BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28180.1
Length=2475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484602 jgi|Araly1|484602|fgenesh2_kg.5__594__AT3G28180.1 3362 0.0
> Ahg484602 jgi|Araly1|484602|fgenesh2_kg.5__594__AT3G28180.1
Length=2423
Score = 3362 bits (1820), Expect = 0.0
Identities = 2089/2218 (94%), Gaps = 21/2218 (1%)
Strand=Plus/Plus
Query 262 TCTCTGTTTCTTTATCATTCATGGCTCCAAATTCAGTAGCAGTGACAATGGAGAAGCCAG 321
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCTCTCTTTCTTTGTCATTCATGGCTCCAAATTCAGTAGCAGTGACAATGGAGAAGCCAG 282
Query 322 ACAACTTCTCTTTACTAGAGATCAACGGCTCAGATCCATCCTCATTCCCCGACAAACGTA 381
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||
Sbjct 283 ACAACTTCTCTTTACTAGAAATCAACGGTTCAGATCCATCCGCATTCCCCGACAAGCGTA 342
Query 382 AATCCATCAGTCCAAAACAATTCTCATGGTTCCTTCTTCTCAAAGCTCATAGACTCATCT 441
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct 343 AATCCATCAGTCCAAAGCAATTCTCATGGTTCCTCCTTCTCAAAGCTCATAGAGTCGTCT 402
Query 442 CGTGTCTCTCGTGGCTAGTCTCTTCGGTTAAAAAGCGAATCGCGTTCTCCGCGAAGAACA 501
|||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct 403 CGTGTCTCTCGTGGCTCGTATCTTCGGTTAAAAAGCGAATAGCTTTCTCCGCGAAGAACA 462
Query 502 TTAACGAAGAAGAAGATCCTAAAAGCAGAGGAAAACAAATGTACAGATTCATCAAAGCTT 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 TTAACGAAGAAGAAGATCCTAAAAGCAGAGGAAAACAAATGTACAGATTCATCAAAGCTT 522
Query 562 GTCTTGTCATCTCCATTATTGCCTTGTCCATAGAAATCGTTGCACATTTCAAGAAATGGA 621
||||||| |||||||| ||||||||||| ||||||||||| || |||| |||||||||||
Sbjct 523 GTCTTGTTATCTCCATAATTGCCTTGTCTATAGAAATCGTCGCGCATTACAAGAAATGGA 582
Query 622 ATCTTGATCTCATTAACCGACCGTCTTGGGAGGTTTACGGGCTTGTCGAATGGTCGTACA 681
|||||||||| || |||||||| || ||||||||||| || |||||||||||||| ||||
Sbjct 583 ATCTTGATCTTATAAACCGACCTTCGTGGGAGGTTTATGGCCTTGTCGAATGGTCTTACA 642
Query 682 TGGCTTGGCTCTCGTTTCGATCCGATTACATCGCTCCTCTTGTCATCAGTCTCTCCAGAT 741
|||||||||| ||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 643 TGGCTTGGCTTTCGTTTCGATCCGATTATATTGCTCCTCTTGTCATAAGTCTCTCAAGAT 702
Query 742 TCTGCACTGTACTCTTTTTGATTCAGTCTCTTGATCGGTTAGTCCTCTGTCTCGGTTGCT 801
|||||||||| ||||| ||||| |||||||||||||||||||| |||||| | |||||||
Sbjct 703 TCTGCACTGTCCTCTTCTTGATCCAGTCTCTTGATCGGTTAGTACTCTGTTTTGGTTGCT 762
Query 802 TTTGGATCAAATTTAAAAAGATCGAACCTAAGCTCACCGAAGAATCTATCGATTTAGAAG 861
| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 763 TCTGGATCAAATTTAAAAAGATCGAACCTAAGCTCAAAGAAGAATCTATCGATTTGGAAG 822
Query 862 ACCCCTCCAGTTTCCCAATGGTCCTTATTCAGATCCCAATGTGCAACGAACGAGAGGTGT 921
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 823 ATCCCTCCAGTTTCCCAATGGTCCTTGTTCAGATCCCAATGTGCAACGAACGAGAGGTAT 882
Query 922 ATGAACAATCAATAGGAGCAGCTTCACAACTTGATTGGCCAAAAGATAGGATCTTAATTC 981
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 883 ATGAACAATCAATAGGAGCAGCATCACAACTTGATTGGCCAAAAGATAGGATCTTAATTC 942
Query 982 AAGTAT-TAGATGATTCAGACGATCCAAATTTACAGCTTTTGATCAAAGAAGAAGTATCG 1040
|||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 943 AAGT-TCTAGACGATTCAGACGATCCAAATTTACAACTTTTGATCAAAGAAGAAGTATCG 1001
