BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28320.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896754 jgi|Araly1|896754|Al_scaffold_0005_720 455 4e-127
> Ahg896754 jgi|Araly1|896754|Al_scaffold_0005_720
Length=846
Score = 455 bits (246), Expect = 4e-127
Identities = 455/553 (82%), Gaps = 25/553 (5%)
Strand=Plus/Plus
Query 546 AAAGAATTAGTAATGTAAACACAGCGACTATAGTTTCGCACGTGGTTTTTGGCGCTGCGG 605
|||||||||||| |||||| |||| ||||||| ||||||||||||| || ||||||| ||
Sbjct 305 AAAGAATTAGTACTGTAAAGACAGTGACTATAATTTCGCACGTGGTGTTCGGCGCTGTGG 364
Query 606 CTTTCGGTTACGCCGCCGGATGTATAGCTCTAATGTGTACAGGCGTGGGTGCCCCTCTGG 665
| || |||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 365 GTGTCATTTACTTTGCCGGATGTATAGGTCTAATGTGTACAGGCGTGGGTGCTCCTCTGG 424
Query 666 GCGC--T---GG-AATGGTTACATTATTACCAGTGATTGTGGT-GCAATGGGTGGGTGTC 718
| || | || ||||| | || | | ||| || | | | ||||||||| |||
Sbjct 425 GGGCTGTAGGGGCGATGGTGGGA--ATAATC-GTGCTTCCGCTAG-GATGGGTGGGCGTC 480
Query 719 AATTATGTCTTGAAT-AACA-GTTTAGAAGCTCTTCAGAAACAGCTTAAAGCTCTGAACA 776
|||||| |||||||| || | | || |||||||||||||||||||| |||||||||||||
Sbjct 481 AATTATTTCTTGAATGAA-AGGCTT-GAAGCTCTTCAGAAACAGCTAAAAGCTCTGAACA 538
Query 777 -AGGTGAAACCTATACCA-GAAAGGATAACTGAGGGTATGGA-AGCCGACAAAGAAGGTA 833
| |||||| |||||||| ||| |||| |||||||| | | ||||| ||| ||| |
Sbjct 539 TA-GTGAAATCTATACCACCAAA-GATAGGTGAGGGTA-CAATAACCGACCAAGTAGGGA 595
Query 834 TGAAGTCCGTACCTGAACAAGTCGACGAGCTAAAAGATCAGATCTCGTCTCTGTTGCAAA 893
| || |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 596 TAAATTCCGTATCTGAACAAGTCGACGAGCTAAAAGATCAGATCAAGTCTATGTTGGAAG 655
Query 894 CTGTGGATGATGCTATTGGGAGTGAAGGAGATGAGGTGGACGTGAAACTAGACATGGAAA 953
|||||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| |||
Sbjct 656 CTGTGGATGATGCTATTGAGAGTAAAGGAGATGAGGTGGACATGAAAGTAGATATGCAAA 715
Query 954 GCCTCGAGGATGATGTGAAGACATTAACAACGAAAATCACGGAGGTTTGTGAA-ACTGTG 1012
|||||| ||| || ||| ||| ||||||||||||||||| |||| || |||| | ||||
Sbjct 716 GCCTCGTGGAGGAAGTGGAGAAATTAACAACGAAAATCAAGGAGATTGGTGATGA-TGTG 774
Query 1013 GCTAAATATAGCAAAATT-ATCAAAGAGGCGAGACTTCACGTTTTGGAGAAGATCACTGG 1071
| | |||||||||| || ||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 775 GATGTATATAGCAAA-TTGATCAAAGAGACGAGACTTCACGTTTTGGAAAAGATCAATGG 833
Query 1072 TACTGGATAATAA 1084
| ||||| |||||
Sbjct 834 TTCTGGAAAATAA 846
Score = 113 bits (61), Expect = 3e-24
Identities = 77/85 (91%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 405 AGTTTAAAGCCATGGGAAATCCTTTTGATGACGGCCTGCTCAAGACTCAGTTCGAGTTGA 464
|||||||||||||||||||||||||||||| | || ||||| || ||||||||||||||
Sbjct 206 AGTTTAAAGCCATGGGAAATCCTTTTGATGGCAGCGAGCTCACGAATCAGTTCGAGTTGA 265
Query 465 TGAACAAACAGCAGGAATCTCTTTT 489
||||||| ||||||||||| |||||
Sbjct 266 TGAACAAGCAGCAGGAATCCCTTTT 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5