BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28230.2
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484606 jgi|Araly1|484606|fgenesh2_kg.5__598__AT3G28230.1 691 0.0
Ahg935276 jgi|Araly1|935276|scaffold_403264.1 436 7e-122
Ahg891313 jgi|Araly1|891313|Al_scaffold_0007_3299 115 4e-25
> Ahg484606 jgi|Araly1|484606|fgenesh2_kg.5__598__AT3G28230.1
Length=576
Score = 691 bits (374), Expect = 0.0
Identities = 490/545 (90%), Gaps = 11/545 (2%)
Strand=Plus/Plus
Query 84 ATCGAGCTGATCAACGATGAAAATTGACAACGCTAGAGAAGAAAAGAAGAAAAAAGGACA 143
||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||| |
Sbjct 39 ATCGAGCTGATTTCCGATGACGATTGACAACGCGAGAGAAGAAAAGAAGATAAAAGGAGA 98
Query 144 GAAACGCAAGCACCAGCAGAATGATCAAGCTGATATGGAAATGTTAAAACTTCGAGCTGC 203
|||||||||||| | ||||||||||| | ||||||||| |||||||||||||||| ||
Sbjct 99 GAAACGCAAGCA-C--CAGAATGATCAGGTTGATATGGAGATGTTAAAACTTCGAGAAGC 155
Query 204 TCTAGAGGGAAAACATAGAAGCAATGGTTCTACTGTTTTAAAGTCTGCTAAAGCTCAAAA 263
|||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 156 TCTAGAGGGAAAACTTAGAAGCAATGATTCTACTGTTCCAAAGTCTGATAAAGCTCAAAA 215
Query 264 ACGCCAGAAATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGA 323
||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 216 ACGTCAGAAATCAGAAGACTCAGAAGATGAATTTTACAAACAAGTGAAACAAAAACAAGA 275
Query 324 AGCTAAAAAAGCTGCCAAAGCAGAAATCTATTCAAGGAAACCATATTTGATCCCGTCATC 383
|||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 276 AGCTAAAAGAGCTGCCAAAGCAGAGATCTATTCAAGGAAACCACATTTGATCCCGTCATC 335
Query 384 GCCAGATCTG-GTGGATGGAAGACGATTGATTTCAAATCAGATGGCTAGTAACAGAGGAT 442
|||||| | | || | ||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 336 GCCAGAAC-GTGTAGTTGGAAAACGTTTGATTTCAAATCAGATAGCTAGTAACAGAGGAT 394
Query 443 TGACCCGGAAACGCAACAAGGACCATAAAAACCCGAGAAAGAAGTACCGGGATCAGCACA 502
||||||| |||||||| |||||||||||||||||||||||||| || |||||| ||||||
Sbjct 395 TGACCCGTAAACGCAATAAGGACCATAAAAACCCGAGAAAGAACTATCGGGATAAGCACA 454
Query 503 AGAAAATAGTCATTAACCGCAAAGGACAGGTCAGAGAT-ATCAGG--ACGCAAGTGGGTC 559
|||||| ||||||||| | || |||||| |||||| | |||||| || ||| ||||||
Sbjct 455 AGAAAAAAGTCATTAATCACAGAGGACAAGTCAGA-TTAATCAGGAAAC-CAA-TGGGTC 511
Query 560 CATATGCAGGAGAAACTCGCGGTATCAATCCCTACACAAGCCGCAGCATCCGAATCAAGA 619
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 512 CATATGCAGGAGAAACTCGCGGTATCAATCCCAACACAAGCCGGAGCATTCGAATCAAGA 571
Query 620 ACTAA 624
|||||
Sbjct 572 ACTAA 576
> Ahg935276 jgi|Araly1|935276|scaffold_403264.1
Length=2033
Score = 436 bits (236), Expect = 7e-122
Identities = 318/357 (89%), Gaps = 8/357 (2%)
Strand=Plus/Plus
