BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28280.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936601 jgi|Araly1|936601|scaffold_500792.1 745 0.0
Ahg936600 jgi|Araly1|936600|scaffold_500791.1 712 0.0
> Ahg936601 jgi|Araly1|936601|scaffold_500792.1
Length=1070
Score = 745 bits (403), Expect = 0.0
Identities = 621/722 (86%), Gaps = 31/722 (4%)
Strand=Plus/Plus
Query 10 TCTCCATATTTCCGTGACCTGTTTCTATCTATTCATCAAAACTCGCATTA-TTCATCATG 68
|||||||||||||||||| |||||| ||||| || |||||||| || || ||||||||
Sbjct 40 TCTCCATATTTCCGTGACTTGTTTCGGTCTATGCACCAAAACTCACA-TACGTCATCATG 98
Query 69 GTCGATCCTGTCT-CG-CTG-T-GATGAAGAAGTCATAGCTCACTATGGATGCAACACTT 124
|||| || ||||| | | | || ||||||||| |||||||||| |||||||||||||
Sbjct 99 GTCGCTCATGTCTGGGAAAGATGGA-GAAGAAGTCGTAGCTCACTACGGATGCAACACTT 157
Query 125 GGGGACTCCAACGATCTCTCCACTTC-TACATCTCGTCTTTCCTTACCAAGAAGTTTGAA 183
|||||||| ||| |||||| | || ||||||||||||||||| ||||||| ||||||
Sbjct 158 GGGGACTCGAACAATCTCTAGGC-TCTTACATCTCGTCTTTCCTAACCAAGATGTTTGAG 216
Query 184 ACACAAAGAAACAACTACAAAGTATGGTCTTACAGTACTGATGTTGGAATGATTTTGATC 243
|| ||| |||||| |||| |||||| |||||| || || || ||| |||||||||||
Sbjct 217 ACTGAAAAAAACAAATACATTGTATGGGCTTACA--AC-GACGTCGGATTGATTTTGATC 273
Query 244 AGTGAAAACTGTATCTGCGTGAAGAACCGATCCTTGTACGTAGCTAATCCAGTTTCACAG 303
|||||| | |||||| |||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 274 AGTGAACTCCCTATCTGGGTGACGAACCGATCATTGTACGTGGCTAATCCAGTTTCACAG 333
Query 304 GAATGCGTAGAGATCCCTTCTCATGGTTATCTCAAGAAAGTCTCATGTCCCTTGGGAATT 363
||||||||||||||||| ||||||| | |||||||| ||||||| |||||||||||||||
Sbjct 334 GAATGCGTAGAGATCCCGTCTCATGCTCATCTCAAGGAAGTCTCCTGTCCCTTGGGAATT 393
Query 364 GCCACACGAACTGAGAATGGCGTTCTTTTGGATTACAAAGTTGTTTTGTTTAATGGAAGC 423
||||||||||||||||||||| ||||||||||||||| ||||||| ||||| | | | |
Sbjct 394 GCCACACGAACTGAGAATGGCATTCTTTTGGATTACAGAGTTGTTCTGTTTGACG-A-G- 450
Query 424 GATACGTTTAGAAGGTTGCTGATATATTCATCCCAGACTGGCATGTGGAGTATCAACACT 483
|| | || ||| ||||||||||||||||| || || ||| |||||||| ||||||||
Sbjct 451 GA--C-TTGAGA---TTGCTGATATATTCATCACATACAGGCTTGTGGAGTCTCAACACT 504
Query 484 GTCGATT-TGA-C-TGTGTCAGGTTT-TCATA-ACCAGTCTCCCATTAGCTTGCACGGGA 538
|| |||| | | | | | | || ||| | ||| || | ||||||||||||||||||||||
Sbjct 505 GTGGATTCTTATCCT-T-T-AGCTTTGT-ATACACAA-TCTCCCATTAGCTTGCACGGGA 559
Query 539 GTATTCACTGGATCGCCAGCACTAGTCACAGTGAAGATGTTGCTGTATCCTTCGATTTAT 598
||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 560 GTATTCATTGGATCGCCAGCACTAGTCACAGTGTAGATGTTGTTGTATCCATCGATTTAT 619
Query 599 ACGCCACTGGTACGAGCTCTGTTCAATGCCGTGTGACTACTTTCCCTGATTTCGGAAAAC 658
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 620 ACGCCACTGGTACGAGCTCTGTTCAATGCCGTGTGACTTCTTTCCCTGATTTCGGACAAC 679
Query 659 ATCCCAAATTCACTAGATCGTTCTCCACTTGTCAAGGATCTCTCATGTATATGAATATAA 718
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 680 ATCCCAAATTCAATAGATCTTTCTCAACTTGTCAAGGATCTCTCATGTATATGAACATAA 739
Query 719 TC 720
||
