BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28460.1 Length=1503 Score E Sequences producing significant alignments: (Bits) Value Ahg936621 jgi|Araly1|936621|scaffold_500812.1 1476 0.0 > Ahg936621 jgi|Araly1|936621|scaffold_500812.1 Length=979 Score = 1476 bits (799), Expect = 0.0 Identities = 923/981 (94%), Gaps = 16/981 (2%) Strand=Plus/Plus Query 79 AGTCGAAAACTTTATCAGCAATGGCGGTTTTGTTGTCATCTTTCTCTCCACTAGGAATCA 138 ||||||||||||| | ||| |||||| ||||| | | ||| ||| |||| || | || Sbjct 1 AGTCGAAAACTTTTTTAGCTATGGCGATTTTG-T-T-ATC-ATCT-TCCA-TA-GTCTCT 53 Query 139 ACA-T-TGACATGAATAAGAATCTGGGTGTTTCGTATTCTTCTTTCCCTCAAATTCATC- 195 || | || || ||||||||| ||||||| |||||||||||||||||||||||||| | Sbjct 54 CCACTAGGA-ATCAATAAGAATTTGGGTGTCTCGTATTCTTCTTTCCCTCAAATTCA-CA 111 Query 196 TCTTTAAGGG-TTCTACTCCACTGCGTGTTCGAACATTC-GTCGTCTCGAGTCGTAAAAA 253 || || |||| |||||||||||||||| |||||| | || ||||||||||| |||||||| Sbjct 112 TC-TTCAGGGTTTCTACTCCACTGCGTATTCGAA-AATCTGTCGTCTCGAGCCGTAAAAA 169 Query 254 TTCAGGAACTGGTTTGGCAAGTGAGGATAAGAAATTGTTGCTGGAACGATATGGTTATGA 313 ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 170 TTCAGGAACTGGTTTAGCAAGCGAGGATAAGAAATTGTTGTTGGAACGATATGGTTATGA 229 Query 314 TGCTAATGATGACTTTGGGTCTCAATCTAAGAAGGCGAGAAGGAAAGAAGAGAAAATGAG 373 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 230 TGCTAATGATGACTTTGGGTCTCAAACTAAGAAGGCGAGAAGGAAAGAAGAGAAAATGAG 289 Query 374 TGGAAGGAATAGTCAACAAGTAGAAGAAGTTGTTGTTGTACAGCCAAGAACAACTCATAG 433 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 290 TGGAAGGAATAGTCAACAAGTGGAAGAAGTTGTTGTTGTACAGCCAAGAACAACTCATAG 349 Query 434 GTTACTGCAGGTTCTTGCAGGAACGGCGAAACGAAAGAAATTGCTTTCTCTTAAGGGAAT 493 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 GTTACTTCAGGTTCTTGCAGGAACGGCGAAACGAAAGAAATTGCTTTCTCTTAAGGGAAT 409 Query 494 GGATGTGAGACCTATGATGGAAGTTGTTAAAGGAGCAGCTTTTGGAATTCTCCAGGCTGC 553 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 410 GGATGTGAGACCTATGATGGAAGTTGTTAAAGGAGCTGCTTTTGGAATTCTCCAGGCTGC 469 Query 554 TGGTGGTTGTCCAACGTCTCTGCGTCCTGGTAGGTGGTTGGATTTGTATAGTGGTACAGG 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 TGGTGGTTGTCCAACGTCTCTGCGTCCTGGTAGGTGGTTGGATTTGTATAGTGGTACAGG 529 Query 614 GTCTGTTGGGATTGAAGCAATCAGTCGAGGATGTTCTGAGGCACATTTTGTTGAGATGGA 673 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 530 GTCTGTTGGAATTGAAGCAATAAGTCGAGGATGTTCGGAGGCACATTTTGTTGAGATGGA 589 Query 674 TCCTTGGGTTGTTTCAAATGTTCTACAACCAAACTTGGAACACACTGGGTTTGTTGATGC 733 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 TCCTTGGGTTGTGACAAATGTTCTACAACCAAACTTGGAACACACTGGGTTTGTTGATGC 649 Query 734 TTCGGTTATACACACTGCTCGAGTTGAAAACTTCCTGGAACGTGCTGATAAATTAGTAGG 793 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 650 TTCGGTTATCCACACTGCTCGAGTTGAAAACTTCTTGGAACGTGCTGATAAATTAGTAGG 709 Query 794 TAAGGATGGAGTGTTTGATTATATCAGCGTTACGCCACCTTACATGGAGGTTGATTATGA 853 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 710 TAAGGATGGAGCGTTTGATTATATCAGCGTTACCCCACCTTACATGGAGGTTGACTATGA 769 Query 854 GGTTCTGATGGATCAGATTGCTAAGTCACCAGCGATTGGGGAAAATACTTTTATTTTGGT 913 ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| Sbjct 770 GGTTCTGATGGATCAGATTGCTAAGTCGCCAGCAATTGGGGAAAATACATTTATTGTGGT 829 Query 914 CGAGTACCCATCACGAACAACAATGCTTGATTCATGTGGATGCCTTGAAAAGATGACTGA 973 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 CGAGTACCCTTCACGAACAACAATGCTTGATTCATGTGGATGCCTTGAAAAGATGACTGA 889 Query 974 TAGAAGGTTTGGCCGGACACATCTAGCTATATATGGACCAAAATGGGCTCAGAAGCCAAG 1033 | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 890 TCGAAGGTTTGGCCGGACACATCTGGCCATATATGGACCAAAATGGGCTCAGAAGCCAAG 949 Query 1034 AAAATCTTAAAGCCACAGTGA 1054 ||||||||||||||||||||| Sbjct 950 AAAATCTTAAAGCCACAGTGA 970 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56259291865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5