BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28680.1

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941803 jgi|Araly1|941803|scaffold_602347.1                        664    0.0  


> Ahg941803 jgi|Araly1|941803|scaffold_602347.1
Length=1529

 Score =  664 bits (359),  Expect = 0.0
 Identities = 421/451 (93%), Gaps = 4/451 (1%)
 Strand=Plus/Plus

Query  69    TGTTGGCAGCTTGGTTCAAGCTAAAATACCCATACATAGCGCTCGGGGCTTTAGCATCCT  128
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  602   TGTTGGCAGCTTGGTTCAAGCTAAAATACCCACACATAGCGCTCGGGGCTTTAGCATCCT  661

Query  129   CAGCCCCCCTCCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTTTTACATAGTAA  188
             ||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  662   CAGCCCCTCTTCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTTTTATATAGTAA  721

Query  189   CCAAAGTTTTCAAGGAAATGAGCAAGGAATGTCATAACAAGATACATAAATCTTGGGATG  248
             |||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||
Sbjct  722   CCAAAGTTTTCAAGGAAACGAGCCAGAAATGTCATAACAAGATACGTAAATCTTGGGATG  781

Query  249   AAATAGACAGGATTGCTGCCAAACCTAACAGTCTCTCAATCCTCAGCAAAAATTTCAAGC  308
             ||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||||
Sbjct  782   AAATAGACAGGATTGCTGCCAAACCCAACGGTCTGTCAATCCTCAGCAAAAAATTCAAGC  841

Query  309   TGTGCAATCCTTTGAACGACATTATCGAACTCAAAAGCTATGTGAGTTACATATACG-CG  367
             |||||||||||||||||||||  || ||||||||||||||| ||||| ||||||||| ||
Sbjct  842   TGTGCAATCCTTTGAACGACACCATTGAACTCAAAAGCTATCTGAGTAACATATACGCCG  901

Query  368   AGGACAGCTCAATACAGCGACAATCAGT-TCTCGGTTGCCAGGTTGTGTGAGGCTATTAA  426
              ||||||||||||||| | |||||| || | ||||||||||| ||||| |||||||||||
Sbjct  902   -GGACAGCTCAATACAACAACAATCCGTAT-TCGGTTGCCAGCTTGTGCGAGGCTATTAA  959

Query  427   CACAAGCCCACCAAACACTAAGAGTGATCTACTAGACCAGATCTTCGCAGGTGTGGTTGC  486
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960   CACCAGCCCACCAAACACTAAGAGTGATCTACTAGACCAGATCTTCGCAGGTGTGGTTGC  1019

Query  487   TTCTAGAGGAAATATTTCTTGTTATGGTATG  517
             |||| | || |||||||||||||||||||||
Sbjct  1020  TTCTGGGGGTAATATTTCTTGTTATGGTATG  1050



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22015774853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5