BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28410.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892184 jgi|Araly1|892184|Al_scaffold_0006_180 1736 0.0
> Ahg892184 jgi|Araly1|892184|Al_scaffold_0006_180
Length=1407
Score = 1736 bits (940), Expect = 0.0
Identities = 1274/1428 (89%), Gaps = 51/1428 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAAAAGGCGAGAGAAACGGGGCCGACG---ACGAC--A-ACATCGTAGCCACCGC 54
|||||||| |||||||||||||||||||| || ||| | | | | | ||||||||||
Sbjct 1 ATGGCGAATAGGCGAGAGAAACGGGGCCGGCGAAAACGTCGTAGAAAGCCTAGCCACCGC 60
Query 55 AAAATCCAACGAATAATCGATGGTGCAGATTTCATCAACTATATGCCAGATGATATCCTT 114
|||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||
Sbjct 61 AAAATCAAACGAATAATCGACGGTGCAGATTTCATCAACTCTATGCCAGATGAGATCCTT 120
Query 115 CACCATATTCTCTCCTTTATTCCCACCGATTTGGCCATGAGAACTTCCGTCTTAT-CACG 173
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || |
Sbjct 121 CACCATATTCTCTCCCTTATTCCCACCGATTTGGCCATGAAAACTTCCGTCTTATCCA-G 179
Query 174 ACGATGGAGGCATGTATGGTGCGAGACACCTTGTCTCG--A-C-A----T-TAAACTCAA 224
|||||||||||||||||||||||||||||||||||||| | | | | || ||||||
Sbjct 180 ACGATGGAGGCATGTATGGTGCGAGACACCTTGTCTCGACATCAATGTGTGTAGACTCAA 239
Query 225 GC-ACGGAGA-GACGAACCAAACCCTAACTTCCTACACGGCTCCCATAATAACTAGTTTC 282
| |||| | | |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 240 -CGGCGGA-ACGGTGAACCAAACCCTAACTTCCTACACGGCTCCCAAAATCACTAGTTTC 297
Query 283 AAACTTGTTATGGACCTT--AACGACAACACTGTACCCCAGGTTGATAGCTGGATCGAGT 340
|||||| ||| || ||| | | ||||||||| |||| || ||||||||||||||||||
Sbjct 298 AAACTTCTTA-CGAGCTTGGATC-ACAACACTGCACCCGAGATTGATAGCTGGATCGAGT 355
Query 341 TTGCTCTCTCCCGCAATGTGCAAAATCTGTCTGTGTTCGTTAGGGATTTCACATACAC-C 399
| || ||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 356 TCCCTATCTCCCGCAATGTGCAAAATCTGTCTGTGTTCGTTAGGGATTTCAAATAC-CGC 414
Query 400 AAGACTTACAGATTT-CCAGATAT-CTTCTATATCAGTTCCTCCTTAAAGCAACTCGA-C 456
||||||||||| ||| |||| | | ||| ||| ||||||||||||||||||||||| | |
Sbjct 415 AAGACTTACAG-TTTCCCAG-TTTCCTTTTATCTCAGTTCCTCCTTAAAGCAACTC-ACC 471
Query 457 GTGACGTTGGACTTTTTTGATATGATTCCCACATGCGCAGTGTCTTGGAAATCCCTAAGG 516
|||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 472 GTGACGTTAGACTTTTTTTATATGACTCCCACATGCAAAGTGTCTTGGAAATCCCTAAGG 531
Query 517 AACTTAACACTGCGTTTTTGTCAAA-TTCCAGACGAATCCA-TGCATAATATTCTCTCTG 574
||||| |||||||| |||| ||| ||||||| | ||||| || |||||||||||||||
Sbjct 532 AACTTGGCACTGCGTCGTTGT-AAACTTCCAGATGGATCCATTG-ATAATATTCTCTCTG 589
Query 575 GCTGTCCAATTCTCGAAAGCTTGACACTGGATACATGCAGATTACTTGAGCGTCTTGATC 634
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 590 GCTGTCCAATTCTCGAAAGCTTGACATTGGGTACATGCAGATTACTTGAGCGTCTTGATC 649
Query 635 TGAGTAAATCACCGAATCTGAGGAGATTGGATATAAATAGGCAATATCGCCG-CACAGGA 693
