BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28330.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936602 jgi|Araly1|936602|scaffold_500793.1 1467 0.0
Ahg952067 jgi|Araly1|952067|scaffold_3400011.1 215 6e-55
Ahg949358 jgi|Araly1|949358|scaffold_801245.1 211 8e-54
Ahg949359 jgi|Araly1|949359|scaffold_801246.1 209 3e-53
Ahg951744 jgi|Araly1|951744|scaffold_13300003.1 62.1 8e-09
Ahg319134 jgi|Araly1|319134|fgenesh1_pm.C_scaffold_3002150 62.1 8e-09
> Ahg936602 jgi|Araly1|936602|scaffold_500793.1
Length=1113
Score = 1467 bits (794), Expect = 0.0
Identities = 966/1047 (92%), Gaps = 19/1047 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGATTATACTTGCGAGATTACCACTAAAGAGCATCATCACCACTCCAAAACTGGT 60
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 23 ATGGGAGCTTATACTTGCGAGATTACCACTAAAAAGCATCATCACCACTCCAAAATTGGT 82
Query 61 TTGCAAGGTTGTGAGACAGAGATCATGTCTCACTATGGATCTGACAATTGGAATCTTAAC 120
|| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 83 TT---AGGTTGTGAGACAGAGATCATGTCTCACTATGGATCAGACAACTGGAATCTTAAA 139
Query 121 CATTCTCTCGGTTATTACATCTCTTCCTTCCTTACCGACAAATTCGAGAACTATAATGAA 180
||||||||||||| |||||| ||||| ||||| ||| |||||||||||||||||||||||
Sbjct 140 CATTCTCTCGGTTCTTACATTTCTTCTTTCCTAACCAACAAATTCGAGAACTATAATGAA 199
Query 181 GCTAGAGTCGTGTCTTACACGGATGTTGGATTGATATTGGTTCATCGAGTGTC-AAGTCA 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 200 GCTAGAGTCGTGTCTTACACGGATGTTGGATTGATATTGATTCATCGAGTGTCGAA-TCA 258
Query 240 GTCTTTCTACGTAGCTAATCCTGTTTCTAGGCAATGCGTAGAGATTCTT-C-----CTTC 293
||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 259 ATCTTTCTACGTTGCTAATCCTGTTTCTAGGCAATGCGTTGAGATTCTTCCTTTAGCTTC 318
Query 294 ACAGAAACTGGATTGTTTCTGGATTTTGGGAATAGCTACAAGAGTTGAGAATGGCGTCGT 353
|||||||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 319 ACAGAAACAGGAACGTTTATGGATTTTGGGAATAGCCACAAGAGTTGAGAACGGCGTCGT 378
Query 354 TTTAGGTTACAAAGTTGTTCTGTTGAAACCTAACTTCACTTTCCTCATATATTCATCTGA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTTAGGTTACAAAGTTGTTCTGTTGAAACCTAACTTCACTTTCCTCATATATTCATCTGA 438
Query 414 GACAGG---CT--T-GTGGAGTCTCAACAGTGACACTTTTCCTTTCAGCT-ATATATCTC 466
|||||| || | ||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 439 GACAGGATTCTGCTTGTGGAGTCTCAACAGTGCCAATTTTCCTTTCA-CTTATATATCTC 497
Query 467 AAGAGTTTAACAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCCCACGGTTCCG 526
| |||||||||||||| ||||||||||||||||||||| ||||||| || |||||||||
Sbjct 498 AGGAGTTTAACAATCCTATTAGCTTGAACGGAAGTCTTCACTGGCTAGCTCACGGTTCCA 557
Query 527 AGTATCAAGATTTCATTGTATCCATCGATTTCTATGTTGTTGATAGCCGCTCTGATCGAT 586
| |||||||||||| ||||||||||| | ||||| | | |||||||||| ||||||||||
Sbjct 558 ACTATCAAGATTTCGTTGTATCCATCAACTTCTACGCTATTGATAGCCGGTCTGATCGAT 617
