BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28450.1 Length=2116 Score E Sequences producing significant alignments: (Bits) Value Ahg484619 jgi|Araly1|484619|fgenesh2_kg.5__611__AT3G28450.1 3038 0.0 > Ahg484619 jgi|Araly1|484619|fgenesh2_kg.5__611__AT3G28450.1 Length=2065 Score = 3038 bits (1645), Expect = 0.0 Identities = 1953/2097 (93%), Gaps = 40/2097 (2%) Strand=Plus/Plus Query 23 TTCATTGGCAGATACACAAAATCTTTAATTCTTAATCCAAACCCAGAAACAACCTCTGAA 82 ||||||||||||||||| ||||||||||||||||| ||||||||||||| || || Sbjct 1 TTCATTGGCAGATACAC-AAATCTTTAATTCTTAAACCAAACCCAGAAA-AA------AA 52 Query 83 ACCACTTCATCATCCATGAAAGAGATCGGCTCAAAACCAAGAAAGTTACTTCCTTTATGC 142 | ||||||||||| ||| |||||||||| |||||||||||||||||| | | | Sbjct 53 A-AACTTCATCATCAATGGAAGAGATCGGGTCAAAACCAAGAAAGTTA-------T-T-C 102 Query 143 TTCATCATCTTCCTCTGTTTTTGTTCCTCTGTTATGGCTGCAGATGAAGACGACATAAGA 202 |||||| ||||||| | | ||| |||||||||||||||||||||||||| |||||||||| Sbjct 103 TTCATCTTCTTCCT-T-TGTTT-TTCCTCTGTTATGGCTGCAGATGAAGGCGACATAAGA 159 Query 203 TGCTTAAGAGGACTCAAAGCATCTCTCACAGATCCTCAAAACGCGTTGAAATCATGGAAC 262 |||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 160 TGCTTAAGAGGACTCAAAACCTCTCTCACCGATCCTCAAAACGCGTTGAAATCATGGAAC 219 Query 263 TTCGACAACACAACTCTTGGGTTTCTCTGTAACTTCGTTGGTGTGTCTTGTTGGAACAAT 322 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 220 TTCGACAACACAACTCTTGGGTTCCTCTGTAACTTCGTTGGTGTGTCTTGTTGGAACAAT 279 Query 323 CAGGAGAATAGGGTTATCAATCTTGAGCTTCGTGATATGGGTTTATCTGGTAAAATCCCA 382 || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 280 CAAGAAAATAGGGTTATCAATCTTGAGCTTCGTGACATGGGTTTATCTGGTAAAATCCCA 339 Query 383 GATTCTCTTCAATACTGTGCGAGTTTACAAAAACTTGATCTTTCTAGTAATCGATTGTCT 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 GATTCTCTTCAATACTGTGCGAGTTTACAAAAACTTGATCTTTCTAGTAATCGATTGTCT 399 Query 443 GGTAATATCCCTACAGAGTTGTGTAATTGGTTACCTTTTTTGGTATCTCTTGATTTGTCA 502 ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 400 GGTAATATCCCTAAAGAGTTGTGTAATTGGTTACCGTTTTTGGTGTCTCTTGATTTGTCG 459 Query 503 AACAATGAATTGAATGGTGAGATTCCTCCTGATTTAGCTAAGTGTAGCTTTGTGAATTCT 562 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 460 AATAATGAATTGAATGGTGAGATTCCTCCTGATTTAGCTAAGTGTAGCTTTGTGAACTCT 519 Query 563 TTGGTTTTGTCTGATAACCGGCTTTCGGGTCAAATCCCGGTTCAGTTCTCGGCTTTAGGG 622 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 520 TTGGTTTTGTCTGATAACCGGCTTTCCGGTCAAATCCCGGTTCAGTTCTCGGCTTTAGGG 579 Query 623 AGGTTAGGGAGGTTCTCTGTTGCTAATAATGATCTCTCAGGTCGCATTCCTGTGTTCTTT 682 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 580 AGGTTAGGGAGGTTCTCTGTTGCTAATAATGATCTCTCAGGTCGCATTCCTGTCTTCTTT 