BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28780.1
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936671 jgi|Araly1|936671|scaffold_500862.1 1369 0.0
> Ahg936671 jgi|Araly1|936671|scaffold_500862.1
Length=2056
Score = 1369 bits (741), Expect = 0.0
Identities = 1409/1713 (82%), Gaps = 120/1713 (7%)
Strand=Plus/Plus
Query 71 TTACATATCTGAC-AAAACAATGGCTAGATTTCCTATAGCAATATGTCTAATGTTAATAC 129
||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 TTACATATCTGACAAAAAAAATGGCTAAATTTCCTATAGCGGTATGTCTAATGTTAATAC 60
Query 130 TAGTAGCATCAAGTACCATATATGAAGCGCAAGGTGTATTCTTATTAAGGCATTACATGA 189
|||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 61 TAGTAGCATCAAGTACCATATATGAAGCACAAGCTGGGTTCTTATTAAGGCATTACATGA 120
Query 190 ATAAATTTCCTAAAAATTCCCAAGACTTTGAGCCTTTTGCTTACAAAGGTATGCTTAGTT 249
| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 121 AGAAATTTCCTCAAAATTCCCAAGATTTTGAGCCTTTTGCTTACAAGGGTATGCTTAGTT 180
Query 250 TTGTGGATAACCTTGAGAA-TATGGCTCC-GGAAAAAGGAGAGTACAAGGATTTCTTCTC 307
||||||| |||||||| || ||||||||| || |||||||||||||||||||||||||||
Sbjct 181 TTGTGGACAACCTTGA-AAGTATGGCTCCAGG-AAAAGGAGAGTACAAGGATTTCTTCTC 238
Query 308 AAAGCTGAAAGCTTTCATGTCCTTCATAAACACGGCAAAAGGGTCGTCTTCAGAGTTCCA 367
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 239 AAAGCTGAAAGCTTTCATGGGCTTCATAAACACGGCAAAAGGGTCTTCTTCAGACTTCCA 298
Query 368 GTCTCAAATGAAACAACAAGCTGAGGGCCTCTTCAAGGCTATCTCTGCATTGGGTGTCAA 427
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 GTCTCAGATGAAACAACAATCTGAGGGCCTCTTCAAGGCTATCTCTGCATTGGGTATCAA 358
Query 428 AGGAGGATCATCGGCTGATACGAGCAAATTGATCGAGAGTTTGATGTCAATGGGGAAAAC 487
|||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 359 AGGAGGATCATCAGCTGATACAAGCAAACTGATCGAGAGTTTGATGTCAATGGGAAAAAC 418
Query 488 ATTTGCTGAATTTAAGAGGAGCGGTGCAACAATGATGACAAGTGAACAAAGAAGAGAGTT 547
|||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |
Sbjct 419 TTTTGCTGAATTTAAGAGGAGTGGTGCAACAACGATGACAAGCGAACAAAGAAGAGAGCT 478
Query 548 AGTTACATCTATGGCAAAATGGGCACAAGTGATTGGTCAATTTGTGAAAAAAGTTGGCGA 607
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 GGTCACATCTATGGCAAAATGGGCACAAGTGATTGGTCAGTTTGTGAAAAAAGTTGGCGA 538
Query 608 TCAGAATGGTGACGGCGCAAAGATTGATCTGTCATCACTTCTTGGAGGTGGAAGCTCTGG 667
|||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 539 CCAGACTGGTGACGGCAAAAATATTGATCTTTCATCACTTCTTGGAGGTGGAAGCTCTGG 598
Query 668 CCTTGGAAGCAGTGGTGATAGTGGAAGTCCAGGCTCTGACAGCGGTTCTCCCTCCGCCGA 727
| |||| ||| |||||||||| ||||||||| |||||||||| ||||| ||||| |||||
Sbjct 599 CTTTGGTAGCGGTGGTGATAGCGGAAGTCCAAGCTCTGACAGTGGTTCCCCCTCTGCCGA 658
Query 728 CACTGGGAGTCCTACGGACGGTGGAAGCTATGGAGACACCACTGGTGATAGTGGAAGTTC 787
|||||||||||||| |||||||||||||||||||| | ||| ||||||| |||||| ||
Sbjct 659 TACTGGGAGTCCTACCGACGGTGGAAGCTATGGAGATAGCACAGGTGATACTGGAAGCTC 718
Query 788 GGCAGGTAGTCCATCATATCCAAGTGATGATGGTAGTGGAAGCACTGCTGGTGGCCCTAG 847
|||| |||| || || ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 719 GGCAAGTAGCCCCTCCTATCCAAGTGATGGTGGCAGTGGAAGCACTGCTGGTGGCCCTAG 778
Query 848 TGGAAGTACAACTGATG--G----TTCTGCCGGAGGAGAAAGTTCAATGGGTGGTGATTC 901
