BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28670.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347231 jgi|Araly1|347231|fgenesh1_pg.C_scaffold_5000623 2169 0.0
> Ahg347231 jgi|Araly1|347231|fgenesh1_pg.C_scaffold_5000623
Length=1461
Score = 2169 bits (1174), Expect = 0.0
Identities = 1380/1478 (93%), Gaps = 19/1478 (1%)
Strand=Plus/Plus
Query 172 ATGGTGAAAGCAGTGGTTGGAGAAGATACTAGACTTACTTCTGTTGAAGATCGTCTCTCT 231
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTAAAGCAGTGGTTGGTGAAGATACTAGACTTACTTCTGTTGAAGATCGTCTCTCT 60
Query 232 CACTCAGCTATTCCTGCTGAAGTGGGTCTTGTGATAGGGAAGCTTAGCTCTGTTCTGGAT 291
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CACTCAGCTATTCCTGCTGAGGTGGGTCTTGTGATAGGAAAGCTTAGCTCTGTTCTGGAT 120
Query 292 CGTGGATTTGTCTTTGATTTGATTCCTACACCAAGTAACGATGATGGTGAACCAGCATGC 351
||||||||| | |||||||||||||| ||||| |||||||||||||| |||||||| | |
Sbjct 121 CGTGGATTTTTGTTTGATTTGATTCCCACACCGAGTAACGATGATGGAGAACCAGCTTCC 180
Query 352 GCGGTTTTGGAGACCAAAGATGATAAAAGGAAGCCTTCTAAGTCTAAATCTCAGTCATCT 411
||||||||||||||||||||| |||||||||| | | | ||| | ||||||||
Sbjct 181 TCGGTTTTGGAGACCAAAGATGTTAAAAGGAAG-C--C--A-TCT--A----AGTCATCT 228
Query 412 GAGTCGTCTTCTTTATCGATTGATTCAGATTGGGTTGCAGAACATGCTCGACAGGTATCG 471
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 229 GAGTCGTCTTCTTTATCAATTGATTCCGATTGGGTTGCAGAACATGCCCGACAGGTATCG 288
Query 472 AGAATGCTGTTGGGTGGCATGAAGGTTGTTGGTATCTATGTATGGGCTAGTGACA-TTGC 530
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 289 AGAATGTTGTTGGGTGGGATGAAGGTTGTTGGTATCTATGTATGGGCTAGTGACACTT-C 347
Query 531 TTTTAAGAATTCTACTATGATCCTTTGCCAGGCTATGAAGGCAGTTTCGGATGCAATACG 590
||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 348 TTTTAAGAATTCTACTATGATTCTCTGCCAGGCTATAAAGGCAGTTTCAGATGCAATACG 407
Query 591 ACATTTGGATCCTAGCTTGAATGAAGCTCTTCTTATTCACATATGTTACAGTCCGAGGAG 650
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ACATTTGGACCCTAGCTTGAATGAAGCTCTTCTTATTCACATATGTTACAGTCCGAGGAG 467
Query 651 ATGGAATTGCCGAACTTGTTTGCTGAGTTCAAGTATTACATCAAGTAATCTTCGACCTTG 710
|||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 468 ATGGAATTGCCGAACTTGTTTGTTGAGCTCAAGTATTACATCAAGTAGTCTTCGACCTTG 527
Query 711 TGACTTTAAGCTGGGAAAGGTGTTAAGTTCTCTACAGAGGTTTAGGTGCAGCTACAACTT 770
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 528 TGACTTTAAGCTGGGAAAGGTATTAAGTTCTCTACAGAGGTTTAGGTGCAGCTACAGCTT 587
Query 771 TAGTTTCAGATTACCAATTTACGGTGAGGGTGGGTCAAGTGCACAAACGTTTACTGATAC 830
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 588 TAATTTCAGATTACCAATTTACGGTGAGGGTGGGTCAAGTGCACAAACATTTACTGATAC 647
Query 831 CATCCGTAAAGAACTTGCAATTCATGCAAAGGAGCTAAATAGTGCAAATGCAATGATTGA 890
| ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 648 CCTCCGTAAAGAACTTGCAGTTCATGCAAAAGAGCTGAATAGTGCAAATGCAATGATTGA 707