639 Query 683 AGCTCACCGAGTTATTCCTCTGATGATTTTA-GTGGGAATAAAGGTCTTTGTGGTCGTCC 741 |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 640 AGCTCACCGAGTTATTCCTCTGATGACTTTAAG-GGGAATAAAGGTCTTTGTGGTCGTCC 698 Query 742 TTTATCTTCGAGTTGTGGTGGTTTAAGTAAGAAGAATCTTGGGATAATAATTGCAGCTGG 801 ||| ||||||||||| ||||| || |||||||||||||||| ||| || ||||||||||| Sbjct 699 TTTGTCTTCGAGTTGCGGTGGATTGAGTAAGAAGAATCTTGCGATTATCATTGCAGCTGG 758 Query 802 TGTGTTTGGTGCTGCTGCATCAATGTTGTTAGCTTTTGGGATTTGGTGGTATTATCATTT 861 |||||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| Sbjct 759 TGTGTTTGGTGCTGCTGCGTCGATGTTTTTGGCTTTTGGGATTTGGTGGTATTACCATTT 818 Query 862 GAAGTGGACAAGGAGACGAAGAAGCGGTTTAACCGAAGTAGGAGTTAGCGGTTTAGCGCA 921 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 819 GAAGTGGACAAGAAGACGAAGAAGCGGTTTAACCGAAGTAGGAGTTAGCGGTTTGGCGAA 878 Query 922 GAGACTTCGTAGTCATAAGCTTACTCAAGTGTCTTTGTTTCAGAAGCCTTTGGTTAAAGT 981 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 879 GAGACTTCGTAGTCATAAGCTTACTCAAGTTTCTTTGTTTCAGAAGCCTTTGGTTAAGGT 938 Query 982 TAAACTTGGGGATTTGATGGCTGCAACTAATAACTTCAACTCAGAGAACATTATTGTTTC 1041 ||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||| Sbjct 939 TAAACTTGGGGATTTGATGGCTGCAACTAATAATTTCAGCTCGGGGAACATTATTGTTTC 998 Query 1042 CACTAGGACTGGGACTACCTATAAGGCGCTTCTTCCGGATGGTTCAGCGCTTGCGGTGAA 1101 |||||||||||| || || |||||||||||||||||||||||||||||||||||||| || Sbjct 999 CACTAGGACTGGAACAACGTATAAGGCGCTTCTTCCGGATGGTTCAGCGCTTGCGGTTAA 1058 Query 1102 GCATTTGAGTACGTGTAAGCTCGGGGAAAGGGAGTTTCGGTATGAGATGAATCAGCTATG 1161 |||||| || ||||||||||||||||| ||||||||||||||||||||||||||| | || Sbjct 1059 GCATTTAAGCACGTGTAAGCTCGGGGAGAGGGAGTTTCGGTATGAGATGAATCAGTTGTG 1118 Query 1162 GGAGCTTCGTCATTCTAACTTAGCACCGCTTCTTGGTTTCTGCGTTGTGGAAGAAGAGAA 1221 ||||||||||||| |||||||||| || |||||||| | |||||||||||||||||| || Sbjct 1119 GGAGCTTCGTCATCCTAACTTAGCGCCACTTCTTGGATACTGCGTTGTGGAAGAAGATAA 1178 Query 1222 GTTTCTTGTTTACAAGTATATGTCTAATGGGACACTTCACTCGTTGTTGGATTCAAATAG 1281 |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct 1179 ACTTCTTGTTTACAAGTACATGTCTAATGGGACGCTTCACTCGTTGCTGGATTCAAAT-G 1237 Query 1282 GGGT-GAATTAGATTGGTCGACTCGGTTTAGGATTGGTTTAGGTGCTGCAAGAGGTTTAG 1340 |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1238 GGGTTGAATTAGATTGGTCTACTCGGTTTAGGATTGGTTTAGGTGCTGCAAGGGGTTTAG 1297 Query 1341 CTTGGCTTCACCATGGATGTCGACCTCCAATTCTACACCAAAACATTTGTTCAAGTGTGA 1400 |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 1298 CTTGGCTTCACCATGGATGTCGACCTCCGATACTTCACCAAAACATTTGTTCAAGTGTGA 1357 Query 1401 TTCTCATTGACGAGGATTTCGATGCAAGGATAATAGATTCAGGGCTTGCAAGGCTTATGG 