BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28490.1
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896773 jgi|Araly1|896773|Al_scaffold_0005_739 1227 0.0
Ahg484624 jgi|Araly1|484624|fgenesh2_kg.5__616__AT3G28480.1 832 0.0
> Ahg896773 jgi|Araly1|896773|Al_scaffold_0005_739
Length=870
Score = 1227 bits (664), Expect = 0.0
Identities = 807/875 (92%), Gaps = 13/875 (1%)
Strand=Plus/Plus
Query 1 ATGGattctcaatattttcttgcattttccctt-tctcttctcttgattttctctcaaat 59
|||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCTCAAAATTTTCTTGCATTTT-CCTTCTCTCTTCTCTTGATTTTCTCTCAAAT 59
Query 60 ttcatctttctcctttAGTGTTGATCCAACTAGAATCACTCAACTCTCTTGGACTCCTAG 119
|||||||| |||||||| | |||||||||||||| ||||||||||||| |||||||| ||
Sbjct 60 TTCATCTTCCTCCTTTACTTTTGATCCAACTAGAGTCACTCAACTCTCCTGGACTCCAAG 119
Query 120 GGCATTTTTATACAAAGGATTTCTCTCAGATGAGGAATGTGATCATTTGATTAAGTTGGC 179
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 120 GGCATTTTTATACAATGGGTTTCTCTCTGATGAGGAATGTGATCATTTGATTAACTTGGC 179
Query 180 AAAAGGAAAGCTTGAGAAGTCAATGGTGGTGGCTGATGTTGATTCAGGTGAGAGTGA-AG 238
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||
Sbjct 180 AAAAGGAAAGCTTGAGAAGTCAATGGTGGTGGCTGATGATAATTCAGGTGAGAGT-ATAG 238
Query 239 ACAGTGAAGTACGCACAAGTTCTGGAATGTTTCTGACCAAAAGACAGGATGATATAGTAG 298
| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 ATAGTGAAGAACGCACAAGTTCTGGAGTGTTTCTGACCAAAAGACAGGATGATATAGTAG 298
Query 299 CTAATGTCGAGGCTAAACTTGCTGCATGGACCTTTCTTCCTGAGGAAAATGGGGAAGCCT 358
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 299 CTAATGTCGAGGCTAAACTTGCTACATGGACCTTTCTTCCCGAGGAAAATGGGGAAGCCT 358
Query 359 TACAAATACTGCACTATGAGAATGGTCAAAAATATGATCCGCATTTCGACTATTTTTACG 418
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 359 TACAAATATTGCACTATGAGAATGGTCAAAAATATGATCCACATTTCGACTACTATTACG 418
Query 419 ACAA-GAAAGCTCTAGAGCTAGGTGGTCATCGGATCGCCACCGTACTAATGTACTTGTCC 477
|||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACAAGGAAA-CTCTAAAGCTCGGTGGTCATCGGATCGCCACCGTACTAATGTACTTGTCC 477
Query 478 AATGTCACAAAGGGTGGAGAAACAGTGTTTCCCAACTGGAAGGGTAAAACACCTCAGCTG 537
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 478 AATGTCACAAAGGGTGGAGAAACAGTGTTTCCTATGTGGAAGGGTAAAACACCTCAGCTG 537
Query 538 AAAGACGATAGCT-GGTCGAAATGTGCAAAACAAGGCTATGCAGTGAAACCGAGGAAAGG 596
|||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 AAAGACGATA-CTTGGTCGGAATGTGCGAAACAAGGCTATGCAGTGAAACCGAGGAAAGG 596
Query 597 TGACGCATTATTGTTCTTCAATCTTCATCTAAATGGAACAACGGACCCAAATAGCTTACA 656
||||| || |||||||| |||||||||| ||||| ||| || || |||| |||||||||
Sbjct 597 GGACGCTTTGTTGTTCTTTAATCTTCATCCAAATGCAACCACAGATCCAACTAGCTTACA 656
Query 657 TGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACTAGATGGATTCATGTTAG 716
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 657 TGGAAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACCAGATGGATTCACGTTAG 716
Query 717 GTCATTCGGTAAGAAGAAA-CT--TGTGTGTGTGGACGATCATGAGAGCTGCCAAGA-AT 772
|||||| ||||||||| || | || ||||||||||||||||||||||||| || | ||
Sbjct 717 GTCATTTGGTAAGAAGCAATCAGATGGGTGTGTGGACGATCATGAGAGCTGCGAA-ATAT 775
Query 773 GGGCAGATGCAGGGGAATGCGAGAAGAATCCAATGTACATGGTGGGTTCGGAAACTTCCC 832
||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| ||
Sbjct 776 GGGCAAAGGCAGGGGAATGCGAGAAGAATCCAATGTACATGATGGGTTCAGAAACTGACC 835
Query 833 TTGGATTTTGTAGAAAGAGCTGCAAAGCTTGTTGA 867