||||||||||||||| |||||||||||||||||||||| |||||||| | || |||||||
Sbjct 650 TGAGTAAATCACCGAGTCTGAGGAGATTGGATATAAATCGGCAATATTG-CGACACAGGA 708
Query 694 CCAATTGCGATTGTTGCGCCACACATCTATTATTTGAGACTGACATACTCTAGTACACCA 753
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 709 CCAATTGCGATTGTAGCGCCACACATCCATTATTTGAGACTGACATACTCTAGTACACCA 768
Query 754 TCTACTATAGTGGATGTCTCCTCTTTGAGCGAAGCCAACCTTAACATTATCAGCGATCGC 813
|||||| || ||||||| |||||||||| |||||| |||||||||||||||| | | ||
Sbjct 769 TCTACTTTACTGGATGTATCCTCTTTGATCGAAGCTAACCTTAACATTATCA--G-TAGC 825
Query 814 CTACTCTCTCCCTTGACTGCTGATCGTTATCAAACCATGGCGCTGGAGATGCTATCAAAA 873
| ||||| ||||||||||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 826 CGACTCTGTCCCTTGACTGCTGATCGTTATCAAACTATGGCACTAAAGATGCTAGCAAAC 885
Query 874 TTTCACAACGTAAAGAGGCTTACTGTTGGGGAAACCATTCTTCAGATTCTATCTCTCGCC 933
| ||||||||| |||||||||||||||| |||||| ||||||||||| |||| || |||
Sbjct 886 TCGCACAACGTAGAGAGGCTTACTGTTGGAGAAACCCTTCTTCAGATTTTATCGCTTGCC 945
Query 934 GAGCTCCGCGGTGTTCCTTTCCCAACGCTCAAGGTCCAAACTTTGACTGTTAAAACGGAG 993
|||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 946 GAGCTCCGTGGTGTTCCTTTCCCAACACTCAAGGTCCAAACTTTGATTGTTAAAACGGAG 1005
Query 994 TTCGTTCGATCTGTAATCCCTGGTATATCAAGGTTACTACAGAATTCACCTGGATTAAAG 1053
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1006 TTCGTTCGATCTGTAATCCCTGGTATATCAAGGCTACTACAGAATTCACCTGGATTAAAG 1065
Query 1054 AAGCTAACATTACACAC-ATTGCAGCTAAGCCACGACATAATGGAAATGCATCCTTTAAA 1112
||||||||||||||||| || ||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1066 AAGCTAACATTACACACGAT-GCAGCAAAGCCACGTCATAATGGATATGCATCCTTTAAA 1124
Query 1113 AGGTTTATATCCGGATCAATGTTGGAGATCAACATGTGAGGTGTTTCCTACCTCAAAGGA 1172
|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1125 AGGTTTCTATCCGGATCAATGTTGGAGATCAAAATGTGAGATGTTTCCTACCTCAAAGGA 1184
Query 1173 GATCTACAAGATGTTGGGTTGTAATGATGCAACGTCGAAACTCGTGGCTTCGTT-TATGA 1231
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1185 GATCTATGAGATGTTGGGTTGTAATGATGCAACGTCGAAACTCGTGGCTTCGTTCTCCGA 1244
Query 1232 ATTTGGTGCTGAGAAACGCAAAGACGCTAGAGAGGATGGTTGTTTGGTTGGGAGGCA-TC 1290
||| |||| |||||||||||||||| ||||||| ||||||||| ||||||||||| | |
Sbjct 1245 ATT-GGTGTTGAGAAACGCAAAGACACTAGAGATGATGGTTGTATGGTTGGGAGGTAGT- 1302
Query 1291 TACTTTAATGGTGATGCACCATGGTTTGAAGAAGAGCTGTTTGACATGGTTGAAACACTT 1350
||||| |||| |||||||| |||||| || | | ||| || | ||||||| |||||||
Sbjct 1303 TACTTCAATGATGATGCACAATGGTTCCAACA-G--CTGCTTCAGATGGTTGCAACACTT 1359
Query 1351 TCTCACAACAATAATGTCTCCATTTTGCTCAAACAAAGCAATTGCTAA 1398
|||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1360 TCTCACGACAATAATGTCTCCATTTTGCTCAAACGAAGCAATTGCTAA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5