BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28200.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484603 jgi|Araly1|484603|fgenesh2_kg.5__595__AT3G28200.1 1661 0.0
Ahg947764 jgi|Araly1|947764|scaffold_703993.1 538 3e-152
Ahg932567 jgi|Araly1|932567|scaffold_400555.1 252 5e-66
> Ahg484603 jgi|Araly1|484603|fgenesh2_kg.5__595__AT3G28200.1
Length=1039
Score = 1661 bits (899), Expect = 0.0
Identities = 1007/1056 (95%), Gaps = 19/1056 (2%)
Strand=Plus/Plus
Query 1 ctcttctcaacaatggcttcactcaaatctctcttcctcctcttcctcttcttcttcaCA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTCTTCTCAACAATGGCTTCACTCAAATCTCTCTCCCTCCTCTTCCTCTTCTTCTTCACA 60
Query 61 GCTCAATCTCGCTTAACCACAAACTTCTACTCAAAAACATGCCCAAGATTCCTCGACATC 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GCTCAATCTCGCTTAACCACAAACTTCTACTCAAAGACATGCCCAAGATTCCTCGACAT- 119
Query 121 A-TCCGTGACACAATCACAAACAAACAAATCACTAATCCCACCACCGCAGCCGCCGTTAT 179
| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 120 AGTCCGTGACACAATCACAAACAAACAAATCACAAATCCAACCACCGCAGCCGCCGTTAT 179
Query 180 CCGTCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACGCCTCCGTCCTCATCTCCTC 239
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 180 CCGTCTCTTCTTCCACGATTGTTTCCCTAACGGTTGCGACGCCTCCGTCCTCCTCTCCTC 239
Query 240 CACCGCCTTCAACACCGCAGAACGTGACTCTTCCATCAACCTCTCACTCCCCGGAGACGG 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 240 CACCGCCTTCAACACCGCAGAACGTGACTCCTCCATCAACCTCTCACTCCCCGGAGATGG 299
Query 300 TTTCGACGTCATTGTCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCGACGTCATTGTCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTC 359
Query 360 TTGCTCAGACATCATCTCCGTCGCAACACGTGATCTTCTAATCACCGTCGGTGGTCCTTA 419
||| || ||||| ||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 360 TTGTTCCGACATAATCTCTGTCGCAACACGTGATCTTTTGATCACCGTCGGTGGTCCTTA 419
Query 420 CTACGACGTTTTCCTCGGCCGTCGTGATTCAAGAACGTCGAAATCTTCTCTTTTAACCGA 479
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 CTACGACGTTTTCCTCGGCCGTCGTGATTCAAGAACTTCTAAATCTTCTCTTTTAACCGA 479
Query 480 TCTTCTTCCTCTTCCTTCCACACCAATCTCTAAAATCATTCAACAGTTTGAATCAAAAGG 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTTCTTCCTCTTCCTTCTACACCAATCTCTAAAATCATTCAACAGTTTGAATCAAAAGG 539
Query 540 TTTCACTGTTCAAGAAATGGTTGCTCTTAGTGGAGCACATTCTATAGGGTTTTCACATTG 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTCAATGTTCAAGAAATGGTTGCTCTTAGTGGAGCACATTCTATAGGGTTTTCACATTG 599
Query 600 TAAAGAGTTTGTGGGTCGGGTGGGTCGGAATAATACCGGGTATAACCCGAGATTCGCAGT 659
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 TAAAGAGTTTGTGGGTCAGGTGGGTCGGAATAATACCGGGTATAACCCGAGATTCGCGGT 659
Query 660 GGCTTTGAAGAAAGCTTGTGCTAATTACCCTAAAGATCCGACTATCTCTGTGTTTAATGA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GGCTTTGAAGAAAGCTTGTGCTAATTACCCTAAAGATCCGACTATTTCTGTGTTTAATGA 719
