BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28223.1 Length=1408 Score E Sequences producing significant alignments: (Bits) Value Ahg936602 jgi|Araly1|936602|scaffold_500793.1 143 4e-33 Ahg935615 jgi|Araly1|935615|scaffold_403603.1 128 1e-28 > Ahg936602 jgi|Araly1|936602|scaffold_500793.1 Length=1113 Score = 143 bits (77), Expect = 4e-33 Identities = 169/211 (80%), Gaps = 16/211 (8%) Strand=Plus/Plus Query 752 AGAAGAGCTTTCACAACATCCCAAGGATCTCTTATGTATATGAA-A-ATTATCAATGAAG 809 |||||| ||| |||||| || ||||||| ||| ||||||||||| | ||| || || | Sbjct 662 AGAAGAACTTGCACAACTTCTCAAGGATATCTCATGTATATGAATATATTCTCTAT-ACC 720 Query 810 AAAAAGATGATGGAAGTTTAG-GGCTTAAGTTATGTGTATGGAGGTTA-AAGAG-TGGGA 866 |||| | |||||||| ||||| || | |||||||||||||||||| || || || ||| | Sbjct 721 AAAA-GTTGATGGAAATTTAGAGGAT-AAGTTATGTGTATGGAGGCTAGAA-AGCTGGCA 777 Query 867 AATGG-GAAATAGTATCTGAAATATC-TCCGGCTTGTATCAAGAGTGGTTTAGATTACT- 923 | ||| || ||||||| ||||| || | || || ||| |||| ||||| ||||| | Sbjct 778 A-TGGCGAC-TAGTATCCGAAATCTCATT-GGATTCTATTAAGACCGGTTTCGATTA-TA 833 Query 924 TTCCGTTGGCAATAAACCCTTTTGATGCTAA 954 ||||||||| ||||||||||||||||||||| Sbjct 834 TTCCGTTGGGAATAAACCCTTTTGATGCTAA 864 > Ahg935615 jgi|Araly1|935615|scaffold_403603.1 Length=774 Score = 128 bits (69), Expect = 1e-28 Identities = 148/186 (80%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 86 GATCTCGTGGTAAA-TATATTAGCGAGATTACC-ACTAAAGAGCATCACAGCTTTCACCT 143 ||||| ||| ||| |||| ||||||| ||||| | | |||||||| ||| ||| || || Sbjct 39 GATCTATTGG-AAATTATACTAGCGAGGTTACCGA-TTAAGAGCATAACAACTTGCAACT 96 Query 144 TGGTTTGCAAGGAATGGAAATCAATAGTCGAATCTCAATATCTACACGAACTTTTTATGT 203 |||||||||||||||||||||||||||| |||||| | | ||| | || ||||| | | Sbjct 97 TGGTTTGCAAGGAATGGAAATCAATAGTGGAATCTGAGTTTCTCCGGGAGCTTTTCCTTT 156 Query 204 CTCATCATCAAGACTCGCATCCTTCATGGTCACTCATGTGCAGAGAAACTCATAAAGAAG 263 |||| ||| || | |||||| |||| ||||| ||||| |||| ||| || | ||||||| Sbjct 157 CTCACCATAAAAAATCGCATTCTTCGTGGTCGCTCATATGCACCGAATCTAAGAAAGAAG 216 Query 264 TCATTG 269 || ||| Sbjct 217 TC-TTG 221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52640718590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5