAATGGCGATAATTAGACAGTTAAGATGA 1264
||| ||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct 1197 AATTGATGCGTGGAATGAGTTTCTAATGGCGATAATTAGACAGTTAAGATGA 1248
> Ahg330485 jgi|Araly1|330485|fgenesh1_pm.C_scaffold_7002712
Length=1173
Score = 226 bits (122), Expect = 4e-58
Identities = 225/275 (82%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 227 TGTGATTTGTTC-AAGGGACATTGGGTTCCAGACAAAAGAGGATCTTTATACACAAACTC 285
||||| ||| || || ||||| ||| ||| |||| ||||||| || | ||| |||||||
Sbjct 202 TGTGACTTG-TCTAAAGGACAATGGATTCGAGACGAAAGAGGGTCGCTGTACTCAAACTC 260
Query 286 GAGCTGTGCTACGATTCCCGACTCGAAGAACTGCATAAAACAAGGGAGACCCGACAAAGA 345
| |||| |||| || ||||||||||| |||||| ||||||| |||||||| ||| |||
Sbjct 261 TACCTGTCCTACAATACCCGACTCGAAAAACTGCTTAAAACATGGGAGACCAAACACAGA 320
Query 346 TTTCTTGTTCTGGAGATGGAAACCCGATGGTTGCGATCTTCCGAGGTTTAATCC-AAAGG 404
||||||||||||||||||||||||||| || || || |||||||| || ||||| ||||
Sbjct 321 TTTCTTGTTCTGGAGATGGAAACCCGAAGGATGTGAACTTCCGAGATTCAATCCCAAAG- 379
Query 405 CGTTTCTCAGTA-TGGTTCGAGGGAAGAAGATGAATTTTATTGGTGATTCTGTGGCTAGG 463
| |||||| | | | ||||| || || ||||||||||| ||||||||||| || || ||
Sbjct 380 CTTTTCTC-GAACTTGTTCGCGGCAAAAAGATGAATTTCATTGGTGATTCAGTAGCCAGA 438
Query 464 AACCATATGGAATCTCTTCTTTGCTTGTTGTCAAT 498
||||| ||||| |||||||| ||| | ||||||||
Sbjct 439 AACCACATGGAGTCTCTTCTCTGCCTCTTGTCAAT 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5