BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28370.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484614 jgi|Araly1|484614|fgenesh2_kg.5__606__AT3G28370.1 1219 0.0
> Ahg484614 jgi|Araly1|484614|fgenesh2_kg.5__606__AT3G28370.1
Length=807
Score = 1219 bits (660), Expect = 0.0
Identities = 760/809 (94%), Gaps = 4/809 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGGAATCGATACGCAGAAGCAGCTTCTCTCTCTGATCCGCGATTTCACCTCTGAA 60
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGGAATCGATACACAGAAGCAGCTTCTCTCTCTAATCCGCGATTTCACCTCTGAA 60
Query 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGAATAGAGATTTTACAATCG 120
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 61 AGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGGATCGAGATTTTGCAATCG 120
Query 121 GAAGTTGAAGCAGCGAATTCAGAAGTTGAGAAA-GCGAAGCGTATCAAAGAAGTAGCGGA 179
||| | ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 121 GAAATCGAAGCAGCGAATTCAGAAGTTGA-AAATGCGAAGCGTATCAAAGAAGTGGCGGA 179
Query 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAATGATGCTACGATTCAATCTCT 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAACGATGCTACGATTCAATCTCT 239
Query 240 CGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTACTACTATTGGCAGTGAAGTTGATGC 299
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 240 GGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTTCTACTGTTGGCAGTGAAGTTGATGC 299
Query 300 TCTTAAGAACAAGGAAGGATTACTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTAAGAACAAGGAAGGATTTTTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAA 359
Query 360 CAAGGAGATAAGGGAGTTCCAGAAAACAGTAGATTCGAGTTT-GAGCAGTGATGATGGTA 418
||||||||||||||||||||||| ||||||||||| || ||| | ||| ||||||| |||
Sbjct 360 CAAGGAGATAAGGGAGTTCCAGAGAACAGTAGATTTGACTTTTG-GCAATGATGATAGTA 418
Query 419 TTGGCATTACAGCAAATGTCAAAGCTTCTGAAGACGGTTCTGGAGCTGATTTAGAAGCTA 478
|||||| ||| ||||||||||||||| ||| || |||||||||||||||| ||||||||
Sbjct 419 CTGGCATAACACCAAATGTCAAAGCTTTTGAGGATGGTTCTGGAGCTGATTCAGAAGCTA 478
Query 479 TAAAGGGAATGCTATCTGAAGTAAATTCTCAATTGGCAAAAGAGGAAGAAGGATACCTGG 538
| ||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||
Sbjct 479 TCAAGGGAATGCTATCTGATTTAAGTTCTCAATTAGAAAAAGAGGAAGAAGGATACCTGG 538
Query 539 CAGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTTGACGACTATGAGAAGAAAATGT 598
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 539 CTGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTCGATGACTATGAGAAGAAAATGT 598
Query 599 CACTCATGGAGGCCATTACAGACAAAACGAATTCAGTGCAAGTTCTCACTAGATATCCTT 658
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 CACTCATGGAGGCCATAACAGACAAAACGAATTCAGTGCAAGTTCTCGCTAGATATCCTT 658
Query 659 TAATTCTGTTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAGGAGATGCCGATGC 718
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TAATCCCATTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAAGAGATGCCGATGC 718
Query 719 CAACATTGCGAGGCGGAAAATTTGGAAGTCCTGAGCTTACTTCTTCAGGGAGATCAAGAT 778
||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 CAACATTGCCAGGCAGAAAATTTGGAAGTCTTGAGCTTACTTCTTCAGGGAGATCAAGAT 778
Query 779 ATGGAGGTGTCTTAGTTAAAAGCCGATCT 807
|||||||||||||||||||||||| ||||
Sbjct 779 ATGGAGGTGTCTTAGTTAAAAGCCAATCT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5