BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28740.1
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484649 jgi|Araly1|484649|fgenesh2_kg.5__641__AT3G28740.1 2156 0.0
Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279 643 0.0
Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281 553 2e-156
> Ahg484649 jgi|Araly1|484649|fgenesh2_kg.5__641__AT3G28740.1
Length=1523
Score = 2156 bits (1167), Expect = 0.0
Identities = 1410/1529 (92%), Gaps = 9/1529 (1%)
Strand=Plus/Plus
Query 21 TAATGGAAACTATATACCTAAttctctctctcttcttcttcttcatcttcctatctctca 80
||||||||||||||||||||||||||| |||||||||| | || ||||| | ||||||
Sbjct 1 TAATGGAAACTATATACCTAATTCTCTGTCTCTTCTTC--C-TCCTCTTCTTCTCTCTCG 57
Query 81 aactcttGTTCGGACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAGTCGACCAT 140
||||||||||| ||||||||| || ||||||||||||||||||||||| | || ||||
Sbjct 58 AACTCTTGTTCCGACCACGGCGGCCCAAACTAAACCTACCGCCGAGTCCTACACGGCCAT 117
Query 141 TTCCGATCATCGGACACCTCCACCTTCTAAAGCTACCACTCCACCGTAGATTtctctctc 200
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 118 TTCCGGTCATCGGACACCTCCACCTCCTAAAGCTACCACTCCACCGTAGATTTCTCTCGC 177
Query 201 tctcAGAATCTTTAAACAACGCCAAGATTTTCTCTC-TCAGCCTCGGCTCTCGTCTAGTT 259
||||| |||||||||||||||||||||||||||||| || |||| ||| |||||||||||
Sbjct 178 TCTCAAAATCTTTAAACAACGCCAAGATTTTCTCTCTTC-GCCTTGGCACTCGTCTAGTT 236
Query 260 TTTGTTGTTTCTTCTCACGCCGTCGCGGAAGAATGTTTCACTAAGAACGACGTCGTGTTA 319
||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||
Sbjct 237 TTTGTTGTTTCTTCTCATGCCGTCGCTGAAGAATGTTTCACCAAGAACGACGTCGTTTTA 296
Query 320 GCTAACCGGCCGGAGTTTCTCGTCGGGAAACATATAGGGTACAACTCTACGACCATGGTT 379
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 297 GCTAACCGGCCGGAGTTTCTCGTCGGGAAACATATAGCGTACAACTCCACCACCATGGTT 356
Query 380 GGTGCGGCTTATGGAGATAGTTGGAGGAATCTTCGACGTATTGGCACCATTGAGATCTTC 439
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 GGTGCGGCTTATGGAGATAGTTGGAGGAATCTTCGACGTATTGGTACCATTGAGATCTTC 416
Query 440 TCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAAGATGAGATCCGACGGCTCATA 499
||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 417 TCGTCTCTTAGGCTTAAGAGCTTCTTATCTATCCGTAAAGATGAGATCCGACGGCTCATA 476
Query 500 ATTTGTCTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGAGATGAAACCATTGTTT 559
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 477 ATTTGTCTATCGAAAAACTCTCAACAAGAGTTTGTGAAAGTGGAGATGAAACCATTGTTT 536
Query 560 ATGTGTTTAACTATCAACAACATCATTAGAATGGTGGCCGGAAAAAGATTCTACGGTGAT 619