Query 720 TATTATGACTCCTAATAAGTTTGATAATATGTATTATCAGAATCTTAAAAAGGGTCTTGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATTATGACTCCTAATAAGTTTGATAATATGTATTATCAGAATCTTAAAAAGGGTCTTGG 779
Query 780 GTTACTTGAATCGGATCATGGATTATATTCTGACCCTAGAACCAGATA-TTTTGTTGATC 838
||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||
Sbjct 780 GTTACTTGAATCGGATCATGGGTTATATTCTGACCCGAGAACCAGA-ACTTTTGTTGATC 838
Query 839 TTTATGCTAAGAATCAAGATCTGTTTTTCAAAGATTTTGCTAAAGCTATGCAGAAGTTGA 898
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 839 TTTATGCTAAGAATCAAGATCTGTTTTTCAAAGATTTTGCTAGAGCTATGCAGAAGTTGA 898
Query 899 GTCTTTTTGGTATACAGACTGGTAGAAGAGGAGAGATCCGAAGAAGGTGCGATGCTATTA 958
|||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 GTCTTTATGGTATAAAGACTGGTAGAAGAGGAGAGATCCGAAGAAGGTGTGATGCTATTA 958
Query 959 ATTGAGTTTATGTTTTTAATTTATTTAATTTTTGGGTTATATTGGATTGTGAATCTTCTG 1018
||||||||||||||| | || |||| ||||| | |||||||||||||||||
Sbjct 959 ATTGAGTTTATGTTT--A-TT-ATTT--TTTTT---T------GGATTGTGAATCTTCTG 1003
Query 1019 AGTTATTACACTCATATGTTTTTGTGTAATGTAAAA 1054
||| ||||||||||||||||||||||||||||||||
Sbjct 1004 AGTAATTACACTCATATGTTTTTGTGTAATGTAAAA 1039
> Ahg947764 jgi|Araly1|947764|scaffold_703993.1
Length=1027
Score = 538 bits (291), Expect = 3e-152
Identities = 700/894 (78%), Gaps = 41/894 (5%)
Strand=Plus/Plus
Query 85 TTCTACTCAAAAACATGCCC-AAGATTCCTCGACATCATCCGTGACACAATCACAAACAA 143
|||||||| ||| | ||||| || ||||||||||| || || || || ||||| |||||
Sbjct 126 TTCTACTCCAAATCTTGCCCTAA-TTTCCTCGACATTATTCGCGAAACCATCACCAACAA 184
Query 144 ACAAATCACTAA-TCCCACCACCGCAGCCGCCGTTATCCGTCTCTTCTTCCACGACTGTT 202
||| ||| | || ||| || ||||| ||||| | | |||| ||||||||||||||||| |
Sbjct 185 ACAGATCTC-AACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGCT 243
Query 203 TCCCTAACGGCTGCGACGCCTCCGTCCTCATCTCCTCCACCGCCTTCAACACCGCAGAAC 262
||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 244 TCCCTAACGGCTGCGACGCCTCCGTCCTCGTTTCCTCAACCGCTTTCAACACCGCAGAAC 303
Query 263 GTGACTCTTCCATCAACCTCTCACTCCCCGGAGACGGTTTCGACGTCATTGTCCGAGCCA 322
| || || || ||||| ||||| || || || ||||| ||||||||| | ||||||| |
Sbjct 304 GCGATTCATCAATCAATCTCTCTCTTCCGGGCGACGGATTCGACGTCGTAATCCGAGCTA 363
Query 323 AAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTCTTGCTCAGACATCATCTCCGTCG 382
|||||||||| ||||||||||||||||||||||| |||||||| || |||||| ||| ||
Sbjct 364 AAACAGCTCTAGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGCCGCCG 423
Query 383 CAACACGTGATCTTCTAATCACCGTCGGTGGTCCTTACTACGACGTTTTCCTCGGCCGTC 442
| ||||||||| || ||||||||||||||||||||||||| | | |||||||||||
Sbjct 424 CGGTACGTGATCTACTCGTCACCGTCGGTGGTCCTTACTACGAAATCTCCCTCGGCCGTC 483
Query 443 GTGATTCAAGAA-CGTCGAAATCTTCTCTTTTAACCGATCTTCTTCCTCTTCCTTCCACA 501
| ||||| | | |||||||| ||||| | ||||||| || || ||||| || |
Sbjct 484 GCGATTCTCGTGTC-TCGAAATCGTCTCTCGTCTCCGATCTCCTCCCACTTCCGTCGATG 542
