BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28470.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484622 jgi|Araly1|484622|fgenesh2_kg.5__614__AT3G28470.1 1478 0.0
> Ahg484622 jgi|Araly1|484622|fgenesh2_kg.5__614__AT3G28470.1
Length=1031
Score = 1478 bits (800), Expect = 0.0
Identities = 959/1035 (93%), Gaps = 14/1035 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGACCTCCTTGTTGTGACAAGTCCAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGGCCTCCTTGTTGTGACAAATCAAATGTCAAGAAAGGTCTCTGGACCGAGGAA 60
Query 61 GAAGACGCTAAGATCCTTGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGCTTGATC 120
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAAGATGCTAAGATCCTCGCTTATGTTGCTATCCATGGTGTAGGAAACTGGAGTTTGATC 120
Query 121 CCCAAAAAAGCAGGTCTGAATCGATGTGGAAAGAGCTGTAGACTAAGATGGACTAATTAC 180
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 121 CCCAAAAAAGCAGGCCTGAATCGATGCGGAAAGAGCTGTAGACTGAGATGGACTAATTAC 180
Query 181 TTAAGACCTGACCTTAAACATGACAGCTTCTCTACCCAAGAAGAAGAGCTTATCATTGAG 240
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 181 TTAAGACCTGACCTTAAACATGACAGTTTCTCTCCCCAAGAAGAAGAGCTTATCATTGAG 240
Query 241 TGTCATAGAGCCATTGGCAGCAGGTGGTCTTCCATTGCACGAAAGCTTCCAGGAAGAACG 300
||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 TGTCACAGAATCATTGGCAGCAGGTGGTCTTCGATTGCTCGAAAGCTTCCAGGAAGAACG 300
Query 301 GATAATGATGTGAAGAATCACTGGAACACAAAGCTGAAGAAGAAGCTGATGAAAATGGGG 360
||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GATAACGATGTGAAAAACCATTGGAACACAAAGCTGAAGAAGAAACTGATGAAAATGGGG 360
Query 361 ATAGACCCGGTGACTCATAAACCGGTTTCTCAACTCCTTGCAGAATTCAGAAACATTAGC 420
||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 361 ATAGATCCGGTGACTCATAAACCAGTTTCTCAAGTCCTTTCAGAATTCAGAAACATTAGT 420
Query 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCTAACAACTCTATACTCACACAATCC 480
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 GGCCATGGAAATGCATCCTTCAAAACAGAACCATCAAACAACTCTATACTCACACAATCT 480
Query 481 AACTCAGCTTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATTACACCAAC 540
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 481 AACTCAGCCTGGGAAATGATGAGAAACACAACAACAAACCATGAGAGTTATT--A-CAAC 537
Query 541 TCTCCAATGATGTTTACAAATT---C--C-TCTGAGTACCAAACTACTCCATTTCATTTC 594
||| |||||||||||||||||| | | ||||| | ||||||||||||||||||||||
Sbjct 538 TCTTCAATGATGTTTACAAATTCCGCTTCGTCTGAATTCCAAACTACTCCATTTCATTTC 597
Query 595 TATAGCCATCCAAATCATCTGCTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 654
| | ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTGGCCATCCAAGTAATCTACTCAATGGAACCACATCTTCATGCTCTTCCTCATCATCT 657
Query 655 TCTA-CTAGTATCACTCAGCCAAACCAAGTACCTCAAACACCGGTTACTAACTTCTACTG 713
|| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 TC-AGCTAGTATCACTCAGCCAAACCAAGTGCCTCAAACACCGGTTACTAACTTCTACTG 716
Query 714 GAGCGATTTCCTTCTCTCGGACCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACTAGCGA 773
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 717 GAGCGATTTCCTTCTCTCGGATCCGGTTCCTCAAGTAGTGGGATCCTCAGCTACAAGCGA 776
Query 774 CCTCACTTTTACGCAGAACGAACATCATTTCAACATCGAAGCCGAATACATCTCTCAAAA 833
||||||||| |||| ||||| ||||||||||||| | ||||||||||||||||||| ||
Sbjct 777 CCTCACTTTCGCGCAAAACGAGCATCATTTCAACAACCAAGCCGAATACATCTCTCAGAA 836
Query 834 CATCGATTCAAAGGCCTCGGGAACATGTCATTCCGCGAGTTCCTTCGTTGACGAAATACT 893
|||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||| |
Sbjct 837 CATCGATTCAAACGCCTCGGTAACATGTCATTCCGCGAGTTCATTCGTGGACGAAATATT 896
Query 894 AGATAAAGACCAAGAGATGTTGTCACAGTTTCCTCAACTCTTGAATGATTTCGATTATTA 953
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 897 GGATAAAGACCAAGAGATGCTATCACAATTTCCTCAACTCTTGAATGATTTCGATTATTA 956
Query 954 GATCCCTTCTTTTCCCTATTGTTGTT---ACTTCTCTTGTAACTGGTTTATGATTTTCAA 1010
|||| ||||||||| |||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 957 GATCTCTTCTTTTCATTATTGTTGTTGTTACTTATCTTGTAACTGATTTATGATTTTCAA 1016
Query 1011 GAACTATGTTTTTTC 1025
|||||||| ||||||
Sbjct 1017 GAACTATGATTTTTC 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5