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 779 TGGAAGTACAACTGATGATGGCAGTTCCGCCGGAGGAGAAAGTTCAATGGGTGGTGATTC 838
Query 902 CTCTTCTGCTG--G----AGCAGCTGGGGAGAGTGGAAGTGCAGCA-ACTGCCGATAGTG 954
||||||||||| | |||||||||||||| || ||||||| | | |||||||||||
Sbjct 839 CTCTTCTGCTGTAGGTGGAGCAGCTGGGGAGACTGCAAGTGCAACTGA-TGCCGATAGTG 897
Query 955 GAGATGCTGCTGGTGCCGA---T---AGTGGAggtgctgctggtg-c-cga-t-agtgga 1004
||| ||||||||||| || | ||||| || ||| |||||| | || | |
Sbjct 898 GAGGTGCTGCTGGTGGTGAAGCTGCTAGTGGTGGAGCTTCTGGTGGCTCGGCTGAAACC- 956
Query 1005 ggtgctgctagtgcc-gatagtggaggtgctgctgctgg-tgAAACCG---CTAGTGGTG 1059
||||||| || || | | |||||| |||| ||| ||| | | | | || ||||||
Sbjct 957 GGTGCTGAAAGCGCAAG-TGGTGGAGATGCTTCTGGTGGCTCAG-CTGAAACTGGTGGTG 1014
Query 1060 GA-GCTGCTGCCGCTG-A-CA-CTTCTGGTGGTTCGGCTGAAACCGGTGGTGAAAGTGCT 1115
| || |||| | || | | | |||||||| | |||||||||||||||||||||| |
Sbjct 1015 AAAGC-GCTGGTGGTGGAGCTGCATCTGGTGGCGCAGCTGAAACCGGTGGTGAAAGTGGT 1073
Query 1116 --AG-T------GGTGGA--G-CTG---CT--T-CTG---GTGCTGGAGCTGCTTCCGGT 1154
|| | ||||| | ||| | | ||| ||| ||||||||||||||||
Sbjct 1074 GGAGCTACTACCGGTGGTTCGGCTGAAACCGGTGCTGAAAGTGGTGGAGCTGCTTCCGGT 1133
Query 1155 GCCTCAGCTAAAACCGGTGGTGAAAGTGGTGAAGCTGCTTCTGGTGGTTCAGCTGAAACT 1214
| ||||||| ||||||||| ||||||||||| ||||||||| ||||| || |||||| |
Sbjct 1134 GGCTCAGCTGAAACCGGTGATGAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAGCC 1193
Query 1215 GGTGGTGAAAGTGCTAGTGCTGGAGCTGCTTCCGGTGGTTCGGCTGAAACTGGTGGTGAA 1274
|||| |||||||| ||| | |||| |||||||||||||||||||||| |||| ||||
Sbjct 1194 GGTGCTGAAAGTG---GTG--G-AGCTACTTCCGGTGGTTCGGCTGAAACCGGTGCTGAA 1247
Query 1275 AGCGGT--AG-TGGT---GGAG-CT-G-C--AT-CCGGTGGTGAAAGCGCTAGTGGTGGA 1322
|| ||| || || | || | || | | | |||| ||||||| ||||||||||||
Sbjct 1248 AGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAATGCTAGTGGTGGA 1307
Query 1323 GCTA-CATCCGGTGGCTCACCTGAAACCGGTG-GCTCAGC--TGAAACCGGT---GGTGA 1375
|| | | ||||||||||| |||||||||||| | || || | | | | ||||
Sbjct 1308 GC-AGCTTCCGGTGGCTCGGCTGAAACCGGTGCGGAAAGTGGTGGAGCTGCTTCCGGTG- 1365
Query 1376 AAGCGCTAGTGGTGGAGCTGCATCCGGTGGAGAAAGTGCTAGTGGTGGAGCTGCTTCCAG 1435
| |||||||||||||| || || ||||| | ||| | | | | |||| ||
Sbjct 1366 --GTGCTAGTGGTGGAGCGGCTTCTGGTGGCTC--G-GCT-GAAGCCG-G-TGCTGAAAG 1417
Query 1436 TGGCTCG-GTTGAAAGTGGTGGTGAAAGCACTGGAGCTACTTCCGGTGGCTCAGCTGAAA 1494
||| | | | || ||||||| || ||| ||| | |||||||| || |||||||
Sbjct 1418 TGG-TGGAGCTGCTTCCGGTGGTGCTAGTGGTGGTGCTGCATCCGGTGGTTCGGCTGAAA 1476
Query 1495 CCAGTGATGAAAGCGCTAGTGGTGGAGCTGCATCCGGTGGTGAGAGTGCTAGTGGTGGAG 1554
|| ||| |||||| | | | ||||||||| |||||||||| ||||||||||||
Sbjct 1477 CCGGTGCTGAAAG---T-G-G-TGGAGCTGCTTCCGGTGGTG------CTAGTGGTGGAG 1524
Query 1555 CTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAGCACTAGCAGTGGAGTTGCTTCTG 1614
| || ||||||||||||||||||||||| ||||||||| |||| |||||| |||||| |
Sbjct 1525 CCGCATCCGGTGGCTCGGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCG 1584
Query 1615 GTGGCTC-----AA-CTGGTAGTGAAAGTGCTAGTG-CTGGAGCTGCTTCCGGTGGCTCG 1667
||||||| || | || ||||||||||||||| | ||||||||||| |||||||||
Sbjct 1585 GTGGCTCGGCTGAAACCGGCGGTGAAAGTