BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28480.2
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484624 jgi|Araly1|484624|fgenesh2_kg.5__616__AT3G28480.1 1596 0.0
Ahg896773 jgi|Araly1|896773|Al_scaffold_0005_739 625 3e-178
> Ahg484624 jgi|Araly1|484624|fgenesh2_kg.5__616__AT3G28480.1
Length=1278
Score = 1596 bits (864), Expect = 0.0
Identities = 1137/1258 (90%), Gaps = 62/1258 (5%)
Strand=Plus/Plus
Query 1 GTCTTGGTCTTCTTCGCACCAACAACAAGTCTTTCTCACGAA---------AATGGATTC 51
|||||||||||||| | || |||||||||||||||||||| ||||||||
Sbjct 56 GTCTTGGTCTTCTT--CTTCACCAACAAGTCTTTCTCACGAATTTTTTCCCGATGGATTC 113
Query 52 TCGGATTTTTCTCGCATTTTCCCTCTGTTTTCTCTTCACTCTC-CCTCTAATTTCATCTG 110
||||| |||||||||||||||||||||||||||||||| |||| || ||| |||||||
Sbjct 114 TCGGAATTTTCTCGCATTTTCCCTCTGTTTTCTCTTCATTCTCTCC-AAAATCTCATCTG 172
Query 111 CACCTAACCGCTTCCTCACTAGATCGAGTAACACTAGAGATGGGTCAGTGATAAAGATGA 170
| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct 173 CTCCTAACCGCTTCCTCACTCGATCGAGTAACAATAGAGATGGGTCTGTGATAAAGATGA 232
Query 171 AAACAAGTGCTTCTTCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTC 230
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 233 AAACAAGTGCTTCTTCTTTTGGGTTTGATCCAACTCGTGTTACTCAACTCTCTTGGACTC 292
Query 231 CTAGAGtttttttGTATGAAGGGTTTCTTTCTGATGAGGAATGTGATCATTTTATCAAAT 290
|||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 293 CTAGAGCTTTTTTGTATAAAGGGTTTCTTTCTGATGAGGAATGTGATCACTTTATCAAAT 352
Query 291 TGGCGAAAGGGAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAGAGTGTTG 350
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 353 TGGCGAAAGGAAAGCTTGAGAAGTCAATGGTGGCTGATAATGATTCTGGTGAGAGTGTAG 412
Query 351 AGAGTGAAGATTCTGTTTCT-GTGGTTAGACAAAGTAGCAGCTTCATTGCAAATATGGAT 409
||||||||| | | | | || | || | || || || |||| | | |
Sbjct 413 AGAGTGAAG-TAC-GCA-CAAGTTCTG-GA-AT-GTTT----TT-ATC-CAAA-A-G-A- 456
Query 410 AGTCTAGAGATTGATGATATAGTAAGTAA-TGTGGAGGCAAAACTTGCTGCGTGGACCTT 468
| || ||| ||| || | ||| | || ||| ||||||||||||||||||||||||||
Sbjct 457 ---C-AG-GAT-GAT-AT-T-GTA-GCAAATGTCGAGGCAAAACTTGCTGCGTGGACCTT 506
Query 469 TCTTCCCGAAGAGAATGGTGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTA 528
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 507 TATTCCCGAAGAAAATGGGGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTA 566
Query 529 TGAACCGCATTTTGACTACTTTCACGACCAGGCTAATCTAGAGCTCGGTGGTCATCGGAT 588
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 567 TGAACCGCATTTTGACTACTTTCACGACCAGGCCAATCTAGAGCTCGGTGGTCATCGGAT 626
Query 589 TGCCACAGTATTGATGTACTTGTCCAATGTTGAAAAGGGAGGAGAAACAGTGTTTCCCAT 648
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 627 CGCCACTGTATTGATGTACTTGTCCAATGTTGAAAAGGGCGGAGAAACAGTGTTTCCCAT 686
Query 649 GTGGAAGGGTAAAGCAACTCAGTTGAAAGACGATAGCTGGACCGAATGTGCAAAACAAGG 708
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GTGGAAGGGTAAAACAACTCAGTTGAAAGACGATAGCTGGACCGAATGTGCAAAACAAGG 746
Query 709 CTATGCAGTGAAACCGAGGAAAGGGGATGCATTACTGTTCTTCAATCTTCACCCAAATGC 768
||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 747 CTATGCAGTGAAACCAAGGAAAGGGGACGCATTGTTGTTCTTCAATCTACACCCAAATGC 806
Query 769 AACCACAGATTCAAATAGCTTACATGGAAGCTGTCCAGTGGTTGAGGGAGAGAAATGGTC 828
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 807 AACCACAGATTCAAATAGCTTACATGGAAGCTGTCCGGTGGTTGAGGGAGAGAAATGGTC 866
Query 829 AGCAACCAGATGGATTCACGTTAAGTCATTCGAAAGAGCGTTTAATAAGCAATCTGGATG 888
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 867 AGCAACCAGATGGATTCACGTTAGGTCATTCGACAGAGCGTTTAGTAAGCAATCTGGATG 926
Query 889 TATGGACGAGAATGTGAGCTGCGAAAAATGGGCAAAGGCAGGGGAATGCCAGAAGAATCC 948
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TGTGGACGAGAATGTGAGCTGCGAAAAATGGGCAAAGGCAGGGGAATGCCAGAAGAATCC 986
Query 949 AACATACATGGTTGGTTCAGACAAAGACCATGGATATTGCAGAAAGAGTTGCAAAGCTTG 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 987 AACATACATGGTTGGTTCAGACAAAGACCATGGATATTGCAGAAAGAGTTGCAACGCTTG 1046
Query 1009 CTCATCTTAAGAACAAC-A-A----GTAAAATCAAAGCTCTTATTAAAGGATCAAAATTT 1062
||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 1047 CTCATCTTAAGAACAACGACAACAAGTAAAATCAAAGCTCTTATCAAAGGATCAAAATTT 1106
Query 1063 TTGTATAGCGAAAAACCGGGTTTTCGCCATTCGGGTAGATAAACATATCGTCAATAGAAT 1122
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1107 TTGTATAGCGAAAAACCGGGTTTTCGCCATTCGGGTAGATAAACATTTCGTCAATAGAAT 1166
Query 1123 GAAAAATTTAGAACTATATACTaaaaaaaTAATTCTGATTCTATGTTACTGGTTTCATGT 1182
||| || ||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct 1167 GAATCAT--AGAACAATATACTAAAAAAATAATTCTGATTCTATGTTAC------CA-GT 1217
Query 1183 GCAAGTTATGTTCCTTATGGTTCATAACTAGACCAAAACTTAATAAAAGTCGGTTTAT 1240
| |||||||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 1218 -----T-ATGTTCCTTATGGTTCATAATTAGACCAAAACTTAATGAAAGTCAGTTTAT 1269
> Ahg896773 jgi|Araly1|896773|Al_scaffold_0005_739
Length=870
Score = 625 bits (338), Expect = 3e-178
Identities = 513/595 (86%), Gaps = 22/595 (4%)
Strand=Plus/Plus
Query 422 GATGATATAGTAAG-TAATGTGGAGGCAAAACTTGCTGCGTGGACCTTTCTTCCCGAAGA 480
||||||||||| || |||||| ||||| ||||||||| | ||||||||||||||||| ||
Sbjct 286 GATGATATAGT-AGCTAATGTCGAGGCTAAACTTGCTACATGGACCTTTCTTCCCGAGGA 344
Query 481 GAATGGTGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTATGAACCGCATTT 540
||||| ||| || | ||||||||||| ||||||||||||||||| ||||| || |||||
Sbjct 345 AAATGGGGAAGCCTTACAAATATTGCACTATGAGAATGGTCAAAAATATGATCCACATTT 404
Query 541 TGACTACT-TTCACGACCAGGCTAA-TCTAGAGCTCGGTGGTCATCGGATTGCCACAGTA 598
||||||| || ||||| ||| || |||| ||||||||||||||||||| ||||| |||
Sbjct 405 CGACTACTATT-ACGACAAGG-AAACTCTAAAGCTCGGTGGTCATCGGATCGCCACCGTA 462
Query 599 TTGATGTACTTGTCCAATGTTGA-AAAGGGAGGAGAAACAGTGTTTCCCATGTGGAAGGG 657
| |||||||||||||||| | | |||||| ||||||||||||||||| |||||||||||
Sbjct 463 CTAATGTACTTGTCCAATG-TCACAAAGGGTGGAGAAACAGTGTTTCCTATGTGGAAGGG 521
Query 658 TAAAGCAACTCAGTTGAAAGACGATAGC-TGGACCGAATGTGCAAAACAAGGCTATGCAG 716
|||| || ||||| |||||||||||| | ||| | |||||||| ||||||||||||||||
Sbjct 522 TAAAACACCTCAGCTGAAAGACGATA-CTTGGTCGGAATGTGCGAAACAAGGCTATGCAG 580
Query 717 TGAAACCGAGGAAAGGGGATGCATTACTGTTCTTCAATCTTCACCCAAATGCAACCACAG 776
||||||||||||||||||| || || ||||||| |||||||| ||||||||||||||||
Sbjct 581 TGAAACCGAGGAAAGGGGACGCTTTGTTGTTCTTTAATCTTCATCCAAATGCAACCACAG 640
Query 777 ATTCAAATAGCTTACATGGAAGCTGTCCAGTGGTTGAGGGAGAGAAATGGTCAGCAACCA 836
|| ||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 641 ATCCAACTAGCTTACATGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACCA 700
Query 837 GATGGATTCACGTTAAGTCATTCGA-AAGA-GCGTTTAATAAGCAATCTGGATGTATGGA 894
||||||||||||||| |||||| | |||| || ||| || | | || ||| ||||
Sbjct 701 GATGGATTCACGTTAGGTCATTTGGTAAGAAGC----AATCAG-A-TG-GG-TGTGTGGA 752
Query 895 CGAGAATGTGAGCTGCGAAAAATGGGCAAAGGCAGGGGAATGCCAGAAGAATCCAACATA 954
||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 753 CGATCATGAGAGCTGCGAAATATGGGCAAAGGCAGGGGAATGCGAGAAGAATCCAATGTA 812
Query 955 CATGGTTGGTTCAGACAAA-GACCATGGATATTGCAGAAAGAGTTGCAAAGCTTG 1008
|||| | |||||||| || |||| ||||||||| ||||||||||||||||||||
Sbjct 813 CATGATGGGTTCAGA-AACTGACCTTGGATATTGTAGAAAGAGTTGCAAAGCTTG 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5