|||||| |||||||||||| |||||||||||||||
Sbjct 836 TTGGATATTGTAGAAAGAGTTGCAAAGCTTGTTGA 870
> Ahg484624 jgi|Araly1|484624|fgenesh2_kg.5__616__AT3G28480.1
Length=1278
Score = 832 bits (450), Expect = 0.0
Identities = 713/837 (85%), Gaps = 29/837 (3%)
Strand=Plus/Plus
Query 67 ttctcctttAGTG-TTGATCCAACTAGAATCACTCAACTCTCTTGGACTCCTAGGGCATT 125
|||| |||| | | ||||||||||| | | ||||||||||||||||||||||| || ||
Sbjct 243 TTCTTCTTTTGGGTTTGATCCAACTCGTGTTACTCAACTCTCTTGGACTCCTAGAGCTTT 302
Query 126 TTTATACAAAGGATTTCTCTCAGATGAGGAATGTGATCA-TTTGATTAAGTTGGCAAAAG 184
||| || ||||| ||||| || ||||||||||||||||| ||| || || ||||| ||||
Sbjct 303 TTTGTATAAAGGGTTTCTTTCTGATGAGGAATGTGATCACTTT-ATCAAATTGGCGAAAG 361
Query 185 GAAAGCTTGAGAAGTCAATGGTGGTGGCTGATGTTGATTCAGGTGAGAGTGAAGACAGTG 244
|||||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||||
Sbjct 362 GAAAGCTTGAGAAGTCAA---TGGTGGCTGATAATGATTCTGGTGAGAGTGTAGAGAGTG 418
Query 245 AAGTACGCACAAGTTCTGGAATGTTTCTGA-CCAAAAGACAGGATGATATAGTAGCTAAT 303
|||||||||||||||||||||||||| | | ||||||||||||||||||| ||||| |||
Sbjct 419 AAGTACGCACAAGTTCTGGAATGTTTTT-ATCCAAAAGACAGGATGATATTGTAGCAAAT 477
Query 304 GTCGAGGCTAAACTTGCTGCATGGACCTTTCTTCCTGAGGAAAATGGGGAAGCCTTACAA 363
|||||||| ||||||||||| ||||||||| |||| || |||||||||||| || | |||
Sbjct 478 GTCGAGGCAAAACTTGCTGCGTGGACCTTTATTCCCGAAGAAAATGGGGAATCCATGCAA 537
Query 364 ATACTGCACTATGAGAATGGTCAAAAATATGATCCGCATTTCGACTATTTTTACGACAAG 423
||| |||| ||||||||||||||||| ||||| |||||||| ||||| ||| ||||| ||
Sbjct 538 ATATTGCATTATGAGAATGGTCAAAAGTATGAACCGCATTTTGACTACTTTCACGACCAG 597
Query 424 A--AAGCTCTAGAGCTAGGTGGTCATCGGATCGCCACCGTACTAATGTACTTGTCCAATG 481
|| ||||||||| |||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 598 GCCAA--TCTAGAGCTCGGTGGTCATCGGATCGCCACTGTATTGATGTACTTGTCCAATG 655
Query 482 TC-ACAAAGGGTGGAGAAACAGTGTTTCCCAACTGGAAGGGTAAAACACCTCAGCTGAAA 540
| | |||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 656 TTGA-AAAGGGCGGAGAAACAGTGTTTCCCATGTGGAAGGGTAAAACAACTCAGTTGAAA 714
Query 541 GACGATAGCTGGTC-GAAATGTGCAAAACAAGGCTATGCAGTGAAACCGAGGAAAGGTGA 599
|||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 715 GACGATAGCTGGACCGAA-TGTGCAAAACAAGGCTATGCAGTGAAACCAAGGAAAGGGGA 773
Query 600 CGCATTATTGTTCTTCAATCTTCATCTAAATGGAACAACGGACCCAAATAGCTTACATGG 659
|||||| |||||||||||||| || | ||||| ||| || || ||||||||||||||||
Sbjct 774 CGCATTGTTGTTCTTCAATCTACACCCAAATGCAACCACAGATTCAAATAGCTTACATGG 833
Query 660 AAGTTGTCCGGTGATTGAGGGAGAGAAATGGTCAGCAACTAGATGGATTCATGTTAGGTC 719
||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 834 AAGCTGTCCGGTGGTTGAGGGAGAGAAATGGTCAGCAACCAGATGGATTCACGTTAGGTC 893
Query 720 ATTCG---G----TA-AG-AAGAAA-CTTGTGTGTGTGGACGATCATGAGAGCTGCCAAG 769
||||| | | || ||| || || | ||||||||||| ||| ||||||| ||
Sbjct 894 ATTCGACAGAGCGTTTAGTAAGCAATCTGGA-TGTGTGGACGAGAATGTGAGCTGCGAAA 952
Query 770 AATGGGCAGATGCAGGGGAATGCGAGAAGAATCCAATGTACATGGTGGGTTCGGA-AACT 828
|||||||| | |||||||||||| |||||||||||| |||||||| ||||| || ||
Sbjct 953 AATGGGCAAAGGCAGGGGAATGCCAGAAGAATCCAACATACATGGTTGGTTCAGACAAAG 1012
Query 829 TCCCTTGGATTTTGTAGAAAGAGCTGCAAAGCTTGTTGATCTTAAGAACAACAACAA 885
|| | |||| ||| |||||||| ||||| ||||| | |||||||||||||| ||||
Sbjct 1013 ACCAT-GGATATTGCAGAAAGAGTTGCAACGCTTGCTCATCTTAAGAACAACGACAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35949910731
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5