Query 891 TGGAGACTTGGTGCATAACGACGAGCCTTGTAACACGGATGGTGAACATGAAATTGAATT 950
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 708 TGGAGACTTGGTGCATAACGACGAGCCTTGTAACACGGATGGCGAACATGAAATCGAATT 767
Query 951 GTTATTCCCATTCATGAAAGATACTCGTGCTGAGGCATCAACTGCAAAGAACGTTACTGG 1010
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 768 GTTATTTCCATTCATGAAAGATAGTCGGGCTGAGGCATCAACTGCAAAGAATGTTACTGG 827
Query 1011 AATTCTACTCTTCACTGGTTCTGTATTCTCTTACGCCTACTTGAACGTGAAAGAACCAGT 1070
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 AATTTTACTCTTCAGTGGTTCTGTATTCTCTTACGCCTACTTGAACGTGAAAGAACCAGT 887
Query 1071 TTCACAAGCTATTGCTGATATTAAGGCTGACATTATTAGAAGTCTGCAAAGTAGATTGGA 1130
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 888 TTCACAAGCTATTGCTGATATTAAGGCTGACATTATTAGGAGTCTGCAAAGTAGATTGGA 947
Query 1131 CATTATCTGTGATGAGTCCGAGCAGGATCTCAATCCAACTGATGTGGGAGACAATGAAAA 1190
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 948 CATTATCTGTGATGAGTCCGAGCAGGATCTCAATCCAACTGACGTTGGAGACAATGGTGA 1007
Query 1191 TGCAGACGGGATGTCGAAAATTCCCATCTCCAAACTTATCCTCAATTCATCTATAAAAGC 1250
|||||| | |||||||||||||||||| |||||||| ||||| |||||||||| ||||||
Sbjct 1008 TGCAGATGAGATGTCGAAAATTCCCATTTCCAAACTCATCCTGAATTCATCTACAAAAGC 1067
Query 1251 GTGCCATCTCCGTCTTCCCAGGAGAGTTCTTGTTCCGTGGCTGTCCGGTATGTTCATCTG 1310
|| ||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 1068 ATGTCATCTCCGTCTCCCCAGGAGAGTTCTTGTTCCGTGGCTGGCGGGTATGAACATCTG 1127
Query 1311 CGATTATCTACAGCCGTTCGAATCACTCGAGGTGGTAAAAGAACGGTGTA-TCGAGTTGA 1369
||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1128 CGATTATCTACAGCCATTCGAATCACTCGAGGTGGTAAAAGAACGGTGTACT-GAGTTAA 1186
Query 1370 TGTCCATGGAACATTCTTCTATAGACGAATCAAAGATTTCAGAAGTGGAAACCGAAACGT 1429
|||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
Sbjct 1187 TGTCCATGGAACATTCTTCTATCGACGCATCAAAGATATCAGAAGTGGAAACCGAAACAT 1246
Query 1430 CTTTATTGATCGCGGAATCAATGTGGGACGTGATATCTCCTGCGACATCTGCTTCCAGCT 1489
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1247 CTTTATTGATCGCGGAATCAATGTGGGACGTGATATCTCCTGCGACTTCAGCTTCCAGCT 1306
Query 1490 TCTGCCTAGGAGGGAATGTGGAAAGGACAACGGATGGTGAAGACGAAACCAAGAGAACGA 1549
| | |||||||||||||||||||||||||| || |||||||| |||| |||||||||||
Sbjct 1307 TTTACCTAGGAGGGAATGTGGAAAGGACAA-GG--GGTGAAGATGAAAGCAAGAGAACGA 1363
Query 1550 GTAACGCAAGTACTGCATCAAATGTCCCGATTTTGGTCGGGATTTTCGTACTTTTACTCT 1609
||||| |||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1364 GTAACACAAGTACTACATCTAATGTCCCGATGTTGGTCGGGATTTTCGTGCTTTTACTCT 1423
Query 1610 CAATTGTATTAGGATTCATGCTTTACCAGAGCGATTAG 1647
| ||||||||||||||||||||||||||||||||||||
Sbjct 1424 CGATTGTATTAGGATTCATGCTTTACCAGAGCGATTAG 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5