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATGGGTTTGACTATCAACAACATCATTAGAATGGTGGCCGGAAAAAGATTCTACGGTGAT 596
Query 620 GGAACAGAGAACGACAACGAGGCTAA-ACACGTGAGACAGCTAATTGCCGAGGTAGTTGT 678
||||||||| |||||| |||||| || ||| || |||||| | ||||| ||||| |||||
Sbjct 597 GGAACAGAGGACGACACCGAGGC-AAGACATGTTAGACAGTTGATTGCGGAGGTGGTTGT 655
Query 679 TAGCGGCGGCGCAGGGAACGCAGCAGACTACTTCCCTATCCTTCGTTACGTAACGAACTA 738
||| |||||||||||||| |||||||| || ||| ||||||||||||| ||||||| ||
Sbjct 656 TAGTGGCGGCGCAGGGAATGCAGCAGATTATTTCTCTATCCTTCGTTATATAACGAATTA 715
Query 739 TGAGAAACATGTTAAGAAGTTAGCAGGTCGTGTTGATGAGTTTTTGCAAAGTCTAGTTAA 798
||||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||
Sbjct 716 CGAGAAACATGTCAAGAAGTTAGCTGTTCGGGTTGATGAGTTTTTGCAAAGTCTAGTGAA 775
Query 799 CGAGAAACGTGTGGAGAAAGTAAAAGGTAACACAATGATCGATCATTTACTTTCTCTACA 858
||||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 776 CGAGAAACGTGAGGAGAAAGTAAAGGGTAACACGATGATCGATCATTTGCTTTCTCTACA 835
Query 859 AGAAACTCAGCCTGATTACTACACGGATGTGATCATCAAAGGAATCATACTTGTTATGAT 918
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGAAACTCAGCCTGACTACTACACGGATGTGATCATCAAAGGAATCATACTTGTTATGAT 895
Query 919 ACTTGCCGGGACTGATACATCAGCTGGAACGTTAGAATGGGCGATGTCGAATTTGTTGAA 978
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 896 ACTTGCCGGGACTGACACATCAGCTGGAACTTTAGAATGGGCGATGGCGAATTTGTTGAA 955
Query 979 CCATCCAGAAGTATTACGAAAGGCAAAGACCGAAATCGACGACCAAATCGGTGTAGACCG 1038
|||| | |||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 956 CCATTCGGAAGTACTACGAAAGGCAAAGACCGAAATCGATGACCAAATTGGTGTAGACCG 1015
Query 1039 GTT-AGTAGAGGAACAAGACATTGTGAAACTTCCTTACCTTCAGCACATTGTGTCAGAGA 1097
||| | ||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 1016 GTTGA-TAGAGGAACAAGACATTGTGAAACTTCCTTATCTTCGGAACATTGTGTCAGAGA 1074
Query 1098 CTTTACGGCTTTATCCGGTGGCTCCAATGCTTTTACCCCACTTAGCATCAGAAGATTGTA 1157
|| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1075 CTATGCGACTTTATCCGGTGGCTCCAATGCTTCTACCCCACTTAGCATCAGAAGATTGTA 1134
Query 1158 TAGTTGATGGCTATGACGTTCCACGCGGCACAATCATCTTGGTGAATGCATGGGCCATCC 1217
| || | ||||||||| || || || ||||||||||| ||||| |||||||||||||| |
Sbjct 1135 TGGTGGCTGGCTATGATGTCCCGCGTGGCACAATCATATTGGTAAATGCATGGGCCATTC 1194
Query 1218 ATAGAGATCCAAAGTTATGGGAAGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAAAA 1277
|||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 1195 ATAGAGATCCAAAGTTGTGGGAAGAGCCAGAAAAGTTTAGGCCAGAGAGGTTTGAGAAAG 1254
Query 1278 AAGGAGAGGATAAAAAGTTGATGCCATTTGGGATTGGACGACGATCTTGCCCTGGTTCAG 1337
