BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28600.1

Length=1559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936643 jgi|Araly1|936643|scaffold_500834.1                        468    6e-131


> Ahg936643 jgi|Araly1|936643|scaffold_500834.1
Length=356

 Score =  468 bits (253),  Expect = 6e-131
 Identities = 311/339 (92%), Gaps = 4/339 (1%)
 Strand=Plus/Plus

Query  1100  CTTTGATCAGGAGAGGGAGAATGGACATGCATATTGAGTTGTCATACTGTTCTTTCGAGG  1159
             ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  1     CTTTGATCAGGAGAGGGAGAATGGACATGCATATTGAGTTGTCTTACTGTACTTTCGAGG  60

Query  1160  CGTTTAAGATTCTCGCCAAGAACTATCTTGATCTTGATACTCATCCTCTATTCAAGAAGA  1219
             |||| |||||||| || ||||||||||| ||||||||| ||||||| || ||||||||||
Sbjct  61    CGTTCAAGATTCTAGCAAAGAACTATCTGGATCTTGATTCTCATCCCCTGTTCAAGAAGA  120

Query  1220  TCGAATCATT-ATTGAAGGAAACGAAGATCGCACCAGCTGATGTTGCTGAGAACTTGATG  1278
             | || || || | |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121   TTGAGTCTTTGA-TGAAGGAAACAAAGATCGCACCAGCTGATGTTGCTGAGAACTTGATG  179

Query  1279  AAGAAGAATAC-TGAAATAGATGCTGATGGATCTCTTAAAGATCTAATTCAAGCTCTGGA  1337
             ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180   AAGAAGAAT-CTTGAAATAGATGCTGATGGATCTCTTAAAGATCTAATTCAAGCTCTGGA  238

Query  1338  GGGGAAGAAGAAGATTCATGGAGCTCAAGTAGATGAACCGAAGGACAAATATACCAAGAA  1397
             |  ||||||||||| ||| ||||||||| |||||||||| |||||||||| || ||| ||
Sbjct  239   GATGAAGAAGAAGAGTCAGGGAGCTCAACTAGATGAACCAAAGGACAAATTTATCAATAA  298

Query  1398  GTTTTATAAAGCATTTTGCATGTCATCTAAAGCCTGATT  1436
             |||||||||||||||| |||||||||||||||| |||||
Sbjct  299   GTTTTATAAAGCATTTCGCATGTCATCTAAAGCATGATT  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58392345585


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5