Query 587 GCCGCGCTACGCCATTTCCTGATTTAGATAAAGTTCCGAAATTCAGAAGAACTTGCACAA 646
| || ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 618 GTCGTGCTACGCAATTTCCTGATTTAGATAAAGTTCCTAAATTCAGAAGAACTTGCACAA 677
Query 647 CTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATACCAAAAGTTGATGGTAATT 706
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 678 CTTCTCAAGGATATCTCATGTATATGAATATATTCTCTATACCAAAAGTTGATGGAAATT 737
Query 707 TAGAGGACAAGTTATGTGTATGGAGGCTAGAGAGCTGGCAATGGCGACTAGTATTCGAAA 766
||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 738 TAGAGGATAAGTTATGTGTATGGAGGCTAGAAAGCTGGCAATGGCGACTAGTATCCGAAA 797
Query 767 TATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCCGTTGGGAACAGACCCTTTTG 826
| || ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 798 TCTCATTGGATTCTATTAAGACCGGTTTCGATTATATTCCGTTGGGAATAAACCCTTTTG 857
Query 827 ATGCTAAAACAGTCTACCTTTGGAGTCGCAAATGCTTGTTATCTATTAACTTACACAATG 886
||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 858 ATGCTAAAACAGTCTACCTTTGGAGTCACAAATGTTTGTTATCTATCAACTTACACAATG 917
Query 887 GAGACATTGTGCTCCACAAGGATGTGGAACATAGCAGCGCGGGTCGCATTCTGAATTCCG 946
||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 918 GAGACTTTGTGCTCCACAAGGATATGGAACGTAGCAGCGAGGGTCGCATTCTGAATTCCG 977
Query 947 TTGATTGCCCGAGAGATATGACATACATCTTAGAATCAAACTTTGCCTCGTTCGTTCTCC 1006
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 978 TTGATTGCCCGAGAGATATGAAATACATCTTAGAATCAAATTTTGCCTCGTTCGTTCTCC 1037
Query 1007 CACAGTGGATGCATCCGTTCCCTAGCA 1033
|||||||||||||||||||||| ||||
Sbjct 1038 CACAGTGGATGCATCCGTTCCCGAGCA 1064
> Ahg952067 jgi|Araly1|952067|scaffold_3400011.1
Length=1208
Score = 215 bits (116), Expect = 6e-55
Identities = 346/455 (76%), Gaps = 24/455 (5%)
Strand=Plus/Plus
Query 400 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA 458
|||||||||||||||||||||||||||||||||| || || | | ||| |||| || ||
Sbjct 562 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT 619
Query 459 TATA-TCTCAAGAGTTTAA-CAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCC 516
| || | |||| | ||| | | || ||||||||||| |||| ||||||||||||| |
Sbjct 620 TGTACTATCAATATTTTTATCGTTCA-ATTAGCTTGAATGGAAATCTTTACTGGCTCAAC 678
Query 517 CACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCC 574
| | | || || ||||| || || |||||| || |||||||||| || | |
Sbjct 679 CGCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CG 735
Query 575 GCT-CTGATCGATGCCGCGCTACGCCATTTCC-TGATTTAG-ATAAAGTTCCGAAATTCA 631
| | ||||||||| || | ||| | ||||| ||||| || | ||| ||| |||||||
Sbjct 736 GATTCTGATCGATTTCGTGTTACACG-TTTCCCTGATTCAGGA-AAACATCCCAAATTCA 793
Query 632 GAAGAACTTGCACAACTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CCA 690