Sbjct 740 TC 741
> Ahg936600 jgi|Araly1|936600|scaffold_500791.1
Length=1182
Score = 712 bits (385), Expect = 0.0
Identities = 648/769 (84%), Gaps = 41/769 (5%)
Strand=Plus/Plus
Query 4 GTGGATTCTCCATATTTCCGTGACCTGTTTCTATCTATTCATCAAAAC-TCGCATTATTC 62
||||| |||||||||||||||||| ||||||| ||||| || | |||| ||||||| |||
Sbjct 125 GTGGAGTCTCCATATTTCCGTGACTTGTTTCTGTCTATGCA-CCAAACGTCGCATTCTTC 183
Query 63 ATCATGGTCGATCCTGTCTCGCTG---TGATGAAGAAGTCATAGCTCACTATGGATGCAA 119
||||||||| || ||||| |||| |||| |||||||||||||| |||| | ||||||
Sbjct 184 ATCATGGTCTCTCTTGTCTTGCTGTTTTGATAAAGAAGTCATAGCTAACTACGAATGCAA 243
Query 120 CACTTGGGGACTCCAACGATCTCTCCACTTC-TACATCTCGTCTTTCCTTACCAAGAAGT 178
||||||||||||| ||||||||||| | || |||||||| |||||| | ||||||||||
Sbjct 244 CACTTGGGGACTCGAACGATCTCTCGGC-TCTTACATCTCTTCTTTCGTAACCAAGAAGT 302
Query 179 TTGAAACACAAAGAAACAACTACAAAGTATGGTCTTACAGTACTGATGTTGGAATGATTT 238
|||| || |||||||| |||||||||||| || ||||||||||||||||| | ||||
Sbjct 303 TTGAGACTTTGAGAAACAAATACAAAGTATGGGCTCACAGTACTGATGTTGGATTAATTT 362
Query 239 TGATCAGTGAA-AACTGTATCTGCGTGAAGAACCGATCCTTGTACGTAGCTAATCCAGTT 297
||||||||||| | | | || | |||||||||||||||||||||| ||||||||||||
Sbjct 363 TGATCAGTGAATTA-TTTTTCAACATGAAGAACCGATCCTTGTACGTGGCTAATCCAGTT 421
Query 298 TCACAGGAATGCGTAGAGATCCC-T-TC-TCATGGTTATC-TCA-AGAA-AGTCTCATGT 351
||||| ||||||||||| ||||| | || ||||| | ||| | | ||| | | || | |
Sbjct 422 TCACAAGAATGCGTAGAAATCCCTTCTCATCATGCTCATCGT-AGTGAATA-TTTC-TAT 478
Query 352 CCCTTGGGAATTGCCACACGAACTGAGAATGGCGTTCTTTTGGATTACAAAGTTGTTTTG 411
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 479 CCCTTGGGAATTGCCACACGAAGTGAGAATGGCTTTCTTTTGGATTACAAAGTTGTTTTG 538
Query 412 TTTAATGGAAGCGATACGTTTAGAAGGTTGCTGATATATTCATCCCAGACTGGCATGTGG 471
||| || | || | | | ||| ||||||||||||||||| |||| ||| |||||
Sbjct 539 TTTGAT--ACGC-ACA-----A-AAGCTTGCTGATATATTCATCTAAGACAGGCTTGTGG 589
Query 472 AGTATCAACACTGTCGATTTGACTGTGTCAG-GTTTTCATA-ACCAGTCTCCCATTAGCT 529
||| ||||||||||||||||| ||||||| | || || || || | ||| ||||| |||
Sbjct 590 AGTCTCAACACTGTCGATTTGTCTGTGTC-GTGTATTGATTTACGA-TCTACCATTTGCT 647
Query 530 TGCACGGGAGTATTCACTGGATCGCCAGCACTAGTCACAGTGAAGATGTTG-CTGTATCC 588
||||||| |||||||||| |||||||| |||||||||| |||||||||||| | ||||||
Sbjct 648 TGCACGGCAGTATTCACTTGATCGCCACCACTAGTCACGGTGAAGATGTTGTC-GTATCC 706
Query 589 TTCGATTTATACGCCACTGGTACGAGCTCTGTTCAATGCCGTGTGACTACTTTCCCTGAT 648
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 707 TTCAATTTATACGCCACTGGTACGAGTTCTGTTCAATGCCGTGTGACTTCTTTCCCAGAT 766
Query 649 TTCGGAAAACATC--CCAAATTCACTAGATCGTTCTCCACTTGTCAAGGATCTCTCATGT 706
|||||| |||||| || ||| | |||| ||||| ||||| ||||||||| ||||||
Sbjct 767 TTCGGACAACATCGGCCGAAT--A---GATCTTTCTCAACTTGGCAAGGATCTATCATGT 821
Query 707 ATATGAATATAATCTCTATAACCAAAGTTGATGGAAGTCTAGAG-ATAA 754
||||||| ||||||||| |||| |||| |||||||||||||||| ||||
Sbjct 822 ATATGAACATAATCTCTGTAACTAAAGATGATGGAAGTCTAGAGGATAA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5