BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28630.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484637 jgi|Araly1|484637|fgenesh2_kg.5__629__AT3G28630.1 1696 0.0
> Ahg484637 jgi|Araly1|484637|fgenesh2_kg.5__629__AT3G28630.1
Length=1342
Score = 1696 bits (918), Expect = 0.0
Identities = 1107/1197 (92%), Gaps = 18/1197 (2%)
Strand=Plus/Plus
Query 25 AATAAGAAAACAAAGAAACCTCTTTTTTCTCTAATCCAAATGAAAGAAACTAAAAAAGGG 84
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AATAAGAAAACAAAGAAACCTCTTTTTTCTCTAATCCAAATCAAAGAAACTAAAAAAGGG 60
Query 85 TTCTAAAGTACCTGAAA-TTGTTTCACATGAATGATCTTCAATCCA-ATCCTTGGAGGTA 142
||| ||||||||||||| ||| ||| ||||||||||||||||| || || ||| | |||
Sbjct 61 TTCCAAAGTACCTGAAATTTG-TTCGCATGAATGATCTTCAAT-CACATTGTTGAATGTA 118
Query 143 AAATCGCAGCTGTGGCCATCAAAAGATCCCTGTTTCAGATTTTTGTAATTTT-ATACAAA 201
||||||| || |||||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct 119 AAATCGCGGCCCTGGCCATCGACAGATCCCTGTTTCAGATTTTTGT-GTTTTGATACAAC 177
Query 202 AGAACAATAATGGAGATTTTCAAAAAGGCTGAAACCGTGCGTTTACGTAGCTACCACGAC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGAACAATAATGGAGATTTTCAAAAAGGCTGAAACCGTGCGTTTACGTAGCTACCACGAC 237
Query 262 AAGTATCTTCTAGCAGAGGAGGATGAAGAATCCGTGAGCCAGGACAGAGACGGGCGGTCT 321
||||| ||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 238 AAGTACCTTTTAGCAGAGGAGGACGAAGATTCCGTGAGCCAGGACAGAGATGGGCGGTCT 297
Query 322 ATGAACGCAAGATGGACGGTGGAGGTTGTAGAAAAGGCGGATGTGATTCGTCTCAAGAGC 381
|||||||||||||||||||||||| |||||||| | | | ||||| ||||| ||||||
Sbjct 298 ATGAACGCAAGATGGACGGTGGAGATTGTAGAAGTGACAAACGTGATCCGTCTTAAGAGC 357
Query 382 TGCTTTGGCAAGTACCTAACCGCTTCAAACATCCCAATGTTCCTTGGGATGACTGGCAAG 441
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 358 TGCTTTGGCAAGTACCTAACCGCTTCAAACATCCCAATGTTCCTTGGCATGACCGGCAAG 417
Query 442 AGGGTGACACAAACGCTGCCACGGA-GGCTAGACTCATCAACTGAATGGGAACCCGTTAG 500
| ||| || |||||||||||||| | ||||||| |||||||||||||||||||| |||||
Sbjct 418 AAGGTAACGCAAACGCTGCCACG-ACGGCTAGATTCATCAACTGAATGGGAACCTGTTAG 476
Query 501 AGAAGGTGTTCAGGTTAGGCTCAAGACAAGGTATGGACAGTATCTCCGAGCTAATGGGGG 560
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGAAGGCGTTCAGGTTAGGCTTAAGACAAGGTATGGACAGTATCTCCGAGCTAATGGGGG 536
Query 561 TTTACCGCCATGGAGGAATTCGATTACCCATGATATACCTCATAGGTCAACCACACAGGA 620
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 TTTACCGCCATGGAGGAACTCGATTACACATGATATACCTCATAGGTCAACCACACAGGA 596
Query 621 TTGGGTTTTATGGGATATTGACATTCTGGAAAGCAGAAAGAAGAAAGCACCCCCAGTGGC 680
||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 597 CTGGGTTTTATGGGATGTTGATATTTTGGAAAGCAGAAAGAAGAAAGCACCCCCAGTGGC 656
