BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28460.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936621 jgi|Araly1|936621|scaffold_500812.1 1476 0.0
> Ahg936621 jgi|Araly1|936621|scaffold_500812.1
Length=979
Score = 1476 bits (799), Expect = 0.0
Identities = 923/981 (94%), Gaps = 16/981 (2%)
Strand=Plus/Plus
Query 79 AGTCGAAAACTTTATCAGCAATGGCGGTTTTGTTGTCATCTTTCTCTCCACTAGGAATCA 138
||||||||||||| | ||| |||||| ||||| | | ||| ||| |||| || | ||
Sbjct 1 AGTCGAAAACTTTTTTAGCTATGGCGATTTTG-T-T-ATC-ATCT-TCCA-TA-GTCTCT 53
Query 139 ACA-T-TGACATGAATAAGAATCTGGGTGTTTCGTATTCTTCTTTCCCTCAAATTCATC- 195
|| | || || ||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 54 CCACTAGGA-ATCAATAAGAATTTGGGTGTCTCGTATTCTTCTTTCCCTCAAATTCA-CA 111
Query 196 TCTTTAAGGG-TTCTACTCCACTGCGTGTTCGAACATTC-GTCGTCTCGAGTCGTAAAAA 253
|| || |||| |||||||||||||||| |||||| | || ||||||||||| ||||||||
Sbjct 112 TC-TTCAGGGTTTCTACTCCACTGCGTATTCGAA-AATCTGTCGTCTCGAGCCGTAAAAA 169
Query 254 TTCAGGAACTGGTTTGGCAAGTGAGGATAAGAAATTGTTGCTGGAACGATATGGTTATGA 313
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 170 TTCAGGAACTGGTTTAGCAAGCGAGGATAAGAAATTGTTGTTGGAACGATATGGTTATGA 229
Query 314 TGCTAATGATGACTTTGGGTCTCAATCTAAGAAGGCGAGAAGGAAAGAAGAGAAAATGAG 373
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 230 TGCTAATGATGACTTTGGGTCTCAAACTAAGAAGGCGAGAAGGAAAGAAGAGAAAATGAG 289
Query 374 TGGAAGGAATAGTCAACAAGTAGAAGAAGTTGTTGTTGTACAGCCAAGAACAACTCATAG 433
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGGAAGGAATAGTCAACAAGTGGAAGAAGTTGTTGTTGTACAGCCAAGAACAACTCATAG 349
Query 434 GTTACTGCAGGTTCTTGCAGGAACGGCGAAACGAAAGAAATTGCTTTCTCTTAAGGGAAT 493
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GTTACTTCAGGTTCTTGCAGGAACGGCGAAACGAAAGAAATTGCTTTCTCTTAAGGGAAT 409
Query 494 GGATGTGAGACCTATGATGGAAGTTGTTAAAGGAGCAGCTTTTGGAATTCTCCAGGCTGC 553
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 410 GGATGTGAGACCTATGATGGAAGTTGTTAAAGGAGCTGCTTTTGGAATTCTCCAGGCTGC 469
Query 554 TGGTGGTTGTCCAACGTCTCTGCGTCCTGGTAGGTGGTTGGATTTGTATAGTGGTACAGG 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TGGTGGTTGTCCAACGTCTCTGCGTCCTGGTAGGTGGTTGGATTTGTATAGTGGTACAGG 529
Query 614 GTCTGTTGGGATTGAAGCAATCAGTCGAGGATGTTCTGAGGCACATTTTGTTGAGATGGA 673
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 530 GTCTGTTGGAATTGAAGCAATAAGTCGAGGATGTTCGGAGGCACATTTTGTTGAGATGGA 589
Query 674 TCCTTGGGTTGTTTCAAATGTTCTACAACCAAACTTGGAACACACTGGGTTTGTTGATGC 733
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TCCTTGGGTTGTGACAAATGTTCTACAACCAAACTTGGAACACACTGGGTTTGTTGATGC 649
Query 734 TTCGGTTATACACACTGCTCGAGTTGAAAACTTCCTGGAACGTGCTGATAAATTAGTAGG 793
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 650 TTCGGTTATCCACACTGCTCGAGTTGAAAACTTCTTGGAACGTGCTGATAAATTAGTAGG 709
Query 794 TAAGGATGGAGTGTTTGATTATATCAGCGTTACGCCACCTTACATGGAGGTTGATTATGA 853
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 710 TAAGGATGGAGCGTTTGATTATATCAGCGTTACCCCACCTTACATGGAGGTTGACTATGA 769
Query 854 GGTTCTGATGGATCAGATTGCTAAGTCACCAGCGATTGGGGAAAATACTTTTATTTTGGT 913
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||
Sbjct 770 GGTTCTGATGGATCAGATTGCTAAGTCGCCAGCAATTGGGGAAAATACATTTATTGTGGT 829
Query 914 CGAGTACCCATCACGAACAACAATGCTTGATTCATGTGGATGCCTTGAAAAGATGACTGA 973
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CGAGTACCCTTCACGAACAACAATGCTTGATTCATGTGGATGCCTTGAAAAGATGACTGA 889
Query 974 TAGAAGGTTTGGCCGGACACATCTAGCTATATATGGACCAAAATGGGCTCAGAAGCCAAG 1033
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 890 TCGAAGGTTTGGCCGGACACATCTGGCCATATATGGACCAAAATGGGCTCAGAAGCCAAG 949
Query 1034 AAAATCTTAAAGCCACAGTGA 1054
|||||||||||||||||||||
Sbjct 950 AAAATCTTAAAGCCACAGTGA 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5