BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28690.2
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936652 jgi|Araly1|936652|scaffold_500843.1 2298 0.0
> Ahg936652 jgi|Araly1|936652|scaffold_500843.1
Length=1473
Score = 2298 bits (1244), Expect = 0.0
Identities = 1366/1425 (96%), Gaps = 7/1425 (0%)
Strand=Plus/Plus
Query 1 GAGAAATTGGGTGTTGAGAAAGGTGAAAAAGGGAAGATGATGAGTaaaaaaaaGAATGTT 60
|||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 54 GAGAAATTAGGTGTTGAGAAAGGTGAAAAAGGGAAGATGTTGAGTAAAAAGACGAATGTT 113
Query 61 AAGAAAGATGGAGATGAGAGTGAAAGTGGGTTTTGGTTTAGATTCAAGTTTATCTTTAGT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 AAAAAAGATGGAGATGAGAGTGAAAGTGGGTTTTGGTTTAGATTCAAGTTTATCTTTAGT 173
Query 121 TGTATCTCTTCTAGATCAAAAGTTGATAGTTCCATGAATGCTACTGCTGTTATTGCAGAA 180
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 174 TGTATCTCTTCTAGATCAAAAGTTGATAGTTCCATGAATGCTACTACAGTTATAGCAGAA 233
Query 181 CCTAAGAAAGTTATTGAGAAGCTTGAAGGTCATCCAGCTCCGACTAAAGACACTGGCTGT 240
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||
Sbjct 234 CCTAAGAAAGTTATTGAGAAGCTTGAAGGTCAGCCAGCTCCGATTAAAGATACTGGTTGT 293
Query 241 GCGGAGAGCGGTTCCTCAACACCTCTAATGAGCGGGGAATTGAAGTATTCTTCTAAGCTA 300
||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct 294 GCGGAGAGCGGCTCCTCGACACCTTTAATGAGCGGCGAATTGAAGTATTCTTCTAAGCTA 353
Query 301 CGGATTTTCATGTTTAACGACCTTAAGTTAGCCACTAGGAATTTCAGACCAGAGTCTCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CGGATTTTCATGTTTAACGACCTTAAGTTAGCCACTAGGAATTTCAGACCAGAGTCTCTT 413
Query 361 CTCGGTGAGGGTGGGTTTGGATGTGTTTTTAAAGGATGGATAGAGGAGAATGGAACTGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTCGGTGAGGGTGGGTTTGGATGTGTTTTTAAAGGATGGATAGAGGAGAATGGAACTGCA 473
Query 421 CCTGTCAAGCCTGGTACTGGTCTAACTGTAGCTGTCAAAACACTGAACCCAGATGGCCTT 480
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 CCTGTTAAGCCTGGTACTGGTCTAACTGTAGCTGTCAAAACACTGAATCCAGATGGCCTT 533
Query 481 CAAGGTCACAAGGAGTGGCTGGCTGAAATTAACTTCCTTGGAAACCTTGTTCACCCCAGT 540
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 534 CAAGGTCACAAGGAGTGGCTGGCTGAGATTAACTTCCTTGGAAACCTTGTTCACCCAAGT 593
Query 541 CTGGTTAAATTAGTTGGCTACTGCATGGAAGAAGACCAAAGGCTGCTTGTTTACGAGTTT 600
|| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 594 CTTGTTAAATTAGTGGGCTATTGCATGGAAGAAGACCAACGGCTGCTTGTTTACGAGTTT 653
Query 601 ATGCCACGAGGAAGTTTGGAGAACCATCTTTTCAGAAGGACCTTACCTCTCCCTTGGTCT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATGCCACGAGGGAGTTTGGAGAACCATCTTTTCAGAAGGACCTTACCTCTCCCTTGGTCT 713
Query 661 GTTC-GAATGAAAATTGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGC 719
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GT-CAGAATGAAAATTGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGC 772
Query 720 TGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATTTTACTGGATGGGGAATA 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 773 TGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATATTACTGGATGCGGAATA 832
Query 780 TAATGCAAAGCTCTCTGATTTTGGGCTTGCAAAAGATGCTCCAGACGAGAAAAAATCCCA 839
|||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 833 TAATTCAAAGCTGTCTGATTTTGGGCTTGCGAAAGATGCTCCAGACGAGAAAAAATCCCA 892
Query 840 CGTATCAACCCGAGTCATGGGAACTTATGGTTATGCTGCCCCTGAATATGTAATGACTGG 899
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 893 TGTATCAACCCGAGTCATGGGAACTTATGGTTATGCTGCCCCCGAATATGTAATGACTGG 952
Query 900 ACATCTGACAACGAAGAGCGATGTATACAGTTTTGGAGTAGTTTTACTTGAAATATTAAC 959
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 953 ACATCTTACAACGAAGAGCGATGTATACAGCTTTGGAGTAGTTTTACTTGAAATATTAAC 1012
Query 960 TGGACGAAGATCTGTGGATAAAAGTCGGCCGAACGGGGAACAGAACTTGGTAGAATGGGT 1019
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1013 CGGACGAAGATCTGTGGATAAAAGTCGGCCGAACGGGGAACAAAACTTGGTCGAATGGGT 1072
Query 1020 GAGACCTCATCTCTTAGACAAGAAAAGGTTTTACCGGCTATTAGATCCTCGGTTAGAGGG 1079
|||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 1073 GAGACCTCATCTCTTAGACAAGAAAAGGTTGTGCCGGTTATTAGATCCTCGGTTAGAGGG 1132
Query 1080 TCACTACTCGATCAAAGGTGCTCAGAAAGCCACACAAGTAGCGGCGCAATGCCTTAACCG 1139
||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1133 TCACTACTCAATTAAGGGTGCTCAGAAAGCCACGCAAGTAGCGGCGCAATGCCTTAACCG 1192
Query 1140 AGACTCCAAAGCCAGACCGAAA-ATGAGTGAAGTTGTGGAAGCCTTAAAGCCATTACCAA 1198
|||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1193 AGACTCTAAAGCTAGACC-AAAGATGAGTGAAGTTGTGGAAGCCTTAAAGCCGTTACCAA 1251
Query 1199 ATCTTAAAGACTTTGCTAGCTCTTCTTCTTCTTTCCAAACAATGCAGCCTGTTGCTAAGA 1258
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ATCTTAAAGACTTTGCGAGCTCTTCTTCTTCTTTCCAAACAATGCAGCCTGTTGCTAAGA 1311
Query 1259 ACGGAGTCAGAACACAAGGAGGAGGGTTTGTGTCGAGAAATGGACCGCCAATGAGGAGTT 1318
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1312 ACGGAGTCAGAACACAAGGAGGAGGGTTTGTATCGAGAAATGGACCGCCAATGAGGAGTT 1371
Query 1319 TGTCTAGCTTAAACTTGCCTCAAGCATCCCCTTATCGTTATGCCCGTCAATCACCAAAGC 1378
|||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1372 TGTCTAGCTTAAACCTGCCTCAAGCATCCCCTTATCGTTATGCTCGACAATCACCAAAGC 1431
Query 1379 CTAAAGGAAAAGAGCCATGACTCCAAAATAGATATTAATTTAGTT 1423
||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 1432 CTAAAGGAAAAGAGCCATGACTC-AAA-TAGATATTAATT-AGTT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5