|||| | ||||| | || |||||||| ||||||||||||||| || | |||||| |||
Sbjct 794 AAAGAGCATGCACTATTTTTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACCA 853
Query 691 AAAGTTGATGGTAATT-TAGAGGACAAGTTATGTGTATGGAGGCTAGAGAGCTGGCAATG 749
|| | |||||| || | ||||||| ||| || || |||||| ||| ||||| || ||||
Sbjct 854 AA-GATGATGG-AAGTCTAGAGGATAAGCTAAGTATATGGAAGCTTCAGAGCGGGGAATG 911
Query 750 GCGACTAGTAT-TCGAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCC-G 807
|| |||||||| | ||||| ||| |||||| | |||| | |||| ||| ||||||| |
Sbjct 912 GCAACTAGTATCT-GAAATCTCTGTGGATTGTGTTAATCCCAGTTTTGATCATATTCCAG 970
Query 808 TTGGGAACAGACCCTTTTGATGCTAAAACAGTCTA 842
| | || | || || |||||||||||||||||||
Sbjct 971 T-GACAATAAACTCTGTTGATGCTAAAACAGTCTA 1004
> Ahg949358 jgi|Araly1|949358|scaffold_801245.1
Length=1189
Score = 211 bits (114), Expect = 8e-54
Identities = 432/579 (75%), Gaps = 48/579 (8%)
Strand=Plus/Plus
Query 400 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA 458
|||||||||||||||||||||||||||||||||| || || | | ||| |||| || ||
Sbjct 561 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT 618
Query 459 TATA-TCTCAAGAGTTTAACAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCCC 517
| || | | | | ||| | | | ||||||||||| |||| ||||||||||||| ||
Sbjct 619 TGTACTATGGATATTTTTCCCGTTCAATTAGCTTGAATGGAAATCTTTACTGGCTCAACC 678
Query 518 ACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCCG 575
| | || || ||||| || || |||||| || |||||||||| || | | |
Sbjct 679 GCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CGG 735
Query 576 CT-CTGATCGATGCCGCGCTACGCCATTTCC-TGATTTAG-ATAAAGTTCCGAAATTCAG 632
| ||||||||| || | ||| | ||||| ||||| || | ||| ||| |||||||
Sbjct 736 ATTCTGATCGATTTCGTGTTACACG-TTTCCCTGATTCAGGA-AAACATCCCAAATTCAA 793
Query 633 AAGAACTTGCACAACTTCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CCAA 691
|||| | ||||| | || |||||||| ||||||||||||||| || | |||||| ||||
Sbjct 794 AAGAGCATGCACTATTTTTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACCAA 853
Query 692 AAGTTGATGGTAATT-TAGAGGACAAGTTA-TGTGTATGGAGGCTAGAGAGCTGGCAATG 749
| | |||||| || | ||||||| |||||| | | |||||| |||| ||||| || ||||
Sbjct 854 A-GATGATGG-AAGTCTAGAGGATAAGTTAAT-TATATGGAAGCTAAAGAGCGGGGAATG 910
Query 750 GC-GACTAGTAT-TCGAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTCC- 806
|| | ||||||| | ||||| ||| ||||| | |||| | ||||||||| |||||||
Sbjct 911 GCAG-CTAGTATCT-GAAATCTCTGCGGATTTTGTTAATCCCGGTTTCGATCATATTCCA 968
Query 807 GTTGGGAACAGACCCTTTTGATGCTAAAACAGTCTACCTT-TGGA---GTC-GCA--AAT 859
|| | || | || || ||||||| ||||||||||| || |||| | ||| ||
Sbjct 969 GT-GACAATAAACTCTGTTGATGCAAAAACAGTCTAT-TTCTGGAACAGGAAGCATCAAA 1026
Query 860 GCTTGTTATCTATTAACTTACACAATGGAGACA-TT-GTGCTCCACAAG-GA-TGTGGAA 915
