BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28470.1 Length=1025 Score E Sequences producing significant alignments: (Bits) Value Ahg484622 jgi|Araly1|484622|fgenesh2_kg.5__614__AT3G28470.1 1478 0.0 > Ahg484622 jgi|Araly1|484622|fgenesh2_kg.5__614__AT3G28470.1 Length=1031 Score = 1478 bits (800), Expect = 0.0 Identities = 959/1035 (93%), Gaps = 14/1035 (1%) Strand=Plus/Plus Query 1 ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60 |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1 ATGGGAAGGCCTCCTTGTTGTGACAAATCAAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60 Query 61 GAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATC 120 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 GAAGATGCTAAGATCCTCGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGTTTGATC 120 Query 121 CCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTAC 180 |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 121 CCCAAAAAAGCAGGCCTGAATCGATGCGGAAAGAGCTGTAGACTGAGATGGACTAATTAC 180 Query 181 TTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAG 240 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 181 TTAAGACCTGACCTTAAACATGACAGTTTCTCTCCCCAAGAAGAAGAGCTTATCATTGAG 240 Query 241 TGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACG 300 ||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 241 TGTCACAGAATCATTGGCAGCAGGTGGTCTTCGATTGCTCGAAAGCTTCCAGGAAGAACG 300 Query 301 GATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGG 360 ||||| |||||||| || || ||||||||||||||||||||||| ||||||||||||||| Sbjct 301 GATAACGATGTGAAAAACCATTGGAACACAAAGCTGAAGAAGAAACTGATGAAAATGGGG 360 Query 361 ATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGC 420 ||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| Sbjct 361 ATAGATCCGGTGACTCATAAACCAGTTTCTCAAGTCCTTTCAGAATTCAGAAACATTAGT 420 Query 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCC 480 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCAAACAACTCTATACTCACACAATCT 480 Query 481 AACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAAC 540 |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 481 AACTCAGCCTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATT--A-CAAC 537 Query 541 TCTCCAATGATGTTTACAAATT---C--C-TCTGAGTACCAAACTACTCCATTTCATTTC 594 ||| |||||||||||||||||| | | ||||| | |||||||||||||||||||||| Sbjct 538 TCTTCAATGATGTTTACAAATTCCGCTTCGTCTGAATTCCAAACTACTCCATTTCATTTC 597 Query 595 TATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 654 | | ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 598 TCTGGCCATCCAAGTAATCTACTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 657 Query 655 TCTA-CTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTG 713 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 658 TC-AGCTAGTATCACTCAGCCAAACCAAGTGCCTCAAACACCGGTTACTAACTTCTACTG 716 Query 714 GAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGA 773 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 717 GAGCGATTTCCTTCTCTCGGATCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACAAGCGA 776 Query 774 CCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAA 833 ||||||||| |||| ||||| ||||||||||||| | ||||||||||||||||||| || Sbjct 777 CCTCACTTTCGCGCAAAACGAGCATCATTTCAACAACCAAGCCGAATACATCTCTCAGAA 836 Query 834 CATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACT 893 |||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| | Sbjct 837 CATCGATTCAAACGCCTCGGTAACATGTCATTCCGCGAGTTCATTCGTGGACGAAATATT 896 Query 894 AGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTA 953 |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| Sbjct 897 GGATAAAGACCAAGAGATGCTATCACAATTTCCTCAACTCTTGAATGATTTCGATTATTA 956 Query 954 GATCCCTTCTTTTCCCTATTGTTGTT---ACTTCTCTTGTAACTGGTTTATGATTTTCAA 1010 |||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||| Sbjct 957 GATCTCTTCTTTTCATTATTGTTGTTGTTACTTATCTTGTAACTGATTTATGATTTTCAA 1016 Query 1011 GAACTATGTTTTTTC 1025 |||||||| |||||| Sbjct 1017 GAACTATGATTTTTC 1031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38122917000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5