|||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||
Sbjct 1255 AAGGGGAGGATAAAAAGTTGATATCATTTGGGATCGGACGACGATCTTGCCCTGGATCAG 1314
Query 1338 GGCTAGCTCAACGGCTAGTGACTTTGGCTCTTGGATCATTGGTCCAATGTTTTGAGTGGG 1397
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1315 GGCTAGCTCAACGGCTAGTGACCTTAGCTCTTGGATCGTTGGTCCAATGTTTTGAGTGGG 1374
Query 1398 AGAGGGTTGAAGAAAAGTATCTAGACATGAGAGAAAGTGAAAAAGGAACCACAATGCGAA 1457
|||| || | |||||||||| ||||||||||||||||||||| ||||||||| ||||| |
Sbjct 1375 AGAGAGTCGGAGAAAAGTATGTAGACATGAGAGAAAGTGAAAGAGGAACCACGATGCGCA 1434
Query 1458 AAGCTACATCGTTGCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTTTTAGATG 1517
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1435 AAGCTACATCGTTGCAAGCTATGTGTAAAACTCGTCCCATTGTCCATAAGGTTTTGGATG 1494
Query 1518 CTTCTTGTCCATAACTTTCATCATACAGA 1546
|||||||||||||||| ||||||||||||
Sbjct 1495 CTTCTTGTCCATAACTCTCATCATACAGA 1523
> Ahg899629 jgi|Araly1|899629|Al_scaffold_0004_279
Length=1560
Score = 643 bits (348), Expect = 0.0
Identities = 1171/1555 (75%), Gaps = 109/1555 (7%)
Strand=Plus/Plus
Query 21 TAATGGAAACT-ATATACCTAAttctctctctcttcttcttcttcatcttcctatctctc 79
||||||||||| || | ||||||| | |||||| ||||||||| | ||| | |||||
Sbjct 59 TAATGGAAACTCAT-TTCCTAATTTTATCTCTCGCCTTCTTCTT--T-TTCATTTCTCTT 114
Query 80 aaactcttGTTCGG-ACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAG-TCGAC 137
||||| ||||| || | | ||| || | |||||||| || ||||| || | | |
Sbjct 115 AAACTTTTGTTTGGTA-AAAGGCATAACAAGTTTAACCTACCACCAAGTCC-AGCTAGGC 172
Query 138 CATTTCCGA-TCATCGGACACCTCCACCTTCTAAAGCTA-CCACTCCACCGTAGATTtct 195
|| |||| | | || |||||||| ||||| |||||| | || || ||||||| ||| ||
Sbjct 173 CACTTCC-ATTTATTGGACACCTTCACCTCCTAAAG-AAGCCGCTTCACCGTACATTCCT 230
Query 196 ctctctctcAGAATCTTTAAACAACGCCAAGATTTTCTCTC-TCAGCCTCGG-CTCTCGT 253
|||| |||| |||| || |||| ||||||||| | || ||||||| | |||
Sbjct 231 CTCTTTCTCTCAATCCCTAGGTGGCGCCCCGATTTTCTC-CATCCGCCTCGGAAAC-CGT 288
Query 254 CT-AGTTTTTGTTGT-TTCTTCTCACGCCGTCGCGGAAGAATG-TTTCACTAAGAACGAC 310
|| | ||||||| | || || || || |||| |||||||| ||| || || ||||||
Sbjct 289 CTCA-CGGTTGTTGTCTCCTCCT-ACTCCATCGCTGAAGAATGCTTT-ACAAAAAACGAC 345
Query 311 GTCGTGTTAGCTAACCGGCCGGAGTTTC--TCGTCGGGAAACATATAGGGTACAAC-TCT 367
| || || || || |||| || ||| || ||||||||||||| | ||||||| ||
Sbjct 346 ATTGTTTTGGCCAATAGGCCAAAG-TTCATTC-TCGGGAAACATATTGAGTACAACTTC- 402
Query 368 ACGACCATGGTTGGTGCGGCTTATGGAGA-TAGTTGGAGGAATCTTCGACGTATTGGCAC 426
|| || ||| ||||| ||||||| || || ||| | || || || ||||| || ||
