BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G28640.1 Length=1515 Score E Sequences producing significant alignments: (Bits) Value Ahg484639 jgi|Araly1|484639|fgenesh2_kg.5__631__AT3G28660.1 2300 0.0 > Ahg484639 jgi|Araly1|484639|fgenesh2_kg.5__631__AT3G28660.1 Length=1576 Score = 2300 bits (1245), Expect = 0.0 Identities = 1427/1514 (94%), Gaps = 16/1514 (1%) Strand=Plus/Plus Query 1 ATGAGCG-TCGTCTCAAGCTTCCATCAATCATGGAAGAGTTTGATTCTCGCAAGCCAACG 59 ||||| | || |||||||||||||| |||||||||||||||| || |||||||| ||||| Sbjct 16 ATGAGTGTTC-TCTCAAGCTTCCATAAATCATGGAAGAGTTTAATCCTCGCAAGTCAACG 74 Query 60 TTGCAACACAGTGAAGCAAATCAAATCAACACATTCTCTATTCATCATCCATGGCCTCCA 119 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 75 TTGCAACACAGTGAACCAAATCAAATCAACACATTCTCTATTCATCATCCATGGCCTCCA 134 Query 120 TCGAAACACTTACGCAATTAGCAAACTTCTCACAGCTTTTCTCCATCTTCCCAATTTAAA 179 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 135 TCGAAACACTTACGCAATTAGCAAACTTCTCACAGCTTTTCTCCTTCTTCCCAATCTAAA 194 Query 180 CAAACACTTTCACTACGCTTCCTCTATATTCGATTCGATTGAGATTCCTAACTCATTCGT 239 |||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||| Sbjct 195 CAAACACTTTCACTACGCTTCCACTATATTCGATTCGATTCAGATTCGTAATTCATTCGT 254 Query 240 TTACGATACTATGATAAGAATCTGCTC-CAGAAGCTCTCAGCCTCACCTGGGTTTACGAT 298 ||||||||||||||||||||||||||| | |||| |||| |||||| |||||||||||| Sbjct 255 TTACGATACTATGATAAGAATCTGCTCAC-GAAGTTCTCTTCCTCACTTGGGTTTACGAT 313 Query 299 ATTTTCTATTAATGGTGAAGGAAGAAGAAGAAGATATAGCTCCTAGTTATCTCACGTTTC 358 |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 314 ATTTTCGATTAATGGTGAAGGAAGAAGA------TATAGCTCCAAGTTATCTCACGTTTT 367 Query 359 ATTTCTTGATTGTTGCGTGTTTAAAAGCTTGTTTCTTCTCTGTGGGTAAGCAAATTCATT 418 |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 368 ATTTCTTGATTGTTGCTTGTTTTAAAGCTTGTTTATTCTCTGTGGGTAAGCAAATTCATT 427 Query 419 GTTGGGTGGTTAAAAATGGTGTCTTTTTATCGGATAGTCATGTACAGACTGGAGTTTTGA 478 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | Sbjct 428 GTTGGGTGGTTAAAAATGGTGTCTTTTTATCGGATGGTCATGTACAGACTGGAATTTT-A 486 Query 479 -GGATTTATGTGGAAGATAAA-TTGTTGTTAGATGCACGCAAGGTGTTCGATGAAATTCC 536 |||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| Sbjct 487 CGGATTTATGTGGAAGATAAAGTT-TTGTTAGATGCCCGCAAAGTGTTCGATGAAATTCC 545 Query 537 ACAACCAGATGTTGTGAAATGGGATGTTTTGATGAATGGGTATGTTAGATGTGGTTTAGG 596 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 546 GCAACCAGATGTTGTGAAATGGGATGTTTTGATGAATGGATATGTTAGATGTGGTTTAGG 605 Query 597 TTCTGAGGGTTTAGAGGTGTTTAGGGAGATGTTGGTTAA-AGGACTAGAGCCTGATGAGT 655 |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| Sbjct 606 TTCTGAGGGTTTAGAGGTGTTTAGGGAGATGTTGGT-ACGAGGAGTAGAGCCTGATGAGT 664 Query 656 TTTCGGTTACTACGGCATTAACGGCTTGTGCACAAGTTGGGGCTTTAGCTCAGGGGAAGT 715 |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| Sbjct 665 TTTCGGTTACTACGGCGTTAACGGCTTTTGCACAAGTTGGGGCTTTAGCTCAAGGGAAGT 