BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28620.1
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948871 jgi|Araly1|948871|scaffold_800758.1 717 0.0
Ahg932498 jgi|Araly1|932498|scaffold_400486.1 701 0.0
> Ahg948871 jgi|Araly1|948871|scaffold_800758.1
Length=652
Score = 717 bits (388), Expect = 0.0
Identities = 558/635 (88%), Gaps = 31/635 (5%)
Strand=Plus/Plus
Query 1 ATGGAAACAGAATCTTTCAAACTCGATGTTCATGTACAA-GCTTTGTCTCAAGATCAGTC 59
|||||||| ||| | |||||||||||||||||||| || ||||| ||||||| || |||
Sbjct 21 ATGGAAACTGAAGCAATCAAACTCGATGTTCATGTA-AAGGCTTTCTCTCAAGCTCGGTC 79
Query 60 GTTAGGGTTCGTAAGTACGGTACTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTCA 118
|||||||||| | ||||||||| ||||||||| | | ||||||||| ||||||||| |||
Sbjct 80 GTTAGGGTTCTTCAGTACGGTAGTAATCAGTCTAGT-CAGAGAAGTCGAGGAATTTATCA 138
Query 119 TCAACGAGAAGGATGATACTGTCACAAGTCTCGGATCTTACCCGGAGGATTCTTCTACTA 178
| ||||| |||||||||| |||||| |||||| |||||||||| |||||||| | ||
Sbjct 139 TTAACGACAAGGATGATAGTGTCACGAGTCTCAGATCTTACCC---GGATTCTTAT-CT- 193
Query 179 GTCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACGACGTCTATCAAC 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 194 -CCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAAC 252
Query 239 GTCTCCAGACCCATCTCCACGATCATGACTTGTCCGAACAATTATCTTACAAGATTGTCC 298
|||||| ||||| ||||||||||||| | ||||||||||| ||||||| |||||||||
Sbjct 253 TTCTCCATACCCAACTCCACGATCATGTCATGTCCGAACAAATATCTTATAAGATTGTCG 312
Query 299 AAGCCCAACAACGGCAAAAAAGACAAAGTTTTTACTTGCCACAACAACGACCTTTATTCA 358
|||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||
Sbjct 313 AAGCCCAACAACGGCAAAGAAGTCAAAGTTTTTACTTTCCACAACAACAACCTTTATTCA 372
Query 359 TGATCGTCTCTGTCAAATTGACACACAAGGTTTACAACGTTGTGTCTTGTGATTCTGCTC 418
|||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 373 TGATAGTCTCTGTCAAATTGACACACAAAGTATACAACGTTGTGTCTTGTAATTCTGCT- 431
Query 419 CGTTGGCAACAGATTTCGACCAAGAGAGCCAACAAGAAGAAGAAGAGGAATCGAAGACTT 478
|||| | | | | | ||||||||| ||||||||||||| | || |||||||
Sbjct 432 --TTGG-A-C------C-A--A-GAGAGCCAAGAAGAAGAAGAAGA--A-TCCAAGACTT 474
Query 479 GTGCCATCTGTTTGGAGAATTTGTTGAGATCGGAGGATTACTGCGAGATGCCTACTTGTT 538
|||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 475 GTGCTATCTGTTTGGAGAATTTGTCGAGATCCGAGGATTACTGCGAGATGCCTACTTGTT 534
Query 539 CCCATTA-TTTTCATGAACCATGTCTCACTGAGTGGTTGACTCGAGATAATAACTCATGC 597
| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 535 CGCAT-AGTTTTCATGAACCATGTCTCACTCAGTGGTTGACTCGAGATAATAACTCGTGC 593
Query 598 CCTCTCTGTCGCAAACCTGTTGACAAACTACACAG 632
|||||||||||||||||||||||||||| || |||