Sbjct 403 ACCACTATGACAAGTGCGCCTTATGGTGACTA-CTGGCGAAACCTGCGCCGTATCGGTAC 461
Query 427 CATTGAGATCTTCTCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAA-GATGAGA 485
| | ||||| || || || | | ||| ||| |||| ||||||||||| || |||||||
Sbjct 462 CCTCGAGATATTTTCTTCACACAAGCTCAATGGCTTTTTATCTATCCGT-AAGGATGAGA 520
Query 486 TCCGACGGCTCATAATTTG-T-CTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGA 543
|||||| || | | ||| | ||| | |||||||| ||||||||||||| ||| |||||
Sbjct 521 TCCGAC-ACTTGTTA-TTGCTCCTATCAAAAAACTCGCAACATGGGTTTGCGAAGGTGGA 578
Query 544 GATGAAACCATTG-TTTATGTGTTTAACTATCAACAACA-TCATTAGAATGGTGGCCGGA 601
||||| || |||| |||||| ||| ||||||||||||| || || ||||| | |||||
Sbjct 579 GATGAGACAATTGTTTTATG-ATTTGACTATCAACAACATTC-TTCGAATGATAGCCGGG 636
Query 602 AAAAGAT-TCTACGGTGATGGAACAGAG-AACGACAACGAGGCTAAAC-ACGTGAGACAG 658
||| ||| | || || || ||||||||| || || ||| || | | ||||| |||
Sbjct 637 AAACGATAT-TATGGAGAGGGAACAGAGCAA-GATGACGTTGCGCGGCGA-GTGAGCCAG 693
Query 659 CTAATTGCCGAGGTAGTTGT-TAGCGGC-GGCGCAGGGAACGCAGCAGACTACTTCCCTA 716
| |||| |||| | ||| | || ||| ||||| ||||| ||||| || || || || |
Sbjct 694 TTGATTGACGAGATTGTT-TACAG-GGCTGGCGCTGGGAATGCAGCCGATTATTTACCGA 751
Query 717 TCCTT-CGTTACG-TAACGA-ACTATGAGAAACATGTTAAGAAGTTAGCAG-GTCGTGTT 772
| || |||| | | || | | | ||||||| || ||| ||||||| | |||| |||
Sbjct 752 T-TTTGCGTT-GGATTAC-AGATTTTGAGAAAGGGGTCAAGGAGTTAGC-GAGTCGAGTT 807
Query 773 GATGAGTTTTTGCAAAGTCTAGTTAACGAGAAACGTGTGGAGAAAGTAAAA-GGTAACAC 831
|||||||||||||| ||||| || | |||||||||||||| |||| |||| ||||||||
Sbjct 808 GATGAGTTTTTGCAGAGTCTGGTCGATGAGAAACGTGTGGATAAAG-AAAAGGGTAACAC 866
Query 832 AATGATCGATCATTTAC-TTTCTCTACAAGAAACTCAGCCTGATTACTACACGGATGTGA 890
||||| ||||| |||| |||| || ||||| ||||||||||||||||| || ||||| |
Sbjct 867 TATGATGGATCACTTACTTTTC-CTCCAAGAGACTCAGCCTGATTACTATACAGATGTCA 925
Query 891 -TCATCAAAGGAATCATACTTGTTATGATACTTGCCGGGACTGATACATCAGCTGGAACG 949
|| | |||||||||||| ||||||||||||||||||||||||| |||| ||| |||||
Sbjct 926 CTC-TTAAAGGAATCATAATTGTTATGATACTTGCCGGGACTGAAACATTAGCAGGAACT 984
Query 950 TTAGAATGGGCGATGTC-GAATTTGTTGAACCATCCAGAAGTATTACGA-AAGGCAAAGA 1007
||||||||||||||| | ||||||||||||||||||||||||| || || || || | ||
Sbjct 985 TTAGAATGGGCGATG-CTGAATTTGTTGAACCATCCAGAAGTACTA-GAGAAAGCGAGGA 1042
Query 1008 CCGAAATCGACGACC-AAATCGGTGTAGACCGGTTAGTAGAGGAA-CAAGACATTGTGAA 1065
|||||||||| ||| |||||||| | ||||||||| |||| ||| | || | | ||
Sbjct 1043 CCGAAATCGA-TACCAAAATCGGTTTTGACCGGTTAATAGATGAAGC-CGATACT-AAAA 1099
