BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28760.2
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322953 jgi|Araly1|322953|fgenesh1_pm.C_scaffold_5000497 1731 0.0
> Ahg322953 jgi|Araly1|322953|fgenesh1_pm.C_scaffold_5000497
Length=1281
Score = 1731 bits (937), Expect = 0.0
Identities = 1121/1208 (93%), Gaps = 20/1208 (2%)
Strand=Plus/Plus
Query 144 AGAAAGATTAGAACTTGATAGATTACTATTGTGGAGCTCTCATCAGAAG--------A-T 194
||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
Sbjct 78 AGAAAGATTAGAACTTGATAGATTACTGTTGTGGAGCTCTCATAAGAAGAATCATAAATT 137
Query 195 -A--AGATTTAGTAAAAGAACGTTTTCTCAGAGAA-TTGTTGTGAAAATGTCTGCTTCAA 250
| |||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 138 GATTAGATTTAGTAAAAGAACGTTTTCTCAGA-AACTTGCTGTGAAAATGTCTGCTTCAA 196
Query 251 CTTTGCCTATGAATCTTGGCAAAGCAAAGAAGGTTTGGATATGGACT-ATGTGCAAAGAA 309
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 197 CTTTGCCTATGAATCTTGGCAAAGCAAAGAAGGTTTGGATATGGACTGA-GTGCAAAGAG 255
Query 310 GTCATGACCGTTGCGGTGGAACGAGGCTGGAACACATTTATATTCTCATCGGATAATCGA 369
| |||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 256 GCCATGACAGTCGCGGTGGAACGAGGATGGAACACATTTATATTCTCATCGGACAATCGA 315
Query 370 AAACTATCCAATGAGTGGTCATCTATTGCATTGATGGATACATTGTTTATTGAAGAGAAG 429
|||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 316 GAACTATCCGATGAGTGGTCATCGATTGCGTTGATGGATACATTGTTTATTGAAGAGAAG 375
Query 430 AAAGTTATTGATGGTACGGGGAACGTTGTAGCTTCGGTCTTTGAGGTTTCAACACCCGAG 489
||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 376 CAAGTTGTTGATGGTACGGGGAATGTTGTTGCTTCGGTCTTTGAGGTTTCAACACCCGAG 435
Query 490 GAGCTTCGGAGTTTGAATATCGAAAACGAGCAGATAGAGAATATTGTTCTTGATTTCTTA 549
||||| |||| |||||| |||||||| || ||| || |||||||||||||||||||||
Sbjct 436 GAGCTACGGAATTTGAAGATCGAAAATGAACAGGCGGAAAATATTGTTCTTGATTTCTTA 495
Query 550 GACTGGAAGTCAATCCCAGCGGAAAATCTAGTGGCGGCTCTTCAAGGAAGTGAGAAAACA 609
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GACTGGAAGTCAATCCCGGCGGAAAATCTAGTGGCGGCTCTTCAAGGAAGTGAGAAAACA 555
Query 610 GTATTTG-CAGTTTCAAATACTCCCTCAGAGGCTAAACTATTCCTAGAGGCTTTAGAGCA 668
||||||| || ||||||||| |||||| || || ||||||||||| ||||||||||||||
Sbjct 556 GTATTTGCCA-TTTCAAATAATCCCTCGGAAGCAAAACTATTCCTCGAGGCTTTAGAGCA 614
Query 669 TGGTCTCGGTGGAATCATTCTTAAATCCGAGGATGTTAAAGCTGTTCTTGATCTAAAGGA 728
||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 615 TGGACTTGGCGGAATCATTCTTAAGTCTGAGGATGTTAAAGCTGTTCTTGATCTAAAGGA 674
Query 729 ATACTTTGACAAGAGAAACGAAGAAAGTGATACATTAAGCTTAACGGAAGCTACTATAAC 788
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 675 ATACTTTGACAAGAGAAACGAAGAAAGTGATACATTAAGTTTGACGGAAGCTACTATAAC 734
Query 789 TCGGGTTCAAATGGTCGGTATGGGAGACCGAGTCTGTGTTGATCTTTGTAGCCTAATGAG 848
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 735 TCGGGTTCAAATGGTCGGTATGGGAGACCGAGTCTGTGTTGATCTTTGCAGCCTCATGAG 794
Query 849 ACCCGGTGAAGGTCTTCTTGTTGGATCTTTTGCTAGAGGACTCTTCTTGGTTCACTCAGA 908
||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 795 ACCCGGTGAAGGTCTTCTTGTTGGATCTTTTGCGAGAGGACTATTCTTAGTCCACTCAGA 854
Query 909 ATGCTTGGAGTCTAATTACATTGAAAGCAGACCATTTAGAGTTAACGCTGGGCCGGTGCA 968
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 855 ATGCTTGGAGTCTAATTACATCGAAAGCAGACCATTTAGAGTTAACGCTGGGCCGGTGCA 914
Query 969 CGCTTATGTCGCTGTACCAGGTGGAAAGACGTGTTACCTCTCGGAGTTAAGGACGGGAAG 1028
|||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 915 CGCTTATGTCGCAGTTCCAGGTGGAAAGACTTGTTACCTCTCGGAGTTAAGGACAGGAAG 974
Query 1029 AGAGGTAATTGTTGTTGATCAGAAAGGAAAACAGCGGACAGCAGTCGTTGGGCGAGTGAA 1088
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 975 AGAGGTAATCGTTGTTGATCAGAAAGGAAAACAGCGGACAGCAGTCGTTGGGCGAGTTAA 1034
Query 1089 AATAGAGAAGCGTCCACTTATTGTTGTGGAGGCTAAGCTTAGCACAAAGGAGGAGGAAAC 1148
||| ||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 1035 AATCGAGAAGCGTCCACATATTCTTGTGGAGGTTAAGCTTAGCGCAAAGGAGGAGGAAAC 1094
Query 1149 AGTGTATAGTATCATCTTGCAGAACGCAGAAACAGTTGCATTAGTCACTCCTCATCAAGT 1208
|| | ||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 GGTTTTTAGCATTATCCTGCAGAACGCAGAAACAGTTGCATTAGTCACTCCTCATCAAGT 1154
Query 1209 AAACTCATCAGGAC-GAACCGCTGTTCCCGTGACCTCGCTGAAACCCGGGGATCAAGTTT 1267
||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1155 AAACTCATCTGG-CAAAACCGCTGTTCCCGTGACCTCTCTGAAACCCGGGGATCAAGTTT 1213
Query 1268 TGATCAGATTACAGGGCGGTGCACGCCATACCGGTATAGAGATTCAGGAATTCATTGTCG 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGATCAGATTACAGGGCGGTGCACGCCATACCGGTATAGAGATTCAGGAATTCATTGTCG 1273
Query 1328 AGAACTGA 1335
|||| |||
Sbjct 1274 AGAATTGA 1281
Score = 139 bits (75), Expect = 5e-32
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTGCCTTTGGTCTCCTCTGTTTCTTACATCAAATCCTCAAACCAATTCCATTGT 60
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCTTTGTCTTTGGTCTCCTCTGTTTCTTACATCAAATCCTCATACCAATTCCATTGT 60
Query 61 TCTTTCTCTCTGAGAAAAGAAAAATTTGAGCTT 93
| |||||||||||||||||||| ||| || |||
Sbjct 61 TGTTTCTCTCTGAGAAAAGAAAGATTAGAACTT 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5