BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28223.1

Length=1408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936602 jgi|Araly1|936602|scaffold_500793.1                        143    4e-33
  Ahg935615 jgi|Araly1|935615|scaffold_403603.1                        128    1e-28


> Ahg936602 jgi|Araly1|936602|scaffold_500793.1
Length=1113

 Score =  143 bits (77),  Expect = 4e-33
 Identities = 169/211 (80%), Gaps = 16/211 (8%)
 Strand=Plus/Plus

Query  752  AGAAGAGCTTTCACAACATCCCAAGGATCTCTTATGTATATGAA-A-ATTATCAATGAAG  809
            |||||| ||| |||||| || ||||||| ||| ||||||||||| | ||| || || |  
Sbjct  662  AGAAGAACTTGCACAACTTCTCAAGGATATCTCATGTATATGAATATATTCTCTAT-ACC  720

Query  810  AAAAAGATGATGGAAGTTTAG-GGCTTAAGTTATGTGTATGGAGGTTA-AAGAG-TGGGA  866
            |||| | |||||||| ||||| || | |||||||||||||||||| || || || ||| |
Sbjct  721  AAAA-GTTGATGGAAATTTAGAGGAT-AAGTTATGTGTATGGAGGCTAGAA-AGCTGGCA  777

Query  867  AATGG-GAAATAGTATCTGAAATATC-TCCGGCTTGTATCAAGAGTGGTTTAGATTACT-  923
            | ||| ||  ||||||| ||||| || |  || || ||| ||||  ||||| ||||| | 
Sbjct  778  A-TGGCGAC-TAGTATCCGAAATCTCATT-GGATTCTATTAAGACCGGTTTCGATTA-TA  833

Query  924  TTCCGTTGGCAATAAACCCTTTTGATGCTAA  954
            ||||||||| |||||||||||||||||||||
Sbjct  834  TTCCGTTGGGAATAAACCCTTTTGATGCTAA  864


> Ahg935615 jgi|Araly1|935615|scaffold_403603.1
Length=774

 Score =  128 bits (69),  Expect = 1e-28
 Identities = 148/186 (80%), Gaps = 5/186 (3%)
 Strand=Plus/Plus

Query  86   GATCTCGTGGTAAA-TATATTAGCGAGATTACC-ACTAAAGAGCATCACAGCTTTCACCT  143
            |||||  ||| ||| |||| ||||||| ||||| | | |||||||| ||| ||| || ||
Sbjct  39   GATCTATTGG-AAATTATACTAGCGAGGTTACCGA-TTAAGAGCATAACAACTTGCAACT  96

Query  144  TGGTTTGCAAGGAATGGAAATCAATAGTCGAATCTCAATATCTACACGAACTTTTTATGT  203
            |||||||||||||||||||||||||||| |||||| | | ||| |  || |||||  | |
Sbjct  97   TGGTTTGCAAGGAATGGAAATCAATAGTGGAATCTGAGTTTCTCCGGGAGCTTTTCCTTT  156

Query  204  CTCATCATCAAGACTCGCATCCTTCATGGTCACTCATGTGCAGAGAAACTCATAAAGAAG  263
            |||| ||| || | |||||| |||| ||||| ||||| ||||  ||| || | |||||||
Sbjct  157  CTCACCATAAAAAATCGCATTCTTCGTGGTCGCTCATATGCACCGAATCTAAGAAAGAAG  216

Query  264  TCATTG  269
            || |||
Sbjct  217  TC-TTG  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52640718590


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5