Query 681 TGAACCGGCTTATACGCCTCTCCCCCCTCCTCCACCACCACCAGAGCTTCTGCAAGTAAG 740
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||
Sbjct 657 TGAACCGGCTTATACGCCTCTCCCGCCTCCCCCACCACCACCAGAGCTTCTGCAGGAAAG 716
Query 741 AAAAGATGATCATCAAGAGCCCAATTCACCCAAAGGATTCTCTCTCAGGTCCCCAAGGTT 800
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 717 AAAAGATGATCATCAAGAGCCCCATTCACCCAAAGGATTCTCTCTCAGGTCCCCAAGGTT 776
Query 801 TTCCAAATCCGAGTCTGATGACACTGTCAGCTCACCAGTCAAGGCAGATGGCAGACTAAT 860
|||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 777 TTCCAAATTCGAGTCTGATGACAGTGTCAGCTCACCGGTCAAGGCAGATGGCAGGCTAAT 836
Query 861 TTATTATCGGATTGGGGACGAAGATGGGAACGTGGATGAAACAGCAAAGGAAGAGCTTTT 920
||||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 837 TTATTATAGGATTGGGGACGAAGATGGGAATGTAGATGAAACAACAAAGGAAGAGCTTTT 896
Query 921 CTGCTTCAAGGGAATGGGACTAGAAGAGCTGAAAGAGAAGCTTATAGAAGAGACAGGTCT 980
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 897 CTGCTTCAAGGGAATGGGACTAGAAGAGCTCAAAGAGAAGCTCAAAGAAGAGACAGGTCT 956
Query 981 GAGTGATATATCAATCTGTTCCAAAAACCCTTTAAACGGAAAATTATATCCCCTTCGGTT 1040
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 AAGTGACATATCAATCTGTTCCAAAAACCCTTTAAACGGGAAATTATATCCCCTTCGGTT 1016
Query 1041 ACATCTTCCTCCCAACAACACAAAGATGCATGTCGTATTGATCCCTTCGCCTTCAAAAGG 1100
||||| ||||||||||||||||| ||||| || || |||||||| ||||||||||||||
Sbjct 1017 GCATCTCCCTCCCAACAACACAAAAATGCACGTTGTCTTGATCCCCTCGCCTTCAAAAGG 1076
Query 1101 GGATGCTGCAAGCACTTCTTGAAG--T--A--T--GGTTCAAAATTACAGAGACTCTGTT 1152
|||||||||||||||||||||||| | | | |||||||||||||||||||| ||||
Sbjct 1077 GGATGCTGCAAGCACTTCTTGAAGACTTGAAGTATGGTTCAAAATTACAGAGACTGTGTT 1136
Query 1153 TATCCAAGACCACAAACTTATAGTTTCTGT-ATTGTGTAATTTGGTAACACGTTGTA 1208
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1137 -ATCCAAGACCAAAAACTTATAGTTTCTGTTATTGTGTAATTTGGTAATACGTTGTA 1192
Score = 235 bits (127), Expect = 6e-61
Identities = 144/152 (95%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 1257 ATATGTGAAACGCTACCTACGCAACTAAAACCCAATACTAA-CCAAACATTAAAGAAGAT 1315
|||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 1192 ATATGTGAAATGCTACCTAAGCAACTAAAACCCAATACTAAGCCAAACATGCAAGAAGAT 1251
Query 1316 ATTGTGTAGGGATTTCGTAAGACTTCCCATCAAGTTCTTGTCAATAAGCTTCTTTCATTC 1375
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1252 ATTGTGTCGGGATTTCGTAAGACTTCCCATCAAGTTCTTGTCAATAAGCTTCTTTCAT-C 1310
Query 1376 TTAGTGAGATGCTAATGAGAGCAAATTATATG 1407
|||||||||||||||||||||||||| |||||
Sbjct 1311 TTAGTGAGATGCTAATGAGAGCAAATCATATG 1342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5