BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28730.1
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936663 jgi|Araly1|936663|scaffold_500854.1 3096 0.0
> Ahg936663 jgi|Araly1|936663|scaffold_500854.1
Length=1980
Score = 3096 bits (1676), Expect = 0.0
Identities = 1887/1989 (95%), Gaps = 14/1989 (1%)
Strand=Plus/Plus
Query 45 cgtgtctctcAACAGAAAACCATGGCGGACGGCCACTCCTTCAATAATATCTCTCTCAGC 104
|||| ||||| || | |||||||| ||||| |||| |||||||||| ||||| ||||||
Sbjct 1 CGTGACTCTC-ACCGGAAACCATGACGGACAGCCATTCCTTCAATAGCATCTCCCTCAGC 59
Query 105 GGTCGCGGTGGAAAGAACCC-GGGTTTACTTAAAATCAATTCTGGAGGAATTCAATGGAA 163
|| ||||| |||| |||||| || || ||||||||||||||||||||||||||||||||
Sbjct 60 GGCCGCGGCGGAACGAACCCTGGACTT-CTTAAAATCAATTCTGGAGGAATTCAATGGAA 118
Query 164 GAAACAAGGTGGTGGAAAAGCTGTGGAAGTTGATAGATCTGATATTGTAAGTGTTAGTTG 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAAACAAGGTGGTGGAAAAGCTGTGGAAGTTGATAGATCTGATATTGTAAGTGTTAGTTG 178
Query 224 GACGAAAGTGACAAAGAGTAATCAATTGGGAGTCAAAACCAAAGATGGATTGTACTACAA 283
||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 179 GACAAAAGTTACAAAGAGTAATCGATTGGGAGTCAAAACCAAAGATGGATTGTACTATAA 238
Query 284 GTTCGTTGGATTTCGAGATCAGGATGTTCCAAGTCTGTCTAGCTTTTTCCAAAGTTCTTA 343
||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 239 GTTCGTTGGATTTAGAGATCAGGATGTTCCTAGTCTGAGTAGCTTTTTCCAAAGTTCTTA 298
Query 344 TGGAAAAACACCGGATGAGAAGCAATTATC-AGTTAGTGGTCGTAATTGGGGAGAGGTGG 402
||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 299 TGGAAAAACACCGGAAGAGAAGCAATTATCGA-TTAGTGGTCGTAATTGGGGTGAGGTGG 357
Query 403 ATTTACACGGGAATACACTAACCTTTTTGGTTGGATCAAAACAAGCTTTTGAAGTATCTT 462
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 ATTTACATGGGAATACACTAACCTTTTTGGTTGGATCAAAGCAAGCTTTTGAAGTATCTT 417
Query 463 TAGCTGATGTTTCACAGACTCAGCTTCAAGGGAAAAATGATGTTACTTTGGAGTTTCATG 522
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 418 TAGCTGATGTTTCACAGACTCAGATTCAAGGGAAAGATGATGTTACTCTGGAGTTTCATG 477
Query 523 TTGATGATACTGCTGGTGCTAATGAGAAAGACTCGCTGATGGAGATTAGTTTTCATATTC 582
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 478 TTGATGATACTGCTGGTGCTAATGAGAAAGACTCGTTGATGGAGATTTGTTTTCATATTC 537
Query 583 CTAATTCCAACACTCAGTTTGTTGGTGATGAAAACCGTCCACCTTCTCAAGTTTTCAATG 642
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 CTAGTTCCAACACCCAGTTTGTTGGTGATGAAAACCGTCCACCTTCTCATGTTTTCAATG 597
Query 643 ACACAATCGTTGCAATGGCTGATGTTAGTCCTGGAGTTGAGGATGCGGTCGTCACATTTG 702
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 598 ACACAATCGTTGCAATGGCTGATGTTAGTTCTGGAGTTGAGGACGCGGTCGTCACATTTG 657
Query 703 AGAGTATTGCAATCCTCACACCCAGGGGTCGGTACAATGTGGAACTTCACCTTTCTTTCT 762
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 658 ATAGTATTGCAATCCTCACACCCAGGGGTCGGTACAGTGTGGAACTTCACCTTTCTTTCT 717
Query 763 TACGATTGCAAGGACAAGCTAATGACTTTAAAATCCAGTACAGTAGCGTTGTCCGTTTGT 822
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 718 TACGTTTGCAAGGACAAGCTAATGACTTTAAAATCCAATACAGTAGTGTTGTCCGGTTGT 777
Query 823 TCTTGCTTCCAAAGTCAAACCAACCACACACGTTTGTTGTTATCTCTCTAGACCCACCAA 882
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 778 TCTTGCTTCCAAAGTCAAACCAACCACACACGTTTGTTGTTATCTCTCTTGACCCACCAA 837
Query 883 TCCGGAAAGGTCAGACAATGTACCCCCACATTGTTATGCAGTTTGAAACAGACACCGTTG 942
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 838 TCCGGAAAGGTCAGACAATGTACCCCCACATTGTGATGCAGTTTGAGACAGACACCGTCG 897
Query 943 TCGAAAGTGAACTGTCAATTAGTGATGAACTTATGAATACAAAGTTCAAGGACAAGCTGG 1002
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 898 TCGAAAGTGAACTGTCAATTAGTGATGATCTTATGAATACAAAGTTCAAGGACAAGCTTG 957
