BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28190.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322924 jgi|Araly1|322924|fgenesh1_pm.C_scaffold_5000468           532    4e-151


> Ahg322924 jgi|Araly1|322924|fgenesh1_pm.C_scaffold_5000468
Length=384

 Score =  532 bits (288),  Expect = 4e-151
 Identities = 323/340 (95%), Gaps = 1/340 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAATCTGGAGCTATATGGGGAAAACATCAGTATTCATATTTGGTCTTGGATTCTAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGGAATCTGGAGCTATATGGGGAAAACATCAGTATTCATATTTGGTCTTGGATTCTAT  60

Query  61   ACTTATGCTGCTTTATTCTCTAACTCAGATAATAAGATGCTTATGACTCAGTTGGAATCC  120
            ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ACGCATGCTGCTTTATTCTCTAATTCAGATAATAAGATGCTTATGACTCAGTTGGAATCC  120

Query  121  TTCAAAGAGACGGTTAAGGTTCAAATGGAGTCGTTTACAGAGCCATCTAAAGCTCAAATG  180
            ||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct  121  TTCAAAGAGACTGTTAAGGTTCAGATGGAGTCCTTTAAAGAGCCATCTAAAGCTCAAATG  180

Query  181  GCTAAGTATAGAGAAATGGAACAAAAGATGGAAGCTAAGTATAGAGAAATGGAAAATAAG  240
            |||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||||||
Sbjct  181  GCTAAGTATAGAGAAATGGACCAAAAGTTTGAAGCTAAGTATAAAGAAATGGAAAATAAG  240

Query  241  TTGGACAATCTTGTGAAGTTGTCTATGACTCAAATCTCCGAGTTGAAAGTAACTAGAGAG  300
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  241  TTGGACAATCTTGTGAAGTTGTCTATGACTCAAATCTCCGAATTGAAAGTAACTAGAGAG  300

Query  301  AAGTGTTGCAATGATTTCTGGAAATCAAGAAG-TACATAG  339
            ||||||||||||||||| |||||| ||||||  |||||||
Sbjct  301  AAGTGTTGCAATGATTTGTGGAAAGCAAGAAAATACATAG  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5