BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28640.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484639 jgi|Araly1|484639|fgenesh2_kg.5__631__AT3G28660.1 2300 0.0
> Ahg484639 jgi|Araly1|484639|fgenesh2_kg.5__631__AT3G28660.1
Length=1576
Score = 2300 bits (1245), Expect = 0.0
Identities = 1427/1514 (94%), Gaps = 16/1514 (1%)
Strand=Plus/Plus
Query 1 ATGAGCG-TCGTCTCAAGCTTCCATCAATCATGGAAGAGTTTGATTCTCGCAAGCCAACG 59
||||| | || |||||||||||||| |||||||||||||||| || |||||||| |||||
Sbjct 16 ATGAGTGTTC-TCTCAAGCTTCCATAAATCATGGAAGAGTTTAATCCTCGCAAGTCAACG 74
Query 60 TTGCAACACAGTGAAGCAAATCAAATCAACACATTCTCTATTCATCATCCATGGCCTCCA 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTGCAACACAGTGAACCAAATCAAATCAACACATTCTCTATTCATCATCCATGGCCTCCA 134
Query 120 TCGAAACACTTACGCAATTAGCAAACTTCTCACAGCTTTTCTCCATCTTCCCAATTTAAA 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 135 TCGAAACACTTACGCAATTAGCAAACTTCTCACAGCTTTTCTCCTTCTTCCCAATCTAAA 194
Query 180 CAAACACTTTCACTACGCTTCCTCTATATTCGATTCGATTGAGATTCCTAACTCATTCGT 239
|||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||
Sbjct 195 CAAACACTTTCACTACGCTTCCACTATATTCGATTCGATTCAGATTCGTAATTCATTCGT 254
Query 240 TTACGATACTATGATAAGAATCTGCTC-CAGAAGCTCTCAGCCTCACCTGGGTTTACGAT 298
||||||||||||||||||||||||||| | |||| |||| |||||| ||||||||||||
Sbjct 255 TTACGATACTATGATAAGAATCTGCTCAC-GAAGTTCTCTTCCTCACTTGGGTTTACGAT 313
Query 299 ATTTTCTATTAATGGTGAAGGAAGAAGAAGAAGATATAGCTCCTAGTTATCTCACGTTTC 358
|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 314 ATTTTCGATTAATGGTGAAGGAAGAAGA------TATAGCTCCAAGTTATCTCACGTTTT 367
Query 359 ATTTCTTGATTGTTGCGTGTTTAAAAGCTTGTTTCTTCTCTGTGGGTAAGCAAATTCATT 418
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 368 ATTTCTTGATTGTTGCTTGTTTTAAAGCTTGTTTATTCTCTGTGGGTAAGCAAATTCATT 427
Query 419 GTTGGGTGGTTAAAAATGGTGTCTTTTTATCGGATAGTCATGTACAGACTGGAGTTTTGA 478
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 428 GTTGGGTGGTTAAAAATGGTGTCTTTTTATCGGATGGTCATGTACAGACTGGAATTTT-A 486
Query 479 -GGATTTATGTGGAAGATAAA-TTGTTGTTAGATGCACGCAAGGTGTTCGATGAAATTCC 536
|||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct 487 CGGATTTATGTGGAAGATAAAGTT-TTGTTAGATGCCCGCAAAGTGTTCGATGAAATTCC 545
Query 537 ACAACCAGATGTTGTGAAATGGGATGTTTTGATGAATGGGTATGTTAGATGTGGTTTAGG 596
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 546 GCAACCAGATGTTGTGAAATGGGATGTTTTGATGAATGGATATGTTAGATGTGGTTTAGG 605
Query 597 TTCTGAGGGTTTAGAGGTGTTTAGGGAGATGTTGGTTAA-AGGACTAGAGCCTGATGAGT 655
|||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 606 TTCTGAGGGTTTAGAGGTGTTTAGGGAGATGTTGGT-ACGAGGAGTAGAGCCTGATGAGT 664
Query 656 TTTCGGTTACTACGGCATTAACGGCTTGTGCACAAGTTGGGGCTTTAGCTCAGGGGAAGT 715
|||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||
Sbjct 665 TTTCGGTTACTACGGCGTTAACGGCTTTTGCACAAGTTGGGGCTTTAGCTCAAGGGAAGT 724