Query 1066 A-CTTCCTTACCTTCAGCACATTGTGTCAGAGACTTTACGGCTTTATCCGGTGGCTCCAA 1124
| || ||||| || || || |||| ||||| |||| ||| |||| | |||||||
Sbjct 1100 ATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCATCCAGCAGCTCCAA 1159
Query 1125 TGCTTTTACCCCACTTA-G-CATCAGAAGATTGTATAGTT-G-ATGGCTATGACGTTCCA 1180
| | |||| || | | ||||| |||||||| ||| | | || || |||||||||
Sbjct 1160 --CAAATGTTCCACATATGACGTCAGATGATTGTAT-GTTGGCA-GGATACGACGTTCCA 1215
Query 1181 CGCGGCACAATCATCTTGGTGAATGCATGGGCCATCCATAGAGATCC-AAAGTTATGGGA 1239
|| || | || | |||||||| ||||||||| |||||||| || || |||||||
Sbjct 1216 CGTGGTTCGATGTTATTGGTGAACATATGGGCCATGCATAGAGACCCGTCAG-TATGGGA 1274
Query 1240 AGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAA--AAAAGGAGAGGATAAAAAGTTG 1297
||| || |||| || ||||| |||||||| || || ||||| | || ||||||||
Sbjct 1275 AGACCCCGAAATGTTCAAGCCAGAGAGGTTCGAAAATCAAAAGCTTA--ATCAAAAGTTG 1332
Query 1298 ATGCCATTTGGGATTGGACGACGATCTTGCCCT--GGTTCAGGGCTAGCTCAACGGCTAG 1355
|| | ||||||||||||||| || |||| ||| |||| || |||||||| ||| ||
Sbjct 1333 TTGTCGTTTGGGATTGGACGAAGAGCTTGTCCTGGGGTT--GGCCTAGCTCATCGGTTAC 1390
Query 1356 TGA-CTTTGGCTCTTGGATC-ATTGGTCCAATGTTTTGAGTGGGAGAGGGTTGAAGAA-A 1412
||| | |||||||||||||| | |||| || |||||||| ||| |||| ||| |||| |
Sbjct 1391 TGAGC-TTGGCTCTTGGATCGA-TGGTTCAGTGTTTTGAATGGCAGAGAATTGGAGAAGA 1448
Query 1413 AGTATCTAGACATGAGAGAAAGTGAA--AAAGGAACCACAATGCGAAAAGCTACATCGTT 1470
| ||| | |||| ||||| || ||| | || ||| ||||| || ||| | ||
Sbjct 1449 A-TATGTTGACACGAGAG-AA--GAACTTATGG--CCATGATGCGTCCTGCGACACCATT 1502
Query 1471 GCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTT-TTAGATGCTTCTTG 1524
|| ||| |||||||||||||||||||||||||||||| || ||| |||||| |||
Sbjct 1503 GCTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCTTA-ATGCTT-TTG 1555
> Ahg899631 jgi|Araly1|899631|Al_scaffold_0004_281
Length=1545
Score = 553 bits (299), Expect = 2e-156
Identities = 1159/1560 (74%), Gaps = 116/1560 (7%)
Strand=Plus/Plus
Query 21 TAATGGAAACT-ATATACCTAAttctctctctcttcttcttcttcatcttcctatctctc 79
||||||| ||| || | ||||||| | | |||| || ||||||| | ||| | |||||
Sbjct 41 TAATGGAGACTCAT-TTCCTAATT-T-TATCTC-TCATCTTCTTTGTTTTCATTTCTCTT 96
Query 80 aaactcttGTTCGG-ACCACGGCCGCGTAAACTAAACCTACCGCCGAGTCCGAG-TCGAC 137
||||| ||||| || | ||||| | || | |||||||| || |||||| | | | |
Sbjct 97 AAACTTTTGTTTGGTA-AACGGCATAGCAAGTTTAACCTACCACCAAGTCCG-GCTTGGC 154
Query 138 CATTTCCGATCATCGGACACCTCCACCTTCTAAAGCTACCACTCCACCGTAGATTtctct 197
| || ||| | || |||||||| ||||| || ||||| || || ||||| | ||| ||||