724 Query 716 GGATTCATGAGTTTGTTAAAAAGAAGAGTTGGATTGAGTCTGATGTGTTTGTAGGAACGG 775 |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 725 GGATTCATGAGTTTGTGAAGAAGAAGAGATGGATTGAGTCTGATGTGTTTGTAGGAACGG 784 Query 776 CTTTGGTTGACATGTATGCTAAGTGTGGTTGCATAGAGACGGCTGTGGAAGTTTTCAAAA 835 | |||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| Sbjct 785 CATTGGTTGACATGTATGCTAAGTGTGGTTGCATTGAGATGGCTGTGGAAGTTTTCGAAA 844 Query 836 AGTTGACTAGGAGGAATGTCTTCTCATGGGCAGCTTTAATTGGAGGATATGCGGCTTATG 895 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 845 AGTTGAGTAGGAGGAATGTTTTCTCATGGGCAGCTTTAATTGGAGGATATGCGGCTTATG 904 Query 896 GTTATGCAAAGAAAGCTATGACGTGTTTGGAACGGTTGGAACGAGAAGATGGTATTAAGC 955 ||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 905 GTTATGCAAAGAAAGCTATGACGTGTTTGGACCGGATGGAGCGAGAAGATGGTATTAAGC 964 Query 956 CTGATAGTGTAGTTCTTCTTGGGGTCTTAGCCGCTTGTGCTCATGGAGGATTTCTTGAAG 1015 |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| Sbjct 965 CTGACAGTGTAGTTCTTCTTGGGGTCTTAGCTGCTTGTGCTCATGGGGGATTTCTTCAAG 1024 Query 1016 AAGGCAGATCAATGTTAGAAAATATGGAAGCTCGATACGAAATTACTCCAAAGCATGAGC 1075 |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1025 AAGGCAGAGCAATGTTAGGAAATATGGAAGCTCGATACGGAATTACTCCAAAGCATGAGC 1084 Query 1076 ATTACAGCTGTATAGTAGATTTGATGTGCAGAGCTGGAAGATTAGATGATGCACTTAATC 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1085 ATTACAGCTGTATAGTAGATTTGATGTGCAGAGCTGGAAGATTAGATGATGCACTTGATC 1144 Query 1136 TTATCGAAAAAATGCCAATGAAACCGCTTGCATCTGTTTGGGGTGCTTTACTGAATGGCT 1195 |||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 1145 TTATCGAAAAAATGCCCATGAAACCTCTTGCATCTGTTTGGGGTGCCTTACTAAATGGTT 1204 Query 1196 GTCGAACGCACAAGAATGTTGAACTCGGAGAACTAGCTGTTAAAAACCTTCTTGACTTGG 1255 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1205 GTCGAACGCACAAGAATGTTGAACTCGGAGAACTAGCTGTTAAAAATCTTCTTGACTTGG 1264 Query 1256 AGAAGGGAAATGTGGAGGAAGAGGAAGCAGCTCTTGTTCAACTATCTAATATTTACTTTA 1315 |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1265 AGAAAGGAAATGCAGAGGAAGAGGAAGCAGCTCTTGTTCAACTATCTAATATATACTTTA 1324 Query 1316 GTGTTCAAAGAAATCCCGAGGCATCTAAAGTTCGTGGGATGATAGAGCAGAGGGGGGTAA 1375 |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 1325 GTGTTCAACGAAATCCCGAGGCATCTAAAGTTCGTGGAATGATAGAGCAGAGGGGGATAA 1384 Query 1376 GAAAGACACCAGGATGGAGTGTGTTAGAGGTGGATGGGAATGTTACCAAATTTGTTTCGG 1435 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1385 GAAAGACACCAGGATGGAGTGTGTTAGAGGTGGATGGAAAGGTTACCAAATTTGTTTCGG 1444 Query 1436 GAGATGTGTCGCACCCAAATCTTCTACAAATTCACACAGTGATTCATCTCCTATCTGTTG 1495 |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1445 GAGATGTGTCTCACCCAAATCTGCTACAAATTCACACAGTGATTCATCTGCTATCTGTTG 1504 Query 1496 ATGCCTTGCAGATT 1509 |||||||||||||| Sbjct 1505 ATGCCTTGCAGATT 1518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56716374805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5