Query 502 CCA-ATCTCTAAAATCATTCAA-CAGTTT-GAATCAAAAGGTTTCACTGTTCAAGAAATG 558
| | ||||| || |||| | | || || | || | ||| ||| | ||||||||||||
Sbjct 543 C-AGATCTCGAAGCTCAT-CGATCAATTCAGC-TCCAGAGGCTTCTCCGTTCAAGAAATG 599
Query 559 GTTGCTCTT-AGTGGAGCACATTCTATAGGGTTTTCACATTGTAAAGAGTTTG-TGGGTC 616
|||||| || || || || || | || || || |||||||| |||||||| | |
Sbjct 600 GTTGCT-TTGAGCGGTGCTCACACCATCGGATTCTCACATTGCAAAGAGTTCACTAAC-C 657
Query 617 GGGTGGGTCGGAATAATA---CCGGGTATAACCCGAGATTCGCAGTGGCTTTGAAGAAAG 673
|||| | |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 658 GGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTGGCTTTGAAGAAAG 717
Query 674 CTTGTGCT-AATTACCCTAAA-GATCCGACTATCTCTGTGTTTAATGATATTATGACTCC 731
||||| | |||||| ||| || || || |||||||| || || || | ||||||||
Sbjct 718 CTTGTT-TGAATTACAG-AAATGACCCTACGATCTCTGTCTTCAACGACGTGATGACTCC 775
Query 732 TAATAAGTTTGATAATATGTATTATC-AGAATCTTAA-AAAGGGTCTTGGGTTACTTGAA 789
|| || || ||||||||||||| || ||||| || ||||| ||| ||||||||||||
Sbjct 776 AAACAAATTCGATAATATGTATT-TCCAGAATATTCCGAAAGG-TCTCGGGTTACTTGAA 833
Query 790 TCGGATCATGGATTATAT-TCTGACCCTAGAACCAGATAT-TTTGTTGATCTT-TATGCT 846
|||||||| || |||| | || ||||| |||||| | | |||||||| || || ||
Sbjct 834 TCGGATCACGGGTTAT-TCTCCGACCCGAGAACCCG-TCCGTTTGTTGAG-TTATACGCG 890
Query 847 A-AGAATCAAGATCTG-TT-TTTCAAAGATTTTGCTAAAGCTATGCAGAAGTTGAGTCTT 903
| ||| |||| || | || ||| ||||| || || ||||||||||||||||||||||
Sbjct 891 AGAGAC-CAAGCTC-GATTCTTT-AAAGACTTCGCCGGAGCTATGCAGAAGTTGAGTCTT 947
Query 904 TTTGGTATACAGACTGGTA-GAAGAGGAGAGATCCGAAGAAGGTGCGATGCTAT 956
||| | ||| || | | |||||||||||||| ||||||| ||||||||
Sbjct 948 CACGGTGTTTTGACCGG-ACGGCGAGGAGAGATCCGACGAAGGTGTGATGCTAT 1000
> Ahg932567 jgi|Araly1|932567|scaffold_400555.1
Length=627
Score = 252 bits (136), Expect = 5e-66
Identities = 207/242 (86%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 169 GCCGCCGTTATCCGTCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGACGCCTCCGTC 228
||||| | | |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GCCGCAGCTCTCCGCCTCTTCTTCCACGACTGTTTCCCTAACGGCTGCGATGCCTCCGTC 300
Query 229 CTCATCTCCTCCACCGCCTTCAACACCGCAGAACGTGACTCTTCCATCAACCTCTCACTC 288
||| | ||||| ||| | ||||||||||| ||||| || || || |||||||||| |||
Sbjct 301 CTCGTTTCCTCAACCACTTTCAACACCGCCGAACGCGATTCATCAATCAACCTCTTTCTC 360
Query 289 CCCGGAGACGGTTTCGACGTCATTG-TCCGAGCCAAAACAGCTCTCGAACTCGCTTGTCC 347
||||| ||||| ||||||||| | | |||| || ||||||||||| ||||||||||||||
Sbjct 361 CCCGGCGACGGATTCGACGTCGT-GATCCGCGCTAAAACAGCTCTAGAACTCGCTTGTCC 419
Query 348 CAACACAGTTTCTTGCTCAGACATCATCTCCGTCGCAACACGTGATCTTCTAATCACCGT 407
||||||||| |||||||| || |||||| ||||||| ||||||||| || |||||||
Sbjct 420 CAACACAGTCTCTTGCTCTGATATCATCGCCGTCGCGGTACGTGATCTCCTCGTCACCGT 479
Query 408 CG 409
||
Sbjct 480 CG 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5