BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28450.1
Length=2116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484619 jgi|Araly1|484619|fgenesh2_kg.5__611__AT3G28450.1 3038 0.0
> Ahg484619 jgi|Araly1|484619|fgenesh2_kg.5__611__AT3G28450.1
Length=2065
Score = 3038 bits (1645), Expect = 0.0
Identities = 1953/2097 (93%), Gaps = 40/2097 (2%)
Strand=Plus/Plus
Query 23 TTCATTGGCAGATACACAAAATCTTTAATTCTTAATCCAAACCCAGAAACAACCTCTGAA 82
||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||
Sbjct 1 TTCATTGGCAGATACAC-AAATCTTTAATTCTTAAACCAAACCCAGAAA-AA------AA 52
Query 83 ACCACTTCATCATCCATGAAAGAGATCGGCTCAAAACCAAGAAAGTTACTTCCTTTATGC 142
| ||||||||||| ||| |||||||||| |||||||||||||||||| | | |
Sbjct 53 A-AACTTCATCATCAATGGAAGAGATCGGGTCAAAACCAAGAAAGTTA-------T-T-C 102
Query 143 TTCATCATCTTCCTCTGTTTTTGTTCCTCTGTTATGGCTGCAGATGAAGACGACATAAGA 202
|||||| ||||||| | | ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 103 TTCATCTTCTTCCT-T-TGTTT-TTCCTCTGTTATGGCTGCAGATGAAGGCGACATAAGA 159
Query 203 TGCTTAAGAGGACTCAAAGCATCTCTCACAGATCCTCAAAACGCGTTGAAATCATGGAAC 262
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 160 TGCTTAAGAGGACTCAAAACCTCTCTCACCGATCCTCAAAACGCGTTGAAATCATGGAAC 219
Query 263 TTCGACAACACAACTCTTGGGTTTCTCTGTAACTTCGTTGGTGTGTCTTGTTGGAACAAT 322
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 220 TTCGACAACACAACTCTTGGGTTCCTCTGTAACTTCGTTGGTGTGTCTTGTTGGAACAAT 279
Query 323 CAGGAGAATAGGGTTATCAATCTTGAGCTTCGTGATATGGGTTTATCTGGTAAAATCCCA 382
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 280 CAAGAAAATAGGGTTATCAATCTTGAGCTTCGTGACATGGGTTTATCTGGTAAAATCCCA 339
Query 383 GATTCTCTTCAATACTGTGCGAGTTTACAAAAACTTGATCTTTCTAGTAATCGATTGTCT 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GATTCTCTTCAATACTGTGCGAGTTTACAAAAACTTGATCTTTCTAGTAATCGATTGTCT 399
Query 443 GGTAATATCCCTACAGAGTTGTGTAATTGGTTACCTTTTTTGGTATCTCTTGATTTGTCA 502
||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 400 GGTAATATCCCTAAAGAGTTGTGTAATTGGTTACCGTTTTTGGTGTCTCTTGATTTGTCG 459
Query 503 AACAATGAATTGAATGGTGAGATTCCTCCTGATTTAGCTAAGTGTAGCTTTGTGAATTCT 562
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 460 AATAATGAATTGAATGGTGAGATTCCTCCTGATTTAGCTAAGTGTAGCTTTGTGAACTCT 519
Query 563 TTGGTTTTGTCTGATAACCGGCTTTCGGGTCAAATCCCGGTTCAGTTCTCGGCTTTAGGG 622
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 520 TTGGTTTTGTCTGATAACCGGCTTTCCGGTCAAATCCCGGTTCAGTTCTCGGCTTTAGGG 579
Query 623 AGGTTAGGGAGGTTCTCTGTTGCTAATAATGATCTCTCAGGTCGCATTCCTGTGTTCTTT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 580 AGGTTAGGGAGGTTCTCTGTTGCTAATAATGATCTCTCAGGTCGCATTCCTGTCTTCTTT 639