Query 1041 GTTTGGGCCGAAAAAGGCGTAAACATAATTTA-CAGGCATAGGTTGATCAGAACTGGTTA 1099
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1002 GTTTGGGCCGAAAAAGGCGTAAACATAATTTATC-GGCATAGGTTGATCAGAACTGGTTA 1060
Query 1100 CAAAGCTGGCAATTTGAAATCAGCCATGACTTGTGATTACGTTAAAGATTACGAGTTTGT 1159
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1061 CAAAGCTGGGAATTTGAAATCAGCCATGACTTGTGACTACGTTAAAGATTACGAGTTCGT 1120
Query 1160 GACTATCTTCGACGCAGATTTCACACCAAATCCTGATTTCCTCAAGAAGACTGTTCCTCA 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TACTATCTTCGACGCAGATTTCACACCAAATCCTGATTTCCTCAAGAAGACTGTTCCTCA 1180
Query 1220 TTTCAAGGGTAATCCAGAGCTAGGGTTGGTCCAAGCAAGGTGGTCATTTGTGAACAAAGA 1279
||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1181 TTTCAAGGGAAATCCAGAGCTAGGACTGGTCCAAGCAAGGTGGTCATTCGTGAACAAAGA 1240
Query 1280 TGAGAATCTCCTCACGAGGCTACAAAACATAAACTTATGTTTCCACTTCGAAGTAGAACA 1339
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1241 TGAGAATCTCCTCACAAGGCTACAAAACATAAACTTATGCTTCCACTTCGAAGTAGAACA 1300
Query 1340 ACAAGTGAACGGTGTGTTTCTCAA-TTTCTTCGGATTCAATGGAACCGCTGGAGTATGGA 1398
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||
Sbjct 1301 ACAAGTGAACGGTGTGTTTCTCAACTTT-TTCGGTTTCAATGGAACCGCTGGAGTCTGGA 1359
Query 1399 GGATCAAGGCATTGGAAGAATCCGGCGGATGGCTCGAGAGAACCACCGTGGAAGATATGG 1458
| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1360 GAATCAAGGCATTGGAAGAATCCGGCGGGTGGCTCGAGAGAACGACTGTGGAAGATATGG 1419
Query 1459 ATATCGCGGTTAGAGCGCATCTCAACGGCTGGAAGTTTATTTACCTTAATGATGTTGAAG 1518
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1420 ATATCGCGGTTAGAGCGCATCTTAACGGCTGGAAATTTATTTACCTCAATGATGTTGAAG 1479
Query 1519 TCACTTGCGAGTTGCCAGAGTCTTATGAAGCTTACAAGAAGCAACAACATCGTTGGCATT 1578
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TCACTTGTGAGTTGCCTGAGTCTTATGAAGCTTACAAGAAGCAACAACATCGTTGGCATT 1539
Query 1579 CCGGTCCTATGCAGCTGTTCCGGTTATGCCTTCCTTCAATTATCAAATCAAAGATATCGG 1638
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1540 CGGGTCCTATGCAGCTGTTCCGGTTATGCCTTCCTTCCATAATCAAATCAAAGATATCGG 1599
Query 1639 TTTGGAAGAAGGCGAATTTGATCTTCCTTTTCTTTCTTCTAAGGAAGCTTATTCTACCAT 1698
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1600 TTGGGAAGAAGGCGAATTTGATCTTCCTTTTCTTTCTTCTAAGGAAGCTTATTCTACCTT 1659
Query 1699 TTTACTCATTCACACTCTTTTGCATTATACTTCCATTGACAATGTTCATACCCGAAGCCG 1758
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1660 TTTACTCATTCACACTCTTTTGCATCATACTTCCATTGACAATGTTCATACCCGAAGCCG 1719
Query 1759 AGCTTCCGTTGTGGATCATCTGCTATGTTCCTATCTTCATTTCGCTTCTCAACATTCTCC 1818
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1720 AGCTTCCGTTGTGGATCATCTGTTATGTTCCTATCTTCATTTCGCTTCTCAACATTCTCC 1779
Query 1819 CGTCACCTAAATCTTTCCCTTTCTTAGTCCCTTACCTTCTTTTCGAAAACACAATGTCAA 1878
|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1780 CGTCGCCTAAATCTTTCCCTTTCTTAGTCCCTTACCTCCTTTTCGAAAACACTATGTCGA 1839
Query 1879 TAACCAAGTTCAACGCCATGATCTCCGGGCTGTTTCAGTTTGGATCGGCTTACGAGTGGG 1938
