BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28210.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347189 jgi|Araly1|347189|fgenesh1_pg.C_scaffold_5000581 822 0.0
> Ahg347189 jgi|Araly1|347189|fgenesh1_pg.C_scaffold_5000581
Length=558
Score = 822 bits (445), Expect = 0.0
Identities = 518/554 (94%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 85 AGGAGGAACAGAAGCGTTTCCTGATCTTGGAGAGCATTGCCAAGACCCTGATTGCAAATT 144
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 6 AGGAGGAACAGAAGCGTTTCCTGATCTTGGAGAGCATTGCCAAAACCCTGATTGCAAATT 65
Query 145 ACTCGATTTTCTCCCTTTTACTTGCGACGGCTGCAAATTGGTGTTTTGTTTGGAGCATAG 204
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 66 ACTCGATTTTCTCCCTTTTACTTGTGACGGCTGCAAATTGGTGTTTTGTTTGGAGCATAG 125
Query 205 ATCATACAAGTCACATAACTGTCCGAAATCCGATCATGGGAGCAGAACGGTTTCCATCTG 264
|||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 126 ATCATACAAGTCACATAATTGTCCGAAATCCGATCACGGAAGCAGAACAGTTTCCATCTG 185
Query 265 TGAAACATGTTCAATAGCGATTGAAACAACTGGTTTTGATGAAAAAGGAATCAAATCTTT 324
|||||||||||| ||||| || |||||||||||||||| |||| ||||||||||||||||
Sbjct 186 TGAAACATGTTCTATAGCTATCGAAACAACTGGTTTTGGTGAAGAAGGAATCAAATCTTT 245
Query 325 GCTTGAGAAACACGAAAGATCCGGAGATTGTGATCCAAACAAGAAAAAGAAACCAACGTG 384
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 246 GCTTGAGAAACACGAAAGATCCGGAGATTGTGACCCGAACAAGAAAAAGAAACCAATATG 305
Query 385 TCCTGTAAAACGTTGCAAAGAGATTCTGACTTTTGCGAATAACCTTACTTGCAAATATTG 444
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 306 TCCTGTAAAACGTTGCAAAGAGATTCTGACTTTTGCAAATAACCTTACTTGCAAAGATTG 365
Query 445 TGGAGTCAAGTTCTGTTTGAAACACCGGTTTCCGACAGATCATGTCTGTAACAAGAAGAT 504
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 366 TGGAATCAAGTTCTGTTTAAAACACCGGTTTCCGACAGATCATGTTTGTAACAAGAAAAC 425
Query 505 CATTAA-TACCGCGGGAACAAGCTCGAGGTGGAACGAGAGGTTTATGGAAGCTTTGAGTT 563
||| || |||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 426 CAT-AACTACCGCAAGAACAAGCTCGCGGTGGAACGAGAGGTTTATGGAAGCTTTAAGTT 484
Query 564 TAAGAAACCAGAAAGGGTGTGGAAGAGGGAGCTCTGTTTCATCAAAATCTTCACCATCAG 623
| ||||| ||||||| ||||||||||| |||||||||||||||| |||| |||||||||
Sbjct 485 TGAGAAATGAGAAAGGCTGTGGAAGAGGAAGCTCTGTTTCATCAAGATCTCCACCATCAG 544
Query 624 TTAGATCGTTTTAG 637
||||||| ||||||
Sbjct 545 TTAGATCCTTTTAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5