BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28455.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484620 jgi|Araly1|484620|fgenesh2_kg.5__612__AT3G28455.1 1149 0.0
> Ahg484620 jgi|Araly1|484620|fgenesh2_kg.5__612__AT3G28455.1
Length=807
Score = 1149 bits (622), Expect = 0.0
Identities = 759/820 (93%), Gaps = 30/820 (4%)
Strand=Plus/Plus
Query 1 AGGGCCAATCACGGATTTGTCTTCCAAGGTATATAAAAACAACCTAAATGCTTGTTTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGGCCAATCACGGATTTGTCTTCCAAGGTATATAAAAACAACCTAAATGCTTGTTTTTT 60
Query 61 GCTTCCCATTTCGCTTTCCCCTTTTTTGAGCCTCTTCTGTCCAAAGATATCTCTCTCTAT 120
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GCTTCCCATTTCGCTTTCCACTTTTTTGAGCCTCTTCTGTCCAAAGATCTCTCTCTCTAT 120
Query 121 TTATGTGACAGTCACTTCACCAACATCATGGATGTTCTGCTCAGTTTATTCTTGGGTTTG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTATGTGACAGTCACTTCACAAACATCATGGATGTTCTGCTCAGTTTATTCTTGGGTTTG 180
Query 181 GTTGGTCAGTTGTTTATGTTAAACAGGAAGCTGTAGGGACATAGGTTTCAGTATGGGTGG 240
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 181 GTTGGTCAGTTGTTTATGTTAAACAGGAAGCTGTAGGGACATCGGTTGCAGTATGGGTGG 240
Query 241 AAATGGCATTAGAGCTTTGGTTGGAG-TGATTGCATCTTTGGGTTTGATTGTGTTTCTTC 299
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 241 TAATGGCATTAGAGCTTTGGTTGGAGGTG-TTGTTTCTTTGGGTTTGATTGTGTTTCTTC 299
Query 300 TTGTCGGTATCTTAGCAAACTCTGCACCAAGTGTTCCATCATCAGAAAATGTCAAGACTT 359
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 300 TTGTCGGTATCTTAGCAAACTCTGCACCAAGTGTTCCATCAACAGAACATGTCAAGACTT 359
Query 360 TGCGGTTTAGTGGTAAGGATGTGAATCTGTTTCATGTAAGCAAGCGAAAAGTTCCTAATG 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 TGCGGTTTAGTGGTAAGGATGTGAATCTGTTTCATGTGAGCAAGCGAAAAGTTCCAAATG 419
Query 420 GACCTGATCCTATCCACAACAGGAAAGCAGAAACTTCGAGACGGCCACCAAGAGTATGAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GACCTGATCCTATCCACAACAGGAAAGCAGAAACTTCGAGACGGCCACCAAGAGTATGAT 479
Query 480 ATTGACTGTAATGTTT-ATGTCATGCGGGCTTCGTTCATTTTCGGGT-TTTTC-TACCGT 536
|| |||||||||||| || ||||||||||||||||||||||||| | ||||| ||||||
Sbjct 480 ATA-ACTGTAATGTTTTATCTCATGCGGGCTTCGTTCATTTTCGGTTATTTTCCTACCGT 538
Query 537 CTCAAGACACAGTGAAGTATTCAACCTCTCAATTAC-GTTTCCACGTCAAGAAGCTACTA 595
|| |||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||
Sbjct 539 TTCGAGACACAGTGAAGTATGCGACCTCTCAATTACAGTT-CCACGTCAAGAAGCTACTA 597
Query 596 TTTTTTCTGAGGCAATC-ATTAACTTCAGATGTTAGAGATATGCTATGAACTCATAGCTT 654
||||||||| ||||||| || |||||||||| | ||||||||||||||||||||||||||
Sbjct 598 TTTTTTCTGGGGCAATCCAT-AACTTCAGAT-TCAGAGATATGCTATGAACTCATAGCTT 655
Query 655 TGTGAA-G-TCT-TGCT--CT--GTAGAATTTTGGAAGGTGAAGTCTCTGCTCTCTCTT- 706
|||||| | ||| | || || |||| ||||||||||||||||||| |||||||||||
Sbjct 656 TGTGAAAGGTCTCTTCTTACTCTGTAGCATTTTGGAAGGTGAAGTCTTTGCTCTCTCTTA 715
Query 707 TCGTTTTGGAACA-TTGTGTCTAAAGATTGAAAATCATTCAGAAGATTGTTGCTAAGA-T 764
| |||||||||| |||||||||||||||||||| |||||||||||| || |||| |
Sbjct 716 TA-TTTTGGAACACTTGTGTCTAAAGATTGAAAA-CATTCAGAAGATA-TTA--AAGACT 770
Query 765 ATTAAAGACTTCT-TAAGAGTTTTTGTAATAACATTTGTA 803
|||| | ||| | || | ||||| |||||||||||||||
Sbjct 771 CTTAAGGGCTT-TGTAGG-GTTTT-GTAATAACATTTGTA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5