||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||
Sbjct 1840 TAACCAAGTTCAACGCCATGATCTCCGGGCTATTCCAGCTCGGATCGGCTTACGAGTGGG 1899
Query 1939 TTGTGACGAAGAAAACCGGGAGATCATCGGAGTCCGATTTGCTAGCGTTTGCTGAAAAGG 1998
||||||| |||||||||||||||||||| || ||||| |||||||| |||||||||||||
Sbjct 1900 TTGTGACAAAGAAAACCGGGAGATCATCCGAATCCGACTTGCTAGCATTTGCTGAAAAGG 1959
Query 1999 AAGAGAAGTTGCATAGGAGAAACTCGGAGTCAGGTTTGGAGCTTCTGAGCAAACTTAAGG 2058
||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1960 AAGAGAAGTTGCATAGGAGAAACTCGGAGTCCGGGTTGGAGCTTCTTAGCAAACTTAAGG 2019
Query 2059 AGCAAGAGACAAATCTTGTAGGGCAAGAAACCGTGAAGAAGAGCCTTGGAGGGCTAATGA 2118
|||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2020 AGCAAGAGACCAACCTTTTAGCGCAAGAAACCGTGAAGAAGAGCCTTGGAGGGCTAATGA 2079
Query 2119 GGCCGAAGAACAAGAAGAAGACGAACATGGTGTTCAAGAAAGAGCTCGGGCTTGCGTTCT 2178
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2080 GGCCTAAGAACAAGAAAAAGACGAACATGGTGTTCAAGAAAGAGCTTGGGCTTGCTTTCT 2139
Query 2179 TGCTGCTAACCGCAGCTGCAAGGAGCTTTCTATCGGCGCACGGTCTTCACTTCTACTTTT 2238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2140 TGCTGCTAACCGCAGCTGCAAGGAGCTTTCTATCGGCGCACGGTCTTCACTTCTACTTCT 2199
Query 2239 TGTTGTTTCAGGGACTGTCTTTCTTGGTTGTAGGGTTGGATTTGATCGGAGAACAGATCA 2298
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2200 TGCTGTTTCAGGGACTGTCTTTCTTAGTTGTAGGGTTGGATTTGATCGGAGAACAGATCA 2259
Query 2299 GCTAGACACACACAAAACCAAGACAGAGAACAAGGaaaaaaaTACCGTTTATATTCACTA 2358
||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2260 GCTAGACTCACACTAAATCAAGACAGAGAACAAGGAAACAAATACCGTTTATATTCGCTA 2319
Query 2359 tttttttgtttgttttttaaattcttttcccttt-ttatatgtgggttttatacataatt 2417
|||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 2320 TTTTTT------------A--TTCTTTTCCCTTTCTTATATGTGGGTTTTATACATAATT 2365
Query 2418 ttCAAGAACTTATAATGTCCAGTTTCAGATAAATGAATTGAAACGAATTTGTTATATG 2475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 TTCAAGAACTTATAATGTCCAGTTTCAGATAAATGAATTGAAACGAATTTGTTATATG 2423
Score = 274 bits (148), Expect = 2e-72
Identities = 204/229 (89%), Gaps = 11/229 (5%)
Strand=Plus/Plus
Query 1 AGTTGGTTCACTTCAGCACATGATCCTCGtctctc----tttctttctctctctcAATCA 56
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1 AGTTGGTTCACTTGAGCACATGATCCTCGTCTCTCTTTTTTTCTCTCTCTCTCTCAATCA 60
Query 57 CAAGTTTCAGTTACACAGCTGAACCCAAAGTATCTCACATTCTGATCTAATCAGAACACT 116
||||||||||||||| ||||||| ||||||||||||| ||||||||| | || |||
Sbjct 61 CAAGTTTCAGTTACA-AGCTGAA-CCAAAGTATCTCAGATTCTGATC---T--GATTACT 113
Query 117 GTTTTGTCTGTGTAACATAAACAAACGATCCTGTTTTTATGGAAAATTTAATGAAACAGT 176
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GTTTTGTCTGTGAAACAAAAACAAACGATCCTGTTTTTATGGAAAATTTAATGAAACAGT 173
Query 177 GACGATTCTTCTACACTTCTTTATAATGACAAACATTTCATAGTACCAA 225
||||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 174 GACGACTCAAATCCTCATCTTTATAATGACAAACATTTCATAGTACCAA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93283010005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5