| ||| ||||| ||||||| |||||| || | || |||||||| | | || | |||||
Sbjct 1027 GTTTGGTATCTGCTAACTTATGCAATGG-GA-AGTTTGTGCTCCATA-GTGAAT-TGGAA 1082
Query 916 CATAGCAGCGCGGGTCGCATTCTGAATTCCGTTGATTGC 954
|||||| | | ||||| || |||||||||||| |||
Sbjct 1083 CATAGC-G-G----TCGCAGTCCGAATTCCGTTGAATGC 1115
> Ahg949359 jgi|Araly1|949359|scaffold_801246.1
Length=1208
Score = 209 bits (113), Expect = 3e-53
Identities = 348/458 (76%), Gaps = 30/458 (7%)
Strand=Plus/Plus
Query 400 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAACAGTGACACTTTT-CCTTTCAGCTA 458
|||||||||||||||||||||||||||||||||| || || | | ||| |||| || ||
Sbjct 562 ATATATTCATCTGAGACAGGCTTGTGGAGTCTCAGCATTGTC-CATTTGCCTT-CATCTT 619
Query 459 TATA-TCTCAAGAGTTTAA-CAATCCCATTAGCTTGAACGGAAGTCTTTACTGGCTCGCC 516
| || | |||| | ||| | | || ||||||||||| |||| ||||||||||||| |
Sbjct 620 TGTACTATCAATATTTTTATCGTTCA-ATTAGCTTGAATGGAAATCTTTACTGGCTCAAC 678
Query 517 CACGGTTCCGAGTATCAAGAT-TTCATTGTATCC-ATCGATTTCTATGTTGTTGATAGCC 574
| | | || || ||||| || || |||||| || |||||||||| || | |
Sbjct 679 CGCAATAGTGACAATGAAGATGTT-ATCGTATCCCAT-GATTTCTATGCAACTGGCA-CG 735
Query 575 GCT-CTGATCGATGCCGCGCTACGCCATT-TCCTGATTTAG-ATAAAGTTCCGAAATTCA 631
| | | |||||||| || | ||| | || |||||||| || | ||| ||| |||||||
Sbjct 736 GATTCGGATCGATGTCGAGTTACACT-TTATCCTGATTCAGGA-AAACATCCCAAATTCA 793
Query 632 GAAGAACTTGCACAACT-TCTCAAGGATGTCTCATGTATATGAACATATTCTCTATA-CC 689
||||| ||||| | | |||||||||| ||||||||||||||| || | |||||| ||
Sbjct 794 GAAGAGGATGCACTA-TATCTCAAGGATTTCTCATGTATATGAATGTAGTGTCTATAACC 852
Query 690 AAAAGTTGATGGTAATT-TAGAGGACAAGTTATGTGTATGGAGGCT-AGAGAGCTGGCAA 747
||| | |||||| || | ||||||| ||| || || |||||| ||| | ||||| || ||
Sbjct 853 AAA-GATGATGG-AAGTCTAGAGGATAAGCTAAGTATATGGAAGCTTA-AGAGCGGGGAA 909
Query 748 TGGC-GACTAGTAT-TCGAAATATCTTTGGATTCTATTAAGACTGGTTTCGATTATATTC 805
|||| | ||||||| | ||||| ||| |||||| | |||| | |||| ||| ||||||
Sbjct 910 TGGCAG-CTAGTATCT-GAAATCTCTGTGGATTGTGTTAATCCCAGTTTTGATCATATTC 967
Query 806 C-GTTGGGAACAGACCCTTTTGATGCTAAAACAGTCTA 842
| || | || | || || |||||||||||||||||||
Sbjct 968 CAGT-GACAATAAACTCTGTTGATGCTAAAACAGTCTA 1004
> Ahg951744 jgi|Araly1|951744|scaffold_13300003.1
Length=1127
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 401 TATATTCATCTGAGACAGGCTTGTGGAGTCTCAACA 436
||||||||||||||||||||||||||||| ||||||
Sbjct 539 TATATTCATCTGAGACAGGCTTGTGGAGTTTCAACA 574
> Ahg319134 jgi|Araly1|319134|fgenesh1_pm.C_scaffold_3002150
Length=1074
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 401 TATATTCATCTGAGACAGGCTTGTGGAGTCTCAACA 436
||||||||||||||||||||||||||||| ||||||
Sbjct 455 TATATTCATCTGAGACAGGCTTGTGGAGTTTCAACA 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5