Sbjct 155 CCTTGCCGTTGATTGGACACCTTCACCTCCTGAAGCTCCCGCTTCACCGCACATTCCTCT 214
Query 198 ctctctcAGAATCTTTAAACAACG-CCAAGATTTTCTCTCTCAGCCTCGG-CTCTCGTCT 255
|| |||| |||| ||| ||| || | |||||||| ||| ||||||| | |||||
Sbjct 215 CTTTCTCTCAATCCTTAGGTGACGCCCCA-ATTTTCTCCCTCCGCCTCGGAAAC-CGTCT 272
Query 256 -AGTTTTTGTTGTTTC-TTCTCACGCCGTCGCGGAAGAATG-TTTCACTAAGAACGACGT 312
| |||| || || | || || || |||| |||||||| ||| || || |||||| |
Sbjct 273 CA-CGGTTGTCGTCTCATCCT-ACTCCATCGCTGAAGAATGCTTT-ACAAAAAACGACAT 329
Query 313 CGTGTTAGCTAACCGGCCGGAGTT--TCTCGTCGGGAAACATATAGGGTACAACTCTACG 370
|| || || || |||| ||||| | || ||||||||||||| | ||||||||| ||
Sbjct 330 TGTTTTCGCCAATAGGCCAGAGTTGAT-TC-TCGGGAAACATATTGAGTACAACTCCACC 387
Query 371 ACCATGGTTGGTGCGGCTTATGGAGA-TAGTTGGAGGAATCTT-CGACGTATTGGCACCA 428
|| ||| | ||||| |||| || || | ||| ||| ||| || ||||| | ||||
Sbjct 388 ACTATGACTAGTGCGCCTTACGGTGACCA-CTGG-CGAAACTTGCGCCGTATCGCCACC- 444
Query 429 TT-GAGATCTTCTCGTCTCTTAGGCTTAATAGCTTCGTATCTATCCGTCAA-GATGAGAT 486
|| ||||||||| |||| | || |||||| ||||| ||| | ||||| || ||||||||
Sbjct 445 TTGGAGATCTTCGCGTCACATAAGCTTAACGGCTTCTTATATGTCCGT-AAGGATGAGAT 503
Query 487 CCGACGGC-TCATAATTTGTCTAGCGAAAAACTCTCAACATGGGTTTGTGAAAGTGGAGA 545
||||| | | || | |||| | |||||||| | ||||| ||||| |||||||||||
Sbjct 504 CCGAC-ACTTGTTACTACGTCTCTCCAAAAACTCGCGACATGAGTTTGCGAAAGTGGAGA 562
Query 546 TGAAACCA-TTG-TTTATGTGTTTAACTATCAACAACATCATTAGAATGGTGGCCGGAAA 603
||| | || ||| ||| || | || |||||||||||| | |||||||||| || || ||
Sbjct 563 TGAGA-CATTTGCTTTTTGAG-TTGACTATCAACAACGTTTTTAGAATGGTAGCGGGGAA 620
Query 604 AAGATTCTACGGTGATGGAACAGAG-AACGAC-AACGAGGCTAAACACGTGAGACAGCTA 661
| |||| || ||||| || |||||| || ||| || | || | || |||||||||||
Sbjct 621 ACGATTTTATGGTGAGGGCACAGAGCAA-GACGAA-GTTGCGCAGCAAGTGAGACAGCTG 678
Query 662 ATTGCCGAGGTAGTTGTTAGC-G-GC-GGCGCAGGGAACGCAGCAGACTACTTCCCTATC 718
|| | ||| | | |||| | | | || ||||| ||||| ||||| ||||| || || |||
Sbjct 679 ATGGACGA-G-A-TTGTAACCAGCGCTGGCGCCGGGAATGCAGCCGACTATTTACCAATC 735
Query 719 CTTCGTTACG-TAACGA-ACTATGAGAAACATGTTAAGAAGTTAGCAG-GTCGTG-TTGA 774
| |||| | | || | | | |||||||| || ||||||||||| | ||| | | ||
Sbjct 736 ATGCGTT-GGATCAC-AGATTTTGAGAAACGCGTCAAGAAGTTAGC-GATTCG-GATCGA 791
Query 775 TGAGTTTTTGCAAAGTCTAGTTAACGAGAAACGTG-TGGAGAAAGTAAAA-GGTAACACA 832
| |||||||||| |||||||| | |||||||||| | || |||| |||| |||| ||||
Sbjct 792 TAAGTTTTTGCAGAGTCTAGTGGATGAGAAACGTGCT-GATAAAG-AAAAGGGTACCACA 849
Query 833 ATGATCGATCATTTACTTTCTCTACAAGAAACTCAGCCTGATTACTACACGGATGTGA-T 891
||||| ||||| || |||||||| |||| ||||||||||||||| || || ||||| | |
