BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28420.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484617 jgi|Araly1|484617|fgenesh2_kg.5__609__AT3G28420.1 944 0.0
> Ahg484617 jgi|Araly1|484617|fgenesh2_kg.5__609__AT3G28420.1
Length=750
Score = 944 bits (511), Expect = 0.0
Identities = 698/781 (89%), Gaps = 42/781 (5%)
Strand=Plus/Plus
Query 53 atagagagaacaatggagatgaagagagacattagagt---------ggaggaagagaaC 103
||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 ATAGAGAGAACAATGGAAATGAAGAGAGACATTAGAGTGGAGAAGAAGGAGGAAGAGAAC 60
Query 104 ATGTGTACTTCATTGTTGACTGCAGTTGTTGTTCTTTCAATGGCTTGTCTTAAACACTTC 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTGTACTTCATTGTTGACTGCAGTTGTTGTTCTTTCAATGGCTTGTCTTAAACACTTC 120
Query 164 TCTTCTGTATCGTATTTGATCGAGCAATGGCGTTCGTTGGTGTTTCTTATACTCAACGTC 223
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 121 TCTTCTGTATCGTATTTGATCGAGCAATGGCGTTCTTTGGTCTTTCTTCTACTCAACGTC 180
Query 224 GTTCTCTTAGCCGTTTACTTTACCTCGACTCGTCCTAACCTCGGGA-GGAGTCATGATTT 282
|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 181 GTTCTCTTAGCCGTTTACTTTACCTCGACTCGTCCTAACC-CCGGAGGGACTCATGATTT 239
Query 283 CAAGACTCGTCGAGGAGGTAGATTGAGAATGATGCGAGAGAAAAAGAATAAGATTAAGAA 342
||||||||||||||||||||||||||| ||||||| ||| || ||| |||||
Sbjct 240 CAAGACTCGTCGAGGAGGTAGATTGAGGATGATGC--GAG----AG---AAG---AAGAA 287
Query 343 GAAGAAGACAAGGGTGGTGGTGGAACCGGCTTGTTTTGACCAAGGTTTCTTACTTGTTGA 402
|||||||||||| ||||||||||||||||||||| ||| |||| |||| || | |||||
Sbjct 288 TAAGAAGACAAGGATGGTGGTGGAACCGGCTTGTTCTGATCAAGATTTCGTAGTCGTTGA 347
Query 403 GCCAAAGGAAGTGATCAAGAAGTGTGTTTTAGTGGAGGAGACGAAAAGAGTTTGCCCTAA 462
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 348 GCCAAAGGAAGTGATCAAGAAGTGTGTTTTAGTGGAGGAGACGAAAAGGGTTTGTCCTGA 407
Query 463 ATTTGAGGAAACTGTGAAAGATTGCTTGTTTCACAAGAAAGAAATAGAGTATAATGGAGA 522
||| |||||||||||||||||||||||||||||||||||||| |||| | ||| |||||
Sbjct 408 ATTCAAGGAAACTGTGAAAGATTGCTTGTTTCACAAGAAAGAAGTAGACTTTAAAGGAGA 467
Query 523 AGAAGATGAATTTGAGCCAGGGAGGTTATCCAATGAGGAGTTGAACGAGAGAGTTGAAGC 582
|||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 468 AGAAGATGAATTCGAGCCAGGGAGGTTATCGAATGAGGAGCTGAACGAGAGAGTAGAAGC 527
Query 583 GTTCATCACGACGTTTAGACAACATTTGGTGCTAGATGCG-AGACGAGGTAGAGACAGAG 641
||||||||||||||| ||||||||||||||||| |||||| | | |||||||||| ||||
Sbjct 528 GTTCATCACGACGTTCAGACAACATTTGGTGCTTGATGCGCAAA-GAGGTAGAGATAGAG 586
Query 642 AAACTGATCAGAAGATGAGACCAAAAGACTCTGACAGTAGCTTTTTAGTTCGGGAAGTCA 701
|||| || |||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 587 AAACCGACCAGAAGATGAGATCAAAAGACTCTGACATTAGCTTTTTAGGTCGGGAAGTCG 646
Query 702 CTTGTTTGGTTTAAGAGTTTCTCTCTACAATCtttttttCATCTTAAGATTCGTTCGGTT 761
|||||| ||||||||||||||||| | | | | | || ||||||||||||
Sbjct 647 CTTGTTCGGTTTAAGAGTTTCTCT-T-C--T-T-------A----AA-ATTCGTTCGGTT 689
Query 762 TTGTTCGTTCTTTGGCTTCGTTTCTTTTGTGAGTTTGAGCTAATAGCTCAAAAGATCGCA 821
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 690 TTGTTCGTTCTTTGGCTTCGTTTATTTTATGAGTTTGAGCTAATAGCTCAAAAGATCGCA 749
Query 822 T 822
|
Sbjct 750 T 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5