BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28340.1
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936606 jgi|Araly1|936606|scaffold_500797.1 1796 0.0
> Ahg936606 jgi|Araly1|936606|scaffold_500797.1
Length=1138
Score = 1796 bits (972), Expect = 0.0
Identities = 1087/1143 (95%), Gaps = 6/1143 (1%)
Strand=Plus/Plus
Query 38 TCTTAGCCATTAAGTTCTCTTGATGATGTCTGGTTCAAGATTAGCCTCTAGACTAATAAT 97
||||||||||||||||||| | ||||||||| |||||||||||| |||||||| ||||
Sbjct 1 TCTTAGCCATTAAGTTCTC-TAATGATGTCTAGTTCAAGATTAGTCTCTAGAC---TAAT 56
Query 98 AATCTTCTCAATAATCTCCACATCTTTCTTCACCGTTGAATCGATTCGACTATTCCCTGA 157
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||
Sbjct 57 AATCTTCTCAATAATCTCCACAGCTTTCTTCAGCGTTGAATCGATTCGATTATTCCCAGA 116
Query 158 TTCATTCGACGATGCATCTTCAGATTTAATGGAAGCTCCAGCATATCAAAACGGTCTTGA 217
||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct 117 TTCATTCGACGATGCATCTTCAGATTTCACGGAGGCTCCAGCATATCAAAACGGTCTTGA 176
Query 218 TTGCTCTGTTTTAGCCAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATAT 277
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATGCTCTGTTTTAGCGAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATAT 236
Query 278 AGCTATGACTCTAGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTACATTCCATCCT 337
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 237 AGCTATGACTCTTGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTCCATTCGATTCT 296
Query 338 CAAACACACTTCTTGCCCTGAAAACATCTTCTTCCACTTCATTGCTTCGGGTACAAGTCA 397
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 297 CAAACACACTTCTTGCCCTCAAAACATCTTCTTCCACTTCATTGCTTCGGGTTCAAGTCA 356
Query 398 GGGTTCCCTCGCCAAGACCCTATCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATAC 457
||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGGTTCGCTCGTTAAGACTCTCTCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATAC 416
Query 458 CTTTGAAGAAACCACGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAG 517
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTTTGATGAAACCATGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAG 476
Query 518 TCCTTTGAATTACGCAAGAAGCTACTTATCCGAGATTCTTTCTTCGTGTGTTAGTCGAGT 577
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 477 TCCTTTGAATTATGCAAGAAGCTACTTGTCGGAGATTCTTTCTTCGTGTGTTAGTCGAGT 536
Query 578 GATTTATCTCGATTCGGATGTGATTGTGGTCGATGATATTCAGAAACTATGGAAGATTTC 637
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 GATTTATCTCGATTCGGATGTGATTGTAGTCGATGATATTCAGAAACTATGGAAGATTTC 596
Query 638 TTTATCCGGGTCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATA 697
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTTATCTGGATCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATA 656
Query 698 CTTCACAGATAGTTTCTGGTCCGATCAAAAACTCTCGAGTGTCTTCGATTCCAAGACTCC 757
||||||||| |||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 657 CTTCACAGAGAGTTTCTGGTCCGATCGAAAACTCTCGAGTGTCTTCGATTCGAAAACTCC 716
Query 758 TTGTTATTTCAACACAGGAGTGATGGTTATCGATTTAGAGCGATGGAGAGAAGGAGATTA 817
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 TTGTTATTTCAACACCGGAGTGATGGTTATCGATTTAGATAGATGGAGAGAAGGAGATTA 776
Query 818 CACGAGAAAGATCGAAAACTGGATGAAGATTCAGAAA-GAAGATAAGAGAATCTACGAAT 876
||| ||||||||||||| |||||||||||||| ||| |||||||| |||||||| ||||
Sbjct 777 TACGCGAAAGATCGAAAATTGGATGAAGATTCA-AAAGGAAGATAAAAGAATCTATGAAT 835
Query 877 TGGGTTCTTTACCACCGTTTCTTCTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATC 936
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 836 TGGGTTCTTTGCCACCGTTTCTTTTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATC 895
Query 937 AATGGAACCAACACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATC 996
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AATGGAACCAGCACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATC 955
Query 997 CTGGTCCGGTTAGTTTGATACATTGGAGTGGTAAAGGGAAGCCATGGGTTAGGCTTGATG 1056
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 956 CTGGTCCGGTTAGTTTGATACATTGGAGTGGAAAAGGGAAGCCATGGGTTAGGCTTGATG 1015
Query 1057 ATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGA 1075
Query 1117 GGCAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGATTTATTCATTTTTTGGGGT 1176
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 GACAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGATTTATTCATTTTTTTGGGT 1135
Query 1177 TTT 1179
|||
Sbjct 1136 TTT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60182587100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5