BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28270.2
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896745 jgi|Araly1|896745|Al_scaffold_0005_711 610 8e-174
> Ahg896745 jgi|Araly1|896745|Al_scaffold_0005_711
Length=837
Score = 610 bits (330), Expect = 8e-174
Identities = 541/642 (84%), Gaps = 18/642 (3%)
Strand=Plus/Plus
Query 571 GGAGATCCCTTTGACGGCAAAGTTCTCAC-AACTCAGTTCGAGCGGATCAAAAAGCAGCA 629
|||||||||||| | ||| |||| ||||| || |||||||||| ||||||||||||||
Sbjct 205 GGAGATCCCTTTAATGGCCAAGTGCTCACGAA-TCAGTTCGAGTTAATCAAAAAGCAGCA 263
Query 630 AGAATCCCTTCTGGAGGAAGTGAGTGAGACTA-GAAAAAAGATTCAGGACGAAATTAGTA 688
|||||||||||||||||||||| | |||||| | ||||||||| |||| ||||||| ||
Sbjct 264 GGAATCCCTTCTGGAGGAAGTGACTCAGACTATG-AAAAAGATTGAGGAGGAAATTACTA 322
Query 689 ATCTAG-AGaaa-aaaaCTTTAATTACGAACGTGGTTTTCGGCGCTGCGTTTGCTATTGT 746
|||| | ||||| ||| | ||||| |||| | ||||||||||||| ||||||| | ||
Sbjct 323 ATCT-GAAGAAAGGAAA-TGTAATTGCGAATATTGTTTTCGGCGCTGTGTTTGCTGTCGT 380
Query 747 TGCGGTTGCATCCATAGCTCTAATTGCAACAGGCGTGGGTGCGGCTGCCGG-CTTTGGGG 805
||| || ||||| ||||||||||||| || | | |||| || || ||| || |||||
Sbjct 381 TGCCGTCGCATCGATAGCTCTAATTGTAATATTCCCGGGTACGATTG-CGGCCTATGGGG 439
Query 806 CTCTAGCCGCACCACTGCTTGCGGCAGGATGGGCTGGAGTCTACACTACCTTGGATAAAA 865
||||||||||||||||| ||||| |||||| | | ||| |||||| ||||| |||||
Sbjct 440 CTCTAGCCGCACCACTGGTTGCGTTGGGATGGCCAGTCGTCAACACTATCTTGGGTAAAA 499
Query 866 AGAAGGATGCTCTGAACAAACAGTTAGAAGGTCTAAAGAAAGTGGAAGAGATA-GAAGAA 924
||| ||| |||||| |||||||| ||| |||| |||||||| |||||||| ||| ||
Sbjct 500 AGATTGATAATCTGAATAAACAGTTGGAAAGTCTGAAGAAAGTAAAAGAGATAGGAA-AA 558
Query 925 TCGGTGGAGAAAGGTATAAAAACCAACGAAGAAGCGACGGAGACCGTATCGATTTTAGTC 984
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 559 ACGGTGGAGAAGGGTATAAAAACCAACGAAGAAGCGTCAGAGACCGTATCGATTTTAGTC 618
Query 985 GACGGGCTAGAAGACCGTATCAAAAATATGTTGAAACTTGTAGATAATGCTATTGACCAT 1044
||||||||||| ||||||||| ||||||||||| | ||||||||||| |||||||| ||
Sbjct 619 GACGGGCTAGATGACCGTATCCAAAATATGTTGGAGCTTGTAGATAAGGCTATTGAGAAT 678
Query 1045 GAAGATA-ATGAGGCGGCCACGAGAATTGTCCT--AACTCAGATCAGTAAGAAAGTAGAG 1101
||||| | |||||| |||||||| | ||||| | || | || || | ||||||| |||
Sbjct 679 GAAGA-AGATGAGGGGGCCACGATACTTGTCATGAAAAT-AG-TCCCTGAGAAAGTTGAG 735
Query 1102 AAATTAACAAAGAAAATCACGGAGGTTGGTGAAAGTGTGGAAGATCATAGCAAGTTGATT 1161
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 736 AAATTAACAAAGAAAATCAAGGAGGTTGGTGAAAGTGTGGAAGATCATAGCAAATTGGTT 795
Query 1162 GCAAAGGCCAGACTTCAAGTTCTGCAAAAGATCAACCGTTAA 1203
||| |||| ||| |||| ||||||||||||||||||||||||
Sbjct 796 GCAGAGGCGAGATTTCACGTTCTGCAAAAGATCAACCGTTAA 837
Score = 209 bits (113), Expect = 4e-53
Identities = 165/189 (87%), Gaps = 7/189 (4%)
Strand=Plus/Plus
Query 79 ATGGCGTTATCCAAAGATTTGATGTTGAAATGCTCGGAAGACATGATGAGTGCTTACAAA 138
|||||||||||| |||||||||||| ||||||||| | | ||| ||||||||||| |||
Sbjct 1 ATGGCGTTATCCGAAGATTTGATGTCGAAATGCTCAG-A-ACA-AATGAGTGCTTATAAA 57
Query 139 TCTGCTTGTGAAGAACACCCAAAACTAAAATCCTTTGATGCTTCCCTTCAGCAGCGAACC 198
|||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||
Sbjct 58 GCTGCTTGTGAAGAAGACCCAAAACTCAAATCCTTTGATGCTTCGCTTCAGCAGCAAACC 117
Query 199 AACAAAATGATAGACTCACTCACCGTTGAAGACA-AGAATGGTTCG-TCCTCCCCACACG 256
||||||||||||||||||||||||||||| || ||| ||| ||| | ||||||||||
Sbjct 118 AACAAAATGATAGACTCACTCACCGTTGAC-ACCGAGACTGGGTCGGTG-TCCCCACACG 175
Query 257 ACGCACACA 265
| | |||||
Sbjct 176 ATGTACACA 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5