BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28700.1
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936653 jgi|Araly1|936653|scaffold_500844.1 2320 0.0
> Ahg936653 jgi|Araly1|936653|scaffold_500844.1
Length=1457
Score = 2320 bits (1256), Expect = 0.0
Identities = 1389/1455 (95%), Gaps = 2/1455 (0%)
Strand=Plus/Plus
Query 5 ATTTCGAAATCGCGAAGATGCTGAGAAAACTACTAACGCAAACATCTTCTCGCCGTCTTC 64
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 ATTTTGAAATCGCGAAGATGCTGAGAAAACTACTAACGCAAACATCTTCTCGCCGTCTTC 63
Query 65 TCTTTTCCGGTGTTCCTCCTCTCTTCTCTAAATCCACTATTTCACCGTTTTCCTCATTAT 124
||| |||||| |||||||||||||||| |||||| || | |||||||||||||||||||
Sbjct 64 TCTCCTCCGGTATTCCTCCTCTCTTCTCCAAATCCTCTCTCTCACCGTTTTCCTCATTAT 123
Query 125 CCTCTTCTCCGGAGCCACCGTCCTCAGAGAGTCCCGCCGTTGAACATCCCGGAACAACAA 184
||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||| |
Sbjct 124 CCTCTTCACCGGAGCCACCGTCCTCAGAGAGTACCACCGTCGAACATCCCGGAACAACGA 183
Query 185 TCTCCATCGATCGTTCTTCTCTCTATACTCCTCCCGATCACTCTCATGAATCCACACCTG 244
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 184 TCTCCGTCGATCGTTCTTCTCTCTATACTCCTCCTGATCACTCTCATGAGTCCACACCTG 243
Query 245 ATTCTGAGCTCGTTAAGCATCTCAAGAGTATTATTAAGTTTCGGGGTGGACCAATCTCAG 304
| ||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 244 AGACTGAGCTCGTTAAGCATCTCAAGAGCATTATCAAGTTTCGAGGTGGTCCAATCTCAG 303
Query 305 TAGCTGAGTATATGGAGGAGGTTTTGACTAATCCTAAAGCAGGATTCTATATGAATCGTG 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 304 TAGCTGAGTATATGGAGGAGGTTTTGACTAATCCTAAAGCAGGTTTCTATATGAATCGTG 363
Query 365 ATGTTTTTGGAGCTCAAGGTGATTTCATTACTTCTCCAGAAGTTAGCCAAATGTTCGGCG 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 364 ATGTTTTTGGAGCTCAAGGTGATTTCATTACTTCTCCTGAAGTTAGCCAAATGTTCGGCG 423
Query 425 AGATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTA 484
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AGATGATTGGTGTATGGACTGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTA 483
Query 485 ATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCGATCTCCTTCGTGGTACAT 544
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 484 ATCTTGTTGAGCTAGGTCCAGGTCGTGGAACACTCATGGCTGATCTTCTTCGTGGTACAT 543
Query 545 CGAAGTTTAAGAATTTCACGGAATCATTGCATATACATTTGGTGGAATGTAGTCCTGCAT 604
| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 544 CAAAGTTTAGGAATTTTACGGAATCGTTGCATATACATTTGGTGGAATGTAGTCCTGCAT 603
Query 605 TGCAGAAGCTTCAGCACCAGAATCTGAAATGTACAGATGAGAGTAGTTCGGAGAAGAAAG 664
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 604 TGCAGAAGCTTCAGCACCAGAATCTGAAATGTATAGATGAGAGTAGTTTAGAGAAGAAAG 663
Query 665 CTGTAAGTTCACTAGCTGGAACACCTGTGCACTGGCATGCTACTCTTCAAGAGGTACCAT 724
| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 664 TTATAAGTTCACTAGCTGGGACACCTGTGCACTGGCATGCTACTCTTGAAGAGGTACCAT 723
Query 725 CAGGAGTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CAGGAGTACCAACATTAATCATTGCTCATGAGTTTTATGATGCTCTTCCAGTTCATCAAT 783
Query 785 TTCAGAAATCTACTCGTGGCTGGTGTGAGAAAATGGTTGATGTAGGAGAAGATTCAAAGT 844
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TTCAGAAATCTTCTCGTGGCTGGTGTGAGAAAATGGTTGATGTAGGAGAAGATTCAAAGT 843
Query 845 TCCGCTTTGTTCTATCCCCACAGCCTACACCTGCAGCCTTGTATCTCATGAAACGTTGCA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TCCGCTTTGTTCTATCCCCACAGCCTACACCTGCAGCCTTGTATCTCATGAAACGTTGCA 903
Query 905 CATGGGCTACACCTGAGGAAAGGGAGAAAATGGAACATGTCGAGATCAGCCCAAAATCAA 964
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 904 CATGGGCTACACCTGAGGAAAGGGAGAAACTGGAACATGTCGAGATCAGCCCAAAATCAA 963
Query 965 TGGACTTGACCCAAGAAATGGCCAAGAGAATAGGTTCTGATGGAGGTGGAGCACTTATAA 1024
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 964 TGGATTTGACCCAAGAAATGGCGAAGAGAATAGGTTCTGATGGAGGTGGAGCACTTATAA 1023
Query 1025 TCGATTACGGGATGAATGCAATCATTTCAGACAGTCTTCAGGCTATTAGAAAACACAAGT 1084
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1024 TCGATTACGGGATGAATGAAATCATTTCAGACAGTCTTCAGGCTATTAGGAAACACAAGT 1083
Query 1085 TTGTCAACATACTAGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGACTTTCCTT 1144
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1084 TTGTCAACATACTGGATGATCCCGGGTCTGCCGATCTAAGTGCTTATGTCGATTTTCCTT 1143
Query 1145 CAATAAAACACTCCGCTGAGGAAGCTTCAGAAAATGTCTCAGTCCATGGACCTATGACTC 1204
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1144 CAATAAAACACTCTGCTGAAGAAGCTTCAGAAAATGTTTCAGTCCATGGACCTATGACTC 1203
Query 1205 AGTCCCAGTTCTTGGGTTCGCTTGGAATAAACTTCAGAGTTGATGCATTGCTACAGAATT 1264
| || |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1204 AATCTCAGTTCTTGGGTTCACTTGGAATAAACTTCAGAGTTGATGCGTTGCTTCAGAACT 1263
Query 1265 GTAACGACGAGCAAGCTGAGTCTTTAAGGGCAGGATACTGGCAGCTTGTTGGCGATGGTG 1324
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1264 GTAATGACGAGCAAGCTGAGTCCTTAAGGGCAGGATACTGGCAGCTTGTTGGCGATGGTG 1323
Query 1325 AAGCGCCTTTCTGGGAAGGACCCAATGAACAGACACCGATTGGAATGGGGACGAGGTATC 1384
|||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1324 AAGCACCTTTCTGGGAAGGACCCGATGAACAAACACCGATTGGAATGGGGACGAGGTATC 1383
Query 1385 TTGCAATGAGTATTGTCAACAAAAACCAAGGCATTCCAGCTCCATTCCAATAAAGAAA-G 1443
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1384 TGGCAATGACTATTGTCAACAAAAACCAAGGCATTCCAGCTCCATTCCAATAA-GAAAAG 1442
Query 1444 TTGAAACTTTCAGAG 1458
|||||||||||||||
Sbjct 1443 TTGAAACTTTCAGAG 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64410604295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5