BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28715.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484647 jgi|Araly1|484647|fgenesh2_kg.5__639__AT3G28715.1 1923 0.0
Ahg484645 jgi|Araly1|484645|fgenesh2_kg.5__637__AT3G28710.1 1766 0.0
> Ahg484647 jgi|Araly1|484647|fgenesh2_kg.5__639__AT3G28715.1
Length=1411
Score = 1923 bits (1041), Expect = 0.0
Identities = 1158/1213 (95%), Gaps = 13/1213 (1%)
Strand=Plus/Plus
Query 51 TTCAAAGTTAtcttcttcttcgcgatcacaatctctgcttcgatttcttcttcttcttcA 110
||||||||||||||||||||||||||| ||| || || |||||||||||||
Sbjct 1 TTCAAAGTTATCTTCTTCTTCGCGATCGCAA--------TC---TT-TTCTTCTTCTTCA 48
Query 111 GAATTCAGATCAGATCTCCGGCGATAATCTTTGAGATCTGAAATTTCTTACAATCAGGAG 170
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 49 GAATTCAGATCAGATCTCCGGCGACAATCTTTGAGATCTG-AATATCTTACAATCAGGAG 107
Query 171 AGAAAGATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCG 230
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 108 AGAAAGATGTACGGATTCGAGGCGCTTACGTTCAACATCCATGGCGGATACTTGGAGGCG 167
Query 231 ATCGTCAGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAG 290
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 168 ATCGTCAGAGGCCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAG 227
Query 291 TGTGAGAACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTC 350
||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 228 TGTGAAAACCTAGACGACATCAAGATGCATCTCTCTGCTACCAAATACGGTTCTTATCTC 287
Query 351 CAAAACGAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTT 410
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 288 CAAAACGAACCGTCACCTCTGCATACAACTACAATTGTGGAGAAGTGTACTCTCAAGCTT 347
Query 411 GTTGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAG 470
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 348 GTTGATGATTACAAGCATATGCTTTGTCAAGCTACTGAACCAATGTCTACCTTTTTAGAG 407
Query 471 TACATCAGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCAC 530
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 408 TACATCAGATATGGCCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTGCAC 467
Query 531 GAGAGAGATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATT 590
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 468 GAAAGAGATGTTCAAGAGTTAATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATT 527
Query 591 GCTACACTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACT 650
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 528 GCTACACTAGCAGTTGCTCAGAACATGCGTGAACTCTATAGGTTGGTGCTTGTGGACACT 587
Query 651 CCTCTGGCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATA 710
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 588 CCTCTGGCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATA 647
Query 711 GAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAG 770
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 GAGATTATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAG 707
Query 771 AAACTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 708 AAACTTGGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCAGACAGA 767
Query 831 AGAGCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AGAGCAGTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAG 827
Query 891 AAACTGTACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGT 950
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 828 AAACTGTACTCCAACTTTGGCCTCCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGT 887
Query 951 GAAGACATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTC 1010
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 888 GAAGACATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTC 947
Query 1011 TCCAAGATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTC 1070
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 TCCAAGATGTCTTATGGAGAAAGCCAGATGCTGGACAAGGCATTTTATGAAGAAGAAGTC 1007
Query 1071 AGAAGGCTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATG 1130
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1008 AGAAGGCTTTGCTTAGCCTTTGAGCAACAGTTCCATTACGCGGTATTCTTTGCCTATATG 1067
Query 1131 AGGTTGCGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAAC 1190
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AGGTTGAGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAAT 1127
Query 1191 CAGAAGTCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGTGTAA 1250
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1128 CAGAAGTCCAGGATCCACGATAGTGTCGTCTACATGTTCTGAGTCTGGTAAGAACTGTAA 1187
Query 1251 TCTGTCTGaaaaa 1263
||| |||||||||
Sbjct 1188 TCTTTCTGAAAAA 1200
Score = 326 bits (176), Expect = 4e-88
Identities = 201/213 (94%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 1293 GTTGTTGGTTTTCTTCATTACTCCATTTTTATTAGAGAATCTGCTGTACAATCTTGCGGT 1352
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1201 GTTGTTGGTTTTCTTCATTACTCCATTTTTACCCGAGAATCTGCTGTACAATCTTGCGGT 1260
Query 1353 CTACATTCACTGTTTATGTCGCTCTGCGTGTATCAAAAACTGCTCAATAAGAATCTATCC 1412
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1261 CTACATTCACTGTTTATGTCGCTCTGCGTGTATCAAAAACTCCTTAATAAGAATCTATCC 1320
Query 1413 AATTTGTTTGttttttttCTCCCACATATTCTTGCTTGGTTCCGGTAAACTCTTTGTAAT 1472
||||||||||||| |||| | | ||||||||||||||| ||||||||||||||||||||
Sbjct 1321 AATTTGTTTGTTTGTTTT-TGGC-CATATTCTTGCTTGGATCCGGTAAACTCTTTGTAAT 1378
Query 1473 GTCGAATAATTTACGATGTATACGAATTACTTT 1505
||||||||||||||||||||||||||| |||||
Sbjct 1379 GTCGAATAATTTACGATGTATACGAATCACTTT 1411
> Ahg484645 jgi|Araly1|484645|fgenesh2_kg.5__637__AT3G28710.1
Length=1398
Score = 1766 bits (956), Expect = 0.0
Identities = 1073/1130 (95%), Gaps = 6/1130 (1%)
Strand=Plus/Plus
Query 120 TCAGATCTC-CGGCGATAATCTTTGAGATCTGAAAT-TTCTTACAATCAGGA-GAGAAAG 176
||||||||| | ||| ||||||||||||||| ||| || ||| ||||||| || |||
Sbjct 65 TCAGATCTCTC-ACGACAATCTTTGAGATCTG-AATAATCCTACGATCAGGAGGA-AAAT 121
Query 177 ATGTACGGATTCGAGGCGCTTACGTTCAATATCCATGGGGGATACTTGGAGGCGATCGTC 236
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 122 ATGTACGGATTCGAGGCGCTTACCTTCAACATCCATGGCGGATACTTGGAGGCGATCGTC 181
Query 237 AGAGGCCACCGTGCTGGGCTTCTCACCACCGCCGATTACAACAATCTATGTCAGTGTGAG 296
||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 182 AGAGGTCACCGTGCTGGTCTTCTCACCACCGCCGATTACAATAATCTATCTCAGTGTGAG 241
Query 297 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTCCTTACCTCCAAAAC 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 242 AACCTAGACGATATCAAGATGCATCTCTCTGCCACCAAATACGGTTCTTACCTCCAAAAC 301
Query 357 GAACCATCACCTCTGCATACCACTACAATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 416
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 302 GAACCGTCACCTCTGCATACCACCACCATTGTGGAGAAGTGTACGCTCAAGCTTGTTGAT 361
Query 417 GACTACAAGCATATGCTTTGCCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 362 GACTACAAGCATATGCTTTGTCAAGCTACTGAGCCAATGTCTACCTTTTTAGAGTACATC 421
Query 477 AGATATGGTCATATGATTGACAATGTCGTGCTCATTGTTACTGGAACCCTTCACGAGAGA 536
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 422 AGATATGGCCATATGATCGACAATGTCGTGCTCATTGTTACTGGAACCCTGCACGAGAGA 481
Query 537 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GATGTTCAAGAGTTGATCGAGAAATGTCACCCTTTAGGCATGTTTGACAGTATTGCTACA 541
Query 597 CTAGCTGTTGCTCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 656
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTAGCAGTTGCGCAGAACATGCGGGAACTCTATAGGTTGGTGCTTGTGGACACTCCTCTG 601
Query 657 GCTCCATACTTTTCTGAATGCCTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 716
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 602 GCTCCATACTTTTCTGAATGCTTAACATCAGAGGATCTCGATGACATGAACATAGAGATT 661
Query 717 ATGAGGAATACCCTCTACAAAGCATACCTTGAGGATTTTTACAACTTCTGTCAGAAACTT 776
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 662 ATGAGGAACACCCTCTACAAAGCATACCTTGAGGATTTTTACAAGTTCTGTCAGAAACTT 721
Query 777 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTGGCCTTTGAAGCCGACAGGAGAGCA 836
||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 722 GGTGGCGCAACAGCAGAGATTATGTCTGACCTTTTAGCCTTTGAGGCCGATAGAAGAGCA 781
Query 837 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAACTG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 782 GTGAATATCACTATCAACAGCATTGGCACTGAGCTCACAAGAGAAGACAGGAAGAAATTG 841
Query 897 TACTCCAACTTTGGTCTCCTCTATCCATATGGCCACGAGGAGCTTGCTATCTGTGAAGAC 956
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||
Sbjct 842 TACTCTAACTTTGGTCTGCTCTATCCGTATGGCCACGAGGAGCTTGCTATCTGCGAGGAT 901
Query 957 ATAGATCAGGTTCGTGGTGTTATGGAAAAATACCCTCCGTATCAAGCTATATTCTCCAAG 1016
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 902 ATAGATCAGGTTCGTGGTGTAATGGAGAAATACCCTCCATATCAAGCTATATTCTCCAAG 961
Query 1017 ATGTCTTATGGAGAAAGCCAGATGCTCGACAAGGCATTTTATGAAGAAGAAGTCAGAAGG 1076
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 962 ATGTCTTATGGAGAGAGCCAGATGCTTGACAAGGCATTTTATGAAGAAGAAGTCCGAAGG 1021
Query 1077 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCGGTATTCTTTGCGTATATGAGGTTG 1136
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1022 CTTTGCTTAGCCTTTGAGCAGCAGTTCCATTACGCCGTATTCTTTGCGTATATGAGGTTG 1081
Query 1137 CGGGAGCAGGAGATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1196
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGAGAGCAGGAAATCAGGAACCTGATGTGGATATCTGAATGTGTTGCACAGAACCAGAAG 1141
Query 1197 TCCAGGATCCACGATAGTGTGGTCTACATGTTCTGAGTCTGGTAAGAAGT 1246
||||| |||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1142 TCCAGAATCCACGACAGTGTCGTCTACATGTTCTGAGTGTGGTAAGAAGT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5