BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28750.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484650 jgi|Araly1|484650|fgenesh2_kg.5__642__AT3G28750.1 1594 0.0
> Ahg484650 jgi|Araly1|484650|fgenesh2_kg.5__642__AT3G28750.1
Length=1289
Score = 1594 bits (863), Expect = 0.0
Identities = 1167/1303 (90%), Gaps = 63/1303 (5%)
Strand=Plus/Plus
Query 1 ACTTCCTTCATTTTCCTTTCTAGTTTTATATTTCAAGTTCttttttttttAACCTTGCCA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ACTTCCTTCATTTTCCTTTCTAGTTTTATATTTCAAGTT-TTTTTTTTTTAACCTTGCCA 59
Query 61 TCAATACAACCATGGCAAGGATTTCTCTGTTGTTCTCTTTAGCCTTAGTTCTAGCCATCG 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 TCAATACAACCATGGCAAGGATCTCTCTGTTGTTCTCTTTAGCCTTAGTTCTAGCCATCG 119
Query 121 GGTCCGTCTTGGCTCACCCACCTACCCACAAGAAATTACAAAAGACCTTGTGTCCATCTA 180
|||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 120 GGTCTGTCTTGGCTCACCCACCTACCGACAAGAAAATACAAAAGACCTTGTGTCCATCTA 179
Query 181 CTTTGTCCAAAGTTCAAGCTTTCCCTTAC-CTTGAAGTCTCTAGCTTCGTCGAGAAGAAG 239
||||| ||||||| ||||| ||||||||| | |||| |||||| ||||||| ||||||||
Sbjct 180 CTTTGGCCAAAGTCCAAGCCTTCCCTTACAC-TGAAATCTCTAACTTCGTCCAGAAGAAG 238
Query 240 GTTCAGTTCGCACCAAAAACCATTGCGTTCAAGTCTTTGTTCTCCATCTGCAAGAGCTAC 299
||||| |||||||||||||||||||| |||||| |||||||| || |||||||| |||||
Sbjct 239 GTTCAATTCGCACCAAAAACCATTGCATTCAAGACTTTGTTCGCCGTCTGCAAGGGCTAC 298
Query 300 ATCGACTTTCTTGGGGGCGTTAAGTTTTCTGCCTCCAGAGATGTGTTTCACGTCGTTCAT 359
| ||| |||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 299 ACCGAATTTCTTGGGGCCTTTAAGTTTTCTGGCTCCAAAGATGTGTTTCACGTCGTTCAT 358
Query 360 GTCAAATTCACTTTGATGACCAAGGCGATGGTTATTGCACAAGCACACATTGGAGTTGAA 419
||||||||| |||||||||||| |||||||||| |||||||||||| ||||| ||||||
Sbjct 359 GTCAAATTCGCTTTGATGACCAGGGCGATGGTTGCTGCACAAGCACATATTGGTGTTGAA 418
Query 420 GGAGACCTCGCTGTTAAGTTGGGCAAAAGCTACACCGTGATGGCTGAAAGGTTTGTCAAC 479
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 419 GGAGACCTTGCTGTTAAGTTGGGAAAAAGCTACACCGTGATGGCTGAAAGGTTTGTTAAG 478
Query 480 CTTTTGGAGATGATGTCTACGGTCTCGGCCAAGTATAAGTTCGATGCTAATGCTAAGATA 539
||| |||||| |||| || |||||||||| |||||||||||| ||||||||||| |||||
Sbjct 479 CTTGTGGAGAAGATGGCTGCGGTCTCGGCAAAGTATAAGTTCAATGCTAATGCTGAGATA 538
Query 540 AGCGCT-AGTGAGAGTGCTGAGATTGAAAAATGTGTGATG-AAGTTGAAGAGTGCCATTA 597
|||| | |||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 539 AGCG-TGAGTGAGAGGGCTGAGATTGAAAAATGTGTGA-GTAAGTTGAAGAGTGCCATTA 596
Query 598 GGTCTTACGTGAAGGTGATCTCTCAGTGCAGCACGAAATTCTCTGCTGGAAAGAGTATTG 657
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 597 GGTCTTACGTGAAGGTGATCTCTCAGTGCAGCACGAAATTCTCTGCTGGGAAGAATATTG 656
Query 658 GTTTCCCCACTTACCCCGTTGGTTTCATTGGAGGTATAGCTAAACAAGGTCTCGGATATG 717
|||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 657 GTTTTCCCACTTACCCCGGCGGTTTCCTCGGAGGTATAGCTAAACAAGGTCTCGGATATG 716
Query 718 CGGGTAAATTTGTTGGAGCTCATGGCCAAGTTGGAGCCGGA-TTCGAAATCGGAGCTAAA 776
| | |||||| ||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 717 CCGATAAATTGGTTGGAGCTCACGGCCAAGTTGGAGCCGGAGTT-GAAATCGGAGCTAAA 775
Query 777 GCTAAGGTTGGAG-T--T-C-A--G--A-G-T-G-A----AAA-ATTCTTGGAGTACGGA 818
||||||||||||| | | | | | | | | | | ||| ||||||| ||||||||
Sbjct 776 GCTAAGGTTGGAGCTCATGCCAAAGGCAAGGTTGGAGTTGAAAGATTCTTGAAGTACGGA 835
Query 819 CCAATAACTAAACCCAAAGGTAAGGTTGGAGTTCAAGGTGAAGTTAAAGTCGGAGGTCAG 878
|||||| | |||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 836 CCAATAGTTCAACCCAAAGGCAAGGTTGGAGTTCAAAGTGAAGCTAAAGTCGGAGGTCAG 895
Query 879 GTCCATGCCGCGGGTAAGGCTAAGGTTAGAGCTCA----A--G------TTG-A----A- 920
|| |||||||||||| |||||||||| ||||||| | | ||| | |
Sbjct 896 TTCGATGCCGCGGGTAGGGCTAAGGTTGGAGCTCATGTCAAAGGCAAGGTTGGAGCTCAA 955
Query 921 G------CTAAAGTCGGAGGTGA-AACCGGCAGTGGATATTATGATGGAATC-ATGAAGT 972
| |||||||||||||| | ||| || || | ||||| || ||| || | |||||
Sbjct 956 GGTGAAGCTAAAGTCGGAGGTAATAAC-GG-AG-G-ATATTGGGAAGGATTCCA-GAAGT 1010
Query 973 ACTTTGGAAAAGGTCACTTCGATGCCGCGGGTAAGGCGCATGTCAGTGGAGGAAGCGGAT 1032
|||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1011 ACTTAGGAAAAGGTCAGTTCGATGCCGCGGGTAAGGCGCATGTCGGTGGAGGAAGCGGAT 1070
Query 1033 TCAGGCCATTGAGCAACCCTCACAAGAAGCACTTAGATTGAACAAAGGGCACAAGTTTAT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCAGGCCATTGAGCAACCCTCACAAGAAGCACTTAGATTGAACAAAGGGCACAAGTTTAT 1130
Query 1093 ACAACAGATGAAGGAGCCATGAGTTCATCTCTTATTTTTATTTTTACTATTATATGAAGG 1152
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1131 ACAACAGATGAAGGAGTCATGAGTTCATCTCTTATTTTTATTTTTAATATTATATGAAGG 1190
Query 1153 AGGGAAACGCCATGCGATATTAATCTCTATTTGTAACCATTTTAAAAACAAA-CTATATT 1211
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1191 AGGGAAACGCCATGCGATATTAATCTCTATTTGTAACCATTTTAAAAA-AAATCGATATT 1249
Query 1212 TGTAACTCATCATTAATATAATATCGCATGTTTTCTTAATTAC 1254
|||||||||| | |||||||||||||||||||||||||||||
Sbjct 1250 TGTAACTCAT--T-AATATAATATCGCATGTTTTCTTAATTAC 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5