Sbjct 594 CCTCTCTGTCGCAAACCTGTTGACAAACAAC-CAG 627
> Ahg932498 jgi|Araly1|932498|scaffold_400486.1
Length=656
Score = 701 bits (379), Expect = 0.0
Identities = 550/629 (87%), Gaps = 25/629 (4%)
Strand=Plus/Plus
Query 1 ATGGAAACAGAATCTTTCAAACTCGATGTTCATG-TACAAGCTTTGTCTCAAGAT-CAGT 58
||||| || ||||||||||||||||| ||||||| || | |||| |||||||| | || |
Sbjct 22 ATGGATACTGAATCTTTCAAACTCGACGTTCATGTTA-AGGCTTGGTCTCAAGCTCCA-T 79
Query 59 CGTTAGGGTTCGTAAGTACGGTACTAATCAGTC-AATACAGAGAAGTAGAGGAATTTCTC 117
||| ||||||| |||| |||||| ||||||||| || |||||||| | ||||||||||||
Sbjct 80 CGTCAGGGTTCTTAAGCACGGTAGTAATCAGTCTAA-ACAGAGAATTCGAGGAATTTCTC 138
Query 118 ATCAACGAGAAGGATGATACTGTCACAAGTCTCGGATCTTACCCGGAGGATTCTTCTACT 177
|| |||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 139 ATTAACGAGAACGATGATAGTGTCATGAGTCTCGGATCTTACCC---TGATTCTTCT-CT 194
Query 178 AGTCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACGACGTCTATCAA 237
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 195 --TCACGACCCACTAATCTCTCTGAAACTCCCAAGTTTCAAACCAAACTACGTCTATCAA 252
Query 238 CGTCTCCAGACCCATCTCCACGATCATGACTTGTCCGAACAATTATCTTACAAGATTGTC 297
| |||||| ||||| ||||||||||||| ||||||||||||| || |||| ||| |||||
Sbjct 253 CTTCTCCAAACCCAACTCCACGATCATGTCTTGTCCGAACAAATAGCTTATAAGGTTGTC 312
Query 298 CAAGCCCAACAACGGCAAAAAAGACAAAGTTTTTACTTGCCACAACAACGACCTTTATTC 357
||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 313 GAAGCCCAAC---GGCAAAGAAGTCAAAGTTTTTACTTGCCACAACAACAACCTTTATTC 369
Query 358 ATGATCGTCTCTGTCAAATTGACACACAAGGTTTACAACGTTGTGTCTTGT-GATTCTGC 416
||||| |||||||||||||||||||| ||||| |||||||||||| ||||| | ||||||
Sbjct 370 ATGATAGTCTCTGTCAAATTGACACAGAAGGTATACAACGTTGTGCCTTGTAG-TTCTGC 428
Query 417 TCCGTTGGCAACAGATTTCGACCAAGAGAGCCAACAAGAAGAAGAAGAGGAATCGAAGAC 476
| |||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||
Sbjct 429 TTCGTTGGCAACAGATTTGGACCAAGAGAGCCAA---GAAGAAGAAGA--A-TCGAAGAC 482
Query 477 TTGTGCCATCTGTTTGGAGAATTTGTTGAGATCGGAGGATTACTGCGAGATGCCT-ACTT 535
|||||||||||||||||||||| ||| |||||| |||||||| ||| |||||||| | ||
Sbjct 483 TTGTGCCATCTGTTTGGAGAATCTGTCGAGATCCGAGGATTATTGCCAGATGCCTTA-TT 541
Query 536 GTTCCCATTATTTTCATGAACCATGTCTCACTGAGTGGTTGACTCGAGATAATAACTCAT 595
| || |||| ||||||||||| |||| ||||| ||||| || | || |||||||||| |
Sbjct 542 GCTCTCATTGTTTTCATGAACGATGTGTCACTAAGTGGGTGGTTGGACATAATAACTCGT 601
Query 596 GCCCTCTCTGTCGCAAACCTGTTGACAAA 624
|||||||||||||||||||||||||||||
Sbjct 602 GCCCTCTCTGTCGCAAACCTGTTGACAAA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23293102287
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5