Query 716 GGATTCATGAGTTTGTTAAAAAGAAGAGTTGGATTGAGTCTGATGTGTTTGTAGGAACGG 775
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 725 GGATTCATGAGTTTGTGAAGAAGAAGAGATGGATTGAGTCTGATGTGTTTGTAGGAACGG 784
Query 776 CTTTGGTTGACATGTATGCTAAGTGTGGTTGCATAGAGACGGCTGTGGAAGTTTTCAAAA 835
| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 785 CATTGGTTGACATGTATGCTAAGTGTGGTTGCATTGAGATGGCTGTGGAAGTTTTCGAAA 844
Query 836 AGTTGACTAGGAGGAATGTCTTCTCATGGGCAGCTTTAATTGGAGGATATGCGGCTTATG 895
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AGTTGAGTAGGAGGAATGTTTTCTCATGGGCAGCTTTAATTGGAGGATATGCGGCTTATG 904
Query 896 GTTATGCAAAGAAAGCTATGACGTGTTTGGAACGGTTGGAACGAGAAGATGGTATTAAGC 955
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 905 GTTATGCAAAGAAAGCTATGACGTGTTTGGACCGGATGGAGCGAGAAGATGGTATTAAGC 964
Query 956 CTGATAGTGTAGTTCTTCTTGGGGTCTTAGCCGCTTGTGCTCATGGAGGATTTCTTGAAG 1015
|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct 965 CTGACAGTGTAGTTCTTCTTGGGGTCTTAGCTGCTTGTGCTCATGGGGGATTTCTTCAAG 1024
Query 1016 AAGGCAGATCAATGTTAGAAAATATGGAAGCTCGATACGAAATTACTCCAAAGCATGAGC 1075
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1025 AAGGCAGAGCAATGTTAGGAAATATGGAAGCTCGATACGGAATTACTCCAAAGCATGAGC 1084
Query 1076 ATTACAGCTGTATAGTAGATTTGATGTGCAGAGCTGGAAGATTAGATGATGCACTTAATC 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1085 ATTACAGCTGTATAGTAGATTTGATGTGCAGAGCTGGAAGATTAGATGATGCACTTGATC 1144
Query 1136 TTATCGAAAAAATGCCAATGAAACCGCTTGCATCTGTTTGGGGTGCTTTACTGAATGGCT 1195
|||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 1145 TTATCGAAAAAATGCCCATGAAACCTCTTGCATCTGTTTGGGGTGCCTTACTAAATGGTT 1204
Query 1196 GTCGAACGCACAAGAATGTTGAACTCGGAGAACTAGCTGTTAAAAACCTTCTTGACTTGG 1255
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1205 GTCGAACGCACAAGAATGTTGAACTCGGAGAACTAGCTGTTAAAAATCTTCTTGACTTGG 1264
Query 1256 AGAAGGGAAATGTGGAGGAAGAGGAAGCAGCTCTTGTTCAACTATCTAATATTTACTTTA 1315
|||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1265 AGAAAGGAAATGCAGAGGAAGAGGAAGCAGCTCTTGTTCAACTATCTAATATATACTTTA 1324
Query 1316 GTGTTCAAAGAAATCCCGAGGCATCTAAAGTTCGTGGGATGATAGAGCAGAGGGGGGTAA 1375
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1325 GTGTTCAACGAAATCCCGAGGCATCTAAAGTTCGTGGAATGATAGAGCAGAGGGGGATAA 1384
Query 1376 GAAAGACACCAGGATGGAGTGTGTTAGAGGTGGATGGGAATGTTACCAAATTTGTTTCGG 1435
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1385 GAAAGACACCAGGATGGAGTGTGTTAGAGGTGGATGGAAAGGTTACCAAATTTGTTTCGG 1444
Query 1436 GAGATGTGTCGCACCCAAATCTTCTACAAATTCACACAGTGATTCATCTCCTATCTGTTG 1495
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1445 GAGATGTGTCTCACCCAAATCTGCTACAAATTCACACAGTGATTCATCTGCTATCTGTTG 1504
Query 1496 ATGCCTTGCAGATT 1509
||||||||||||||
Sbjct 1505 ATGCCTTGCAGATT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5