1460 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1358 TTCTCATTGACGAGGATTTCGATGCAAGGATTATAGATTCAGGGCTTGCAAGGCTTATGG 1417 Query 1461 TTCCCTCGGATAACAATGAGAGTAGTTTCATGACTGGTGACTTAGGAGAGTTTGGTTATG 1520 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1418 TTCCCTCGGATAACAATGAGAGTAGTTTCATGACTGGTGATTTAGGAGAGTTTGGTTATG 1477 Query 1521 TAGCTCCTGAATATTCTACCACAATGCTAGCATCATTAAAAGGTGATGTATATGGACTCG 1580 ||||||| || |||||||| ||||||||||| ||| ||||||| |||||||||||||||| Sbjct 1478 TAGCTCCAGAGTATTCTACTACAATGCTAGCCTCACTAAAAGGCGATGTATATGGACTCG 1537 Query 1581 GTGTTGTCCTCTTGGAGTTGGCTACAGGGCTAAAAGCTGTAGGAGGTGAAGGTTTTAAAG 1640 |||||||||||||||||||||| ||||||||||||||| ||||| | ||||| ||||||| Sbjct 1538 GTGTTGTCCTCTTGGAGTTGGCCACAGGGCTAAAAGCTCTAGGACGCGAAGGCTTTAAAG 1597 Query 1641 GGAGTTTGGTGGATTGGGTGAAACAGCTTGAAAGCTCAGGTAGAATCGCTGAGACATTCG 1700 |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1598 GGAGTTTGGTAGATTGGGTGAAACAGCTCGAAAGCTCAGGAAGAATCGCTGAGACATTCG 1657 Query 1701 ATGAAAACATTCGAGGGAAAGGACATGACGAAGAGATCTCGAAATTTGTTGAGATTGCTC 1760 |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1658 ATGAAAACATTCGAGGGAAAGGACATGACGAAGAAATCTTGAAATTTGTTGAGATTGCT- 1716 Query 1761 T-TAACTGTGTGAGTTCAAGACCTAAAGAGAGATGGTCAATGTTTCAGGCATACCAGTCA 1819 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1717 TGTAACTGTGTGAGTTCAAGACCTAAAGAGAGATGGTCAATGTTTCAGGCATACCAGTCA 1776 Query 1820 CTGAAAGCTATTGCTGAGAAACAAGGCTATTCGTTCTCCGAACAAGACGACGACTTCCCT 1879 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1777 TTGAAAGCTATTGCTGAGAAACAAGGCTATTCGTTCTCAGAACAAGACGACGACTTCCCT 1836 Query 1880 TTGATTTTCGACACGCAAGAGAACGAGAAAGTGTGAAAATGAACCTTTTATGATACGAGG 1939 ||||| |||||||||||||||||||||| ||| ||||||||||||||| ||||| |||| Sbjct 1837 TTGATCTTCGACACGCAAGAGAACGAGACAGTTTGAAAATGAACCTTT-ATGATG-GAGG 1894 Query 1940 AGGAAGTAAGAG--TATAATTATTTGTTGTCTATATCATCTTGTACTACTTGTAGAGACA 1997 ||||| |||||| |||||||||||||||||||||| || || |||||||||||||| | Sbjct 1895 AGGAAATAAGAGAGTATAATTATTTGTTGTCTATATTTTCCTGCACTACTTGTAGAGAGA 1954 Query 1998 CTATATGTTATTGTAAAAACAGAAATGTATATGTTATTTGTTTTCTCTTGTGTCAAAGTC 2057 || | | ||||||||||||||| |||||||||||||||||||||||||| ||||| || Sbjct 1955 CT-T-T---ATTGTAAAAACAGAAGTGTATATGTTATTTGTTTTCTCTTGTATCAAA-TC 2008 Query 2058 TTTA-GACATGTTATGTGTTGCAAGTGTGT-CTTT-CTATAGTATTGGAAGAGTGAC 2111 |||| |||||||||||| |||||||||||| |||| ||||||| ||||||||||||| Sbjct 2009 TTTAAGACATGTTATGTTTTGCAAGTGTGTTCTTTTCTATAGTCTTGGAAGAGTGAC 2065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79608612050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5