BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28500.1
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497404 jgi|Araly1|497404|fgenesh2_kg.352__1__AT3G28500.1 800 0.0
Ahg484625 jgi|Araly1|484625|fgenesh2_kg.5__617__AT3G28500.1 800 0.0
> Ahg497404 jgi|Araly1|497404|fgenesh2_kg.352__1__AT3G28500.1
Length=547
Score = 800 bits (433), Expect = 0.0
Identities = 513/550 (93%), Gaps = 11/550 (2%)
Strand=Plus/Plus
Query 93 AAAACCCCTAAAACGATGAAGGTGAT-TGCTGCATTTCTCCTCGCGAAACTCGGTGGAAA 151
|||| ||||||||||||||||||||| | |||||||||| ||||| |||||||| |||||
Sbjct 1 AAAA-CCCTAAAACGATGAAGGTGATCT-CTGCATTTCTTCTCGCTAAACTCGGAGGAAA 58
Query 152 CGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGA 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGA 118
Query 212 TGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTAT 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTAT 178
Query 272 TGCTGCTGGGAGAGAAAAGATGTCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTAtggt 331
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 TGCTGCTGGGAGAGAAAAGATGGCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGT 238
Query 332 ggctggaggtgg---tggtggtggtgCTGCTTCGGCGGCTGAGCCGGTTGCTGAATCTAA 388
||| ||||| || ||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 239 GGCCGGAGGAGGCGGTGGTGGTGGTGGTGCTTCGGCGGCTGAGCCGGTGGCTGAGTCTAA 298
Query 389 GAAGAAGGTTGAAGAAGTGAAGGATGAATCTTCTGACGATGCAGGCATGATGGGTCTCTT 448
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 299 GAAGAAGGTTGAAGAAGTTAAAGATGAATCTTCTGATGATGCAGGCATGATGGGTCTCTT 358
Query 449 TGATTGATCATTTGGTTAGAAGTTTCGTTTAAAGGTCAAGACTTTATGTTTCTGATGTTG 508
|||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 359 TGATTGATGATTTGGTTTGAAGTTTCGTTTAAATGTTAAGACTTTATGTTTCTGATGTTG 418
Query 509 GTTTTATTGATGGATCTTTGTTTAATGTTGAGACTTGTGTTTCTGATGTTGGTTTAATGA 568
||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||| |
Sbjct 419 GTTTTGT-GATGGATCTTTGGGTAATGTTGAGACTTGTGTTTCTGATCTTGGTTTAATTA 477
Query 569 TCTTTGGTGGTGATGA--CTCTATG-TTGGGTT-TTACTTGTGATTTGAGAATTGTGGAT 624
||||||||||| |||| ||||||| || || ||||||||||||||||||||||||||
Sbjct 478 TCTTTGGTGGTTATGATTCTCTATGGTTTTTTTGTTACTTGTGATTTGAGAATTGTGGAT 537
Query 625 GATGATGATG 634
||||||||||
Sbjct 538 GATGATGATG 547
> Ahg484625 jgi|Araly1|484625|fgenesh2_kg.5__617__AT3G28500.1
Length=547
Score = 800 bits (433), Expect = 0.0
Identities = 513/550 (93%), Gaps = 11/550 (2%)
Strand=Plus/Plus
Query 93 AAAACCCCTAAAACGATGAAGGTGAT-TGCTGCATTTCTCCTCGCGAAACTCGGTGGAAA 151
|||| ||||||||||||||||||||| | |||||||||| ||||| |||||||| |||||
Sbjct 1 AAAA-CCCTAAAACGATGAAGGTGATCT-CTGCATTTCTTCTCGCTAAACTCGGAGGAAA 58
Query 152 CGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGA 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGA 118
Query 212 TGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTAT 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTAT 178
Query 272 TGCTGCTGGGAGAGAAAAGATGTCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTAtggt 331
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 179 TGCTGCTGGGAGAGAAAAGATGGCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGT 238
Query 332 ggctggaggtgg---tggtggtggtgCTGCTTCGGCGGCTGAGCCGGTTGCTGAATCTAA 388
||| ||||| || ||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 239 GGCCGGAGGAGGCGGTGGTGGTGGTGGTGCTTCGGCGGCTGAGCCGGTGGCTGAGTCTAA 298
Query 389 GAAGAAGGTTGAAGAAGTGAAGGATGAATCTTCTGACGATGCAGGCATGATGGGTCTCTT 448
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 299 GAAGAAGGTTGAAGAAGTTAAAGATGAATCTTCTGATGATGCAGGCATGATGGGTCTCTT 358
Query 449 TGATTGATCATTTGGTTAGAAGTTTCGTTTAAAGGTCAAGACTTTATGTTTCTGATGTTG 508
|||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 359 TGATTGATGATTTGGTTTGAAGTTTCGTTTAAATGTTAAGACTTTATGTTTCTGATGTTG 418
Query 509 GTTTTATTGATGGATCTTTGTTTAATGTTGAGACTTGTGTTTCTGATGTTGGTTTAATGA 568
||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||| |
Sbjct 419 GTTTTGT-GATGGATCTTTGGGTAATGTTGAGACTTGTGTTTCTGATCTTGGTTTAATTA 477
Query 569 TCTTTGGTGGTGATGA--CTCTATG-TTGGGTT-TTACTTGTGATTTGAGAATTGTGGAT 624
||||||||||| |||| ||||||| || || ||||||||||||||||||||||||||
Sbjct 478 TCTTTGGTGGTTATGATTCTCTATGGTTTTTTTGTTACTTGTGATTTGAGAATTGTGGAT 537
Query 625 GATGATGATG 634
||||||||||
Sbjct 538 GATGATGATG 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23254979370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5