Sbjct 850 ATGATAGATCACTTGCTTTCTCTCCAAGCAACTCAGCCTGATTATTATACAGATGTCATT 909
Query 892 CATCAAAGGAATCATACTTGTTATGATACTTGCCGGGA-CTGATAC-ATCAGC-TGGAAC 948
| | |||||| ||||| ||||||||||| ||| | ||| |||| || || || ||| ||
Sbjct 910 C-TTAAAGGACTCATAGTTGTTATGATAATTG-CTGGATCTGAAACAAT-TGCATGG-AC 965
Query 949 GTTAGAATGGGCGATGTCGAATTTGTTGAACCATCCAGAAGTATT-ACGAAAGGCAAAGA 1007
|||||||||||||||| |||||||||||||||||||||||| || | |||| || | ||
Sbjct 966 TTTAGAATGGGCGATGTTGAATTTGTTGAACCATCCAGAAGTGTTAAAGAAA-GCTAGGA 1024
Query 1008 CCGAAATCG--ACGACCAAATCGGTGTAGACCGGTTAG-TAGAGGAA-CAAGACATTGTG 1063
||||||||| |||| |||||||| | |||||||| | | || ||| | || | |
Sbjct 1025 CCGAAATCGATACGA--AAATCGGTTTTGACCGGTT-GATTGATGAAGC-GGATACT-AA 1079
Query 1064 AAA-CTTCCTTACCTTCAGCACATTGTGTCAGAGACTTTACGGCTTTATCCGGTGGCTCC 1122
||| || ||||| || || || |||| ||||| |||| ||| | |||| |||||
Sbjct 1080 AAATCTCCCTTATCTCCAATGGATAGTGTTGGAGACCCTACGTCTTCACCCGGCAGCTCC 1139
Query 1123 AATGCTTTTACCCCACTTA-G-CATCAGAAGATTGTATAGTT-G-ATGGCTATGACGTTC 1178
|| | | |||| || | | ||||| ||||| || ||| | | || || ||| |||
Sbjct 1140 AA--CAAATGTTCCACATATGACGTCAGAGGATTGCAT-GTTGGCA-GGATACGACATTC 1195
Query 1179 CACGCGGCA-CAATCATCTTGGTGAATGCATGGGCCATCCATAGAGATCCAAAGT-TATG 1236
|||| || | | || | |||||||| ||||||||| |||||||| || | ||||
Sbjct 1196 CACGTGG-ATCGATGTTATTGGTGAACATATGGGCCATGCATAGAGA-CCCGTCTATATG 1253
Query 1237 GGAAGAGCCAGAAAAATTTAAGCCGGAGAGGTTTGAGAAAAAAGGAGAGGATAA--A-AA 1293
|||||| ||||||| || ||||| |||||| || ||||| | | || ||| | ||
Sbjct 1254 GGAAGACCCAGAAATGTTCAAGCCAGAGAGG-TT--CAAAAATGAAAAGCTTAATCATAA 1310
Query 1294 GTTGATGCCATTTGGGATTGGACGACGATCTTG-CCCTGGTTCA-GGGCTAGCTCAACGG 1351
|||| || | |||||||||||||||||| | || ||| || | || |||||||| |||
Sbjct 1311 GTTGTTGTCGTTTGGGATTGGACGACGAGCCTGTCCC-GG-GAATGGCCTAGCTCATCGG 1368
Query 1352 CTAGTGA-CTTTGGCTCTTGGATC-ATTGGTCCAATGTTTTGAGTGGGAGAGGGTTGAAG 1409
|||||| | |||||||||||||| | |||| || ||||| || ||| |||| ||| ||
Sbjct 1369 GTAGTGAGC-TTGGCTCTTGGATCGA-TGGTTCAGTGTTTCGAATGGCAGAGAATTGGAG 1426
Query 1410 AA-AAGTATCTAGAC-ATGAGAGAAAG-TGAAAAAGGAACCACAATGCGAAAAGCT-ACA 1465
|| || ||| | ||| || | || ||| ||||| | | ||||| | | |||
Sbjct 1427 AAGAA-TATGTTGACAAT-AAAG-AAGATGAAACTGTTGTCTTGATGCGTCCTG-TGACA 1482
Query 1466 TCGTTGCAAGCTATGTGTAAAGCTCGTCCCATTGTCCATAAGGTTT-TAGATGCTTCTTG 1524
||||| ||| |||||||||||||||||||||||||||||| || | ||||||| |||
Sbjct 1483 CCGTTGTTAGCCATGTGTAAAGCTCGTCCCATTGTCCATAAGATTCGT-GATGCTT-TTG 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5