Query 272 AATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGAAGCTAAAA 331
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1657 AATCAGAAGGCTCAGAAGATGAATTTTACAAACAAGTGAAACAGAAACAAGAAGCTAAAC 1716
Query 332 AAGCTGCCAAAGCAGAAATCTATTCAAGGAAACCATATTTGATCCCGTCATCGCCAGATC 391
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1717 GAGCTGCTAAAGCAGAGATCTATTCAAGGAAACCACATTTGATCCCGTCATCGCCAGAAC 1776
Query 392 TG-GTGGATGGAAGACGAT-TGATTTCAAATCAGATGGCT-AGTAACAGAGGATTGACCC 448
| |||||||||| |||| | |||||||||||||| | |||||||||||||||||||
Sbjct 1777 -GCGTGGATGGAAAACGACAT-ATTTCAAATCAGATTA-TGAGTAACAGAGGATTGACCC 1833
Query 449 GGAAA-CGCAACAAGGACCATAAAAACCCGAGAAAGAAGTACCGGGATCAGCACAAGAAA 507
| | | ||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||
Sbjct 1834 G-ACATCGCAACAAGGACCTTAAAAACCCGAGAAAGAAGTATCGGAATAAGCACGAGAAA 1892
Query 508 ATAGTCATTAACCGCAAAGGACAGGTCAGAGATATCAGGACGCAAGTGGGTCCATATGCA 567
| ||||||| | |||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct 1893 AAAGTCATTGATCGCAAAGGACAGGTCAGAGATATCCGGAAACAAACAGGTCCATATTCA 1952
Query 568 GGAGAAACTCGCGGTATCAATCCCTACACAAGCCGCAGCATCCGAATCAAGAACTAA 624
|||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1953 GGAGAAACTCGCGGTATCAATCCCAACACAAGCAGGAGCATCCGAATCAAGAACTAA 2009
Score = 163 bits (88), Expect = 1e-39
Identities = 162/194 (84%), Gaps = 20/194 (10%)
Strand=Plus/Plus
Query 100 ATGAAAATTGA-CAACGCTAGAGAAGAAAAGAAGAAAAAAGGACAGAAACGCAAGCACCA 158
||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1152 ATGAAAATTGATGGA-GCAAGAGAAGAAAAGAAGAAAAAAGGAGAGAAACGCAAGCACCA 1210
Query 159 GCAGAATGATCAAGCTGAT----A---TG-G-AAATGTTAAAACTTCGAGCTGCTCTAGA 209
|||||||||||| | |||| | || | ||||||||||||||||||| ||||||||
Sbjct 1211 GCAGAATGATCAGGTTGATGTGCAAAGTGAGGAAATGTTAAAACTTCGAGCAGCTCTAGA 1270
Query 210 GGGAAAACATAGAAGCAATGG--T--T-----CTACTGTTTTAAAGTCTGCTAAAGCTCA 260
|||||| | |||||||||||| | | ||||||||| |||||||| |||||||||
Sbjct 1271 GGGAAAGCTTAGAAGCAATGGAGTCCTTGGTTCTACTGTTTCAAAGTCTGATAAAGCTCA 1330
Query 261 AAAACGCCAGAAAT 274
|||||||||||||
Sbjct 1331 GAAACGCCAGAAAT 1344
> Ahg891313 jgi|Araly1|891313|Al_scaffold_0007_3299
Length=255
Score = 115 bits (62), Expect = 4e-25
Identities = 80/89 (90%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 272 AATCAGAAGACTCAGAAGATGAATTTTACAGACAAGTGAAACAGAAACAAGAAGCTAAAA 331
||||| ||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 20 AATCAAAAGGCTCAAAAGATGAATATTACAAACAAGTGAAACAGAAACAAGAAGCTAAAC 79
Query 332 AAGCTGCCAAAGCAGAAATCTATTCAAGG 360
|| |||||||||||| ||||||||||||
Sbjct 80 GAGTTGCCAAAGCAGAGATCTATTCAAGG 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5