Query 1003 AGCGATCATATAAGGGTCTCATTCATGAAGTATTCACCACCGTGTTGCGTTGGCTGTCTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGCGATCATATAAGGGTCTCATTCATGAAGTATTCACCACCGTGTTGCGTTGGCTGTCTG 1017
Query 1063 GTGCAAAGATCACTAAACCTGGGAAGTTCCGCAGTTCCCAAGATGGGTTTGCAGTGAAAT 1122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 GTGCAAAGATCACTAAACCTGGGAAGTTCCGAAGTTCCCAAGATGGGTTTGCAGTGAAAT 1077
Query 1123 CGTCTCTCAAGGCAGAAGATGGGGTTCTTTATCCACTCGAGAAGGGATTTTTCTTCTTAC 1182
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CATCTCTTAAGGCAGAAGATGGGGTTCTTTATCCACTCGAGAAGGGATTTTTCTTCTTAC 1137
Query 1183 CTAAACCTCCAACGCTTATACTTCACGATGAGATTGACTATGTCGAGTTTGAAAGGCATG 1242
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1138 CTAAACCTCCAACGCTTATACTTCATGATGAGATTGACTATGTTGAGTTTGAAAGGCATG 1197
Query 1243 CTGCTGGTGGTGCTAACATGCATTACTTTGATCTTCTCATAAGACTGAAAACTGACCATG 1302
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1198 CTGCTGGTGGTGCTAATATGCATTACTTTGATCTTCTCATAAGACTGAAAACTGATCATG 1257
Query 1303 AACATCTGTTCCGTAACATTCAAAGAAATGAGTATCACAATCTCTATACCTTCATAAGCT 1362
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1258 AACATCTGTTCCGTAACATTCAAAGGAATGAGTATCATAATCTCTATACCTTCATAAGCT 1317
Query 1363 CTAAGGGTTTGAAGATTATGAACCTTGGAGGTGCGGGTACCGCAGACGGTGTTGCTGCTG 1422
| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 1318 CCAAGGGTTTGAAGATTATGAACCTTGGAGGTGCGGGAACCACAGATGGTGTTGCTGCTG 1377
Query 1423 TTCTTGGGGATAATGATGATGATGATGCTGTTGACCCTCATCTT-ACGCGTATCAGAAAC 1481
||||||||||| |||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1378 TTCTTGGGGATGATGATGATGATGATGCTGTTGACCCTCATCTTGA-GCGTATCAAAAAC 1436
Query 1482 CAAGCTGCTGATGAGAGTGATGAGGAGGACGAAGACTTTGTTATGGGTGAGGATGATGAT 1541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CAAGCTGCTGATGAGAGTGATGAGGAGGACGAAGACTTTGTTATGGGTGAGGATGATGAC 1496
Query 1542 GGTGGTTCACCAACTGATGATTCTGGCGGGGACGACTCTGATGCTAGTGAAGGCGGTGTA 1601
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1497 GGCGGTTCACCAACTGATGATTCTGGCGAGGACGACTCTGATGCTAGTGAAGGCGGTGGA 1556
Query 1602 GGAGAGATAAAAGAGAAATCTATCAAGAAGGAACCTAAGAAAGAGGCTTCGTCATCGAAA 1661
||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1557 GGAGAGA-AA--GAGAAATCTATCAAGAAGGAACCCAAGAAAGAGGCTTCGTCATCGAAA 1613
Query 1662 GGATTGCCTCCTAAGAGGAAAA-CTGT-AGCCGCAGACGAAGGCAGTAGTAAGAGGAAGA 1719
|||||||| ||||| || |||| | || ||||||||||||||||||||| |||||||| |
Sbjct 1614 GGATTGCCCCCTAAAAG-AAAAGC-GTCAGCCGCAGACGAAGGCAGTAGCAAGAGGAAAA 1671
Query 1720 AGCCGAAGAAGAAGAAGGATCCCAACGCACCAAAAAGAGCAATGTCTGGTTTCATGTTCT 1779
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1672 AGCCGAAGAAGAAGAAGGATCCCAACGCACCAAAAAGAGCGATGTCTGGTTTCATGTACT 1731
Query 1780 TTTCCCAAATGGAAAGAGATAACATAAAGAAGGAACACCCAGGAATAGCATTTGGAGAGG 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TTTCCCAAATGGAAAGAGATAACATAAAGAAGGAACACCCAGGAATAGCATTTGGAGAGG 1791
Query 1840 TGGGAAAGGTGCTTGGAGATAAGTGGCGTCAAATGTCTGCTGATGATAAAGAGCCATATG 1899
|||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 1792 TGGGAAAGGTGCTTGGAGATAAGTGGCGCCAAATGTCTGCTGAGGAAAAAGAGCCTTATG 1851
Query 1900 AAGCCAAGGCTCAAGTCGACAAGCAGCGATACAAGGATGAGATCAGTGATTACAAGAACC 1959
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1852 AAGCCAAAGCTCAAGTCGACAAGCAGCGATACAAGGATGAGATTAGTGATTACAAGAACC 1911
Query 1960 CTCAGCCGATGAATGTGGACTCAGGAAACGATTCCGATAGTAACTAAACTTTGATTCTCC 2019
|||||||| |||| ||||||||||||||||| || || ||||||||||||||||| | ||
Sbjct 1912 CTCAGCCGGTGAACGTGGACTCAGGAAACGAGTCTGACAGTAACTAAACTTTGATGCCCC 1971
Query 2020 AACATTCTC 2028
|| ||||||
Sbjct 1972 AATATTCTC 1980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84217531695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5