Query 683 AGCTCACCGAGTTATTCCTCTGATGATTTTA-GTGGGAATAAAGGTCTTTGTGGTCGTCC 741
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 640 AGCTCACCGAGTTATTCCTCTGATGACTTTAAG-GGGAATAAAGGTCTTTGTGGTCGTCC 698
Query 742 TTTATCTTCGAGTTGTGGTGGTTTAAGTAAGAAGAATCTTGGGATAATAATTGCAGCTGG 801
||| ||||||||||| ||||| || |||||||||||||||| ||| || |||||||||||
Sbjct 699 TTTGTCTTCGAGTTGCGGTGGATTGAGTAAGAAGAATCTTGCGATTATCATTGCAGCTGG 758
Query 802 TGTGTTTGGTGCTGCTGCATCAATGTTGTTAGCTTTTGGGATTTGGTGGTATTATCATTT 861
|||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct 759 TGTGTTTGGTGCTGCTGCGTCGATGTTTTTGGCTTTTGGGATTTGGTGGTATTACCATTT 818
Query 862 GAAGTGGACAAGGAGACGAAGAAGCGGTTTAACCGAAGTAGGAGTTAGCGGTTTAGCGCA 921
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 819 GAAGTGGACAAGAAGACGAAGAAGCGGTTTAACCGAAGTAGGAGTTAGCGGTTTGGCGAA 878
Query 922 GAGACTTCGTAGTCATAAGCTTACTCAAGTGTCTTTGTTTCAGAAGCCTTTGGTTAAAGT 981
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 879 GAGACTTCGTAGTCATAAGCTTACTCAAGTTTCTTTGTTTCAGAAGCCTTTGGTTAAGGT 938
Query 982 TAAACTTGGGGATTTGATGGCTGCAACTAATAACTTCAACTCAGAGAACATTATTGTTTC 1041
||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||
Sbjct 939 TAAACTTGGGGATTTGATGGCTGCAACTAATAATTTCAGCTCGGGGAACATTATTGTTTC 998
Query 1042 CACTAGGACTGGGACTACCTATAAGGCGCTTCTTCCGGATGGTTCAGCGCTTGCGGTGAA 1101
|||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 999 CACTAGGACTGGAACAACGTATAAGGCGCTTCTTCCGGATGGTTCAGCGCTTGCGGTTAA 1058
Query 1102 GCATTTGAGTACGTGTAAGCTCGGGGAAAGGGAGTTTCGGTATGAGATGAATCAGCTATG 1161
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1059 GCATTTAAGCACGTGTAAGCTCGGGGAGAGGGAGTTTCGGTATGAGATGAATCAGTTGTG 1118
Query 1162 GGAGCTTCGTCATTCTAACTTAGCACCGCTTCTTGGTTTCTGCGTTGTGGAAGAAGAGAA 1221
||||||||||||| |||||||||| || |||||||| | |||||||||||||||||| ||
Sbjct 1119 GGAGCTTCGTCATCCTAACTTAGCGCCACTTCTTGGATACTGCGTTGTGGAAGAAGATAA 1178
Query 1222 GTTTCTTGTTTACAAGTATATGTCTAATGGGACACTTCACTCGTTGTTGGATTCAAATAG 1281
|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct 1179 ACTTCTTGTTTACAAGTACATGTCTAATGGGACGCTTCACTCGTTGCTGGATTCAAAT-G 1237
Query 1282 GGGT-GAATTAGATTGGTCGACTCGGTTTAGGATTGGTTTAGGTGCTGCAAGAGGTTTAG 1340
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1238 GGGTTGAATTAGATTGGTCTACTCGGTTTAGGATTGGTTTAGGTGCTGCAAGGGGTTTAG 1297
Query 1341 CTTGGCTTCACCATGGATGTCGACCTCCAATTCTACACCAAAACATTTGTTCAAGTGTGA 1400
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1298 CTTGGCTTCACCATGGATGTCGACCTCCGATACTTCACCAAAACATTTGTTCAAGTGTGA 1357
Query 1401 TTCTCATTGACGAGGATTTCGATGCAAGGATAATAGATTCAGGGCTTGCAAGGCTTATGG 1460
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1358 TTCTCATTGACGAGGATTTCGATGCAAGGATTATAGATTCAGGGCTTGCAAGGCTTATGG 1417
Query 1461 TTCCCTCGGATAACAATGAGAGTAGTTTCATGACTGGTGACTTAGGAGAGTTTGGTTATG 1520
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1418 TTCCCTCGGATAACAATGAGAGTAGTTTCATGACTGGTGATTTAGGAGAGTTTGGTTATG 1477
Query 1521 TAGCTCCTGAATATTCTACCACAATGCTAGCATCATTAAAAGGTGATGTATATGGACTCG 1580
||||||| || |||||||| ||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1478 TAGCTCCAGAGTATTCTACTACAATGCTAGCCTCACTAAAAGGCGATGTATATGGACTCG 1537
Query 1581 GTGTTGTCCTCTTGGAGTTGGCTACAGGGCTAAAAGCTGTAGGAGGTGAAGGTTTTAAAG 1640
|||||||||||||||||||||| ||||||||||||||| ||||| | ||||| |||||||
Sbjct 1538 GTGTTGTCCTCTTGGAGTTGGCCACAGGGCTAAAAGCTCTAGGACGCGAAGGCTTTAAAG 1597
Query 1641 GGAGTTTGGTGGATTGGGTGAAACAGCTTGAAAGCTCAGGTAGAATCGCTGAGACATTCG 1700
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1598 GGAGTTTGGTAGATTGGGTGAAACAGCTCGAAAGCTCAGGAAGAATCGCTGAGACATTCG 1657
Query 1701 ATGAAAACATTCGAGGGAAAGGACATGACGAAGAGATCTCGAAATTTGTTGAGATTGCTC 1760
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1658 ATGAAAACATTCGAGGGAAAGGACATGACGAAGAAATCTTGAAATTTGTTGAGATTGCT- 1716
Query 1761 T-TAACTGTGTGAGTTCAAGACCTAAAGAGAGATGGTCAATGTTTCAGGCATACCAGTCA 1819
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TGTAACTGTGTGAGTTCAAGACCTAAAGAGAGATGGTCAATGTTTCAGGCATACCAGTCA 1776
Query 1820 CTGAAAGCTATTGCTGAGAAACAAGGCTATTCGTTCTCCGAACAAGACGACGACTTCCCT 1879
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1777 TTGAAAGCTATTGCTGAGAAACAAGGCTATTCGTTCTCAGAACAAGACGACGACTTCCCT 1836
Query 1880 TTGATTTTCGACACGCAAGAGAACGAGAAAGTGTGAAAATGAACCTTTTATGATACGAGG 1939
||||| |||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||
Sbjct 1837 TTGATCTTCGACACGCAAGAGAACGAGACAGTTTGAAAATGAACCTTT-ATGATG-GAGG 1894
Query 1940 AGGAAGTAAGAG--TATAATTATTTGTTGTCTATATCATCTTGTACTACTTGTAGAGACA 1997
||||| |||||| |||||||||||||||||||||| || || |||||||||||||| |
Sbjct 1895 AGGAAATAAGAGAGTATAATTATTTGTTGTCTATATTTTCCTGCACTACTTGTAGAGAGA 1954
Query 1998 CTATATGTTATTGTAAAAACAGAAATGTATATGTTATTTGTTTTCTCTTGTGTCAAAGTC 2057
|| | | ||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1955 CT-T-T---ATTGTAAAAACAGAAGTGTATATGTTATTTGTTTTCTCTTGTATCAAA-TC 2008
Query 2058 TTTA-GACATGTTATGTGTTGCAAGTGTGT-CTTT-CTATAGTATTGGAAGAGTGAC 2111
|||| |||||||||||| |||||||||||| |||| ||||||| |||||||||||||
Sbjct 2009 TTTAAGACATGTTATGTTTTGCAAGTGTGTTCTTTTCTATAGTCTTGGAAGAGTGAC 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79608612050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5