BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28720.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896803 jgi|Araly1|896803|Al_scaffold_0005_769 1807 0.0
> Ahg896803 jgi|Araly1|896803|Al_scaffold_0005_769
Length=1191
Score = 1807 bits (978), Expect = 0.0
Identities = 1096/1154 (95%), Gaps = 4/1154 (0%)
Strand=Plus/Plus
Query 913 TTGAGAATCCCTGTGTACTTTGAGGATACGTTGGTGGTTCAGTTTATTCATGTGTATGGG 972
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 40 TTGCGAATTCCTGTGTACTTTGAGGATACGTTGGTGGTTCAGTTGATTCATGTGTATGGG 99
Query 973 TCAGAGGTTAAGGATTCGAGTGGGTTAGATTTGGAGTTTGTGAAGAGAACGTTTATGGAT 1032
|| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 100 TCGGAGGTTAAGGATTCGACTGGGTTAGATTGGGAGTTTGTGAAGAGAACGTTTATGGAT 159
Query 1033 GAAGCTGAGAGTGGTGGGTTGTTGTTAGGTGAACAGAAGTTGAGTTTTAAGAGTTATAGT 1092
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 160 GAAGCTGAGAATGGTGGGTTGTTGTTAGGAGAACAGAAGTTGAGTTTTAAGAGTTATAGT 219
Query 1093 GTGAATTATAGAGAATGTTCGATTTGTTCGTTTGCGGTATCTCGTGGGATGAATTCGTAT 1152
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GTGAATTATAGAGAATGTCCGATTTGTTCGTTTGCGGTATCTCGTGGGATGAATTCGTAT 279
Query 1153 ACTTCTAGGTTTTTGTTTGATAACTATACTTTGATTGTGAGTGAGTATTTGGATTCTAAG 1212
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 280 ACGTCTAGGTTTTTGTTTGATAACTATACTTTGATTGTGAGTGAGTATTTGGATTCCAAG 339
Query 1213 CATATGCATCGGGCGTTGACTGATTCGGCTGAGGAGTTGAGGAGAGTTGCGGGGATTGTT 1272
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 340 CATATGCATCGGGCTTTGACTGATTCAGCTGAGGAGTTGAGGAGAGTTGCGGGGATTGTT 399
Query 1273 GAAGAAGAAGGAAATGAGTTTGCTAGGGTTTTACCTGTTTATGTGTTTGATTTGGATATC 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAAGAAGAAGGAAATGAGTTTGCTAGGGTTTTACCTGTTTATGTGTTTGATTTGGATATC 459
Query 1333 AATACGCCTTTGTTGCTTGATCGGTATCATCAGTCTGTTGCTTTTAGAGATATGGTGATT 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 460 AATACGCCTTTGTTGCTTGATCGGTATCATCAGTCTGTTGCTTTTAGAGATATGGTTATT 519
Query 1393 GCTGTTAGAACTAGAGGAACTCAAACGGTTAGTGATTATACTTGCAACGGGCGTCATGTG 1452
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 520 GCTGTTAGAACTAGAGGAACTCAAACTGTGAGTGATTATACTTGCAATGGGCGTCATGTG 579
Query 1453 TTTGTTCATACGAGAGACTTAGAACGACCTCTCGTTGGTTCCATTCTGCAGAGTATGTGG 1512
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 580 TTTGTTCATACGAGAGACTTAGAACGACCTCTGGTTGGTTCCATTTTACAGAGTATGTGG 639
Query 1513 GGTGTATCTTCTACTCATTTGACATGGAGCCCGAGACATAACACAACTCTAGTTGATTAT 1572
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 640 GGTGTGTCTTCTACTCATTTGACTTGGAGCCCGAGACATAACACAACTCTAGTTGATTAC 699
Query 1573 ACATGGAGCATTGGGCAAACACCGTTTGGACCATTCTCTGATATCTCGTCTCTATCGTTT 1632
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 700 ACATGGAGCATTGGGCAAACACCGTTTGGACCTTTCTCTGATATATCGTCTCTGTCGTTT 759
Query 1633 GTTCAGAAAGATGCTGCTAAGAGAAACGTGATTTTGACATCTTTGAACACAACTATCACA 1692
||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 760 GTTCAGAAAGACGCTGCTAAGAGAAACGTGCTGTTGACATCATTGAACACAACTATCACA 819
Query 1693 AGTGCAATCGATGTTATCGATTCCGCGGTTGCATATGGAGGAGATGTGATCCTACGGAAA 1752
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 820 AGTGCAATCGATGTTATTGATTCCGCGGTTGCTTATGGAGGAGATGTGATCCTACGGAAA 879
Query 1753 CAGAATCGCCACTCTGAGTTCATGCAAAGGTGGAATCTTATGCAGTACAAGCTGGATAAA 1812
|||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 880 CAGAATCGACACTCTGAGTTTATGCAAAGGTGGAATCTTTTGCAGTACAAACTGGATAAA 939
Query 1813 ACGGTTTCTGCTCTATCACACAATGAGTTCGAGATGGCTTTGTTCTACTTAAGATCAGCT 1872
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 940 ACGGTTTCTGCTCTATCACACAATGAGTTCGAGATGGCTTTGTACTACCTGAGATCAGCA 999
Query 1873 TCACACGACTTGTACTCAGTGCATTCAGTAGTGTACCTCGCGTCACAACGGGTAGAAGCG 1932
| ||||||||||||||||| || ||||| ||||||||||| ||||||| ||| ||||||
Sbjct 1000 GCGCACGACTTGTACTCAGTCCACTCAGTGGTGTACCTCGCATCACAACAGGTGGAAGCG 1059
Query 1933 AGTCTCAACTGTTTCAAAGATCCACCGTTCCCATGGGGAACTGTTTCAGTGTCGGGATTC 1992
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1060 AGTCTGAACTGTTTCAAAGATCCTCCGTTCCCATGGGGAACTGTTTCAGTGTCGGGATTC 1119
Query 1993 GGGTTAATGGCTGTTGG-TTACGTGTTCTCGAAAAGAGATAGACTCTTTAGGAA-CAAAC 2050
|||||||||||| |||| |||||||| ||| ||||||||||||||||| || || ||||
Sbjct 1120 GGGTTAATGGCT-TTGGGTTACGTGTACTCAAAAAGAGATAGACTCTTCAG-AAGCAAAA 1177
Query 2051 GAAAACAGTTCTGA 2064
||||||||||||||
Sbjct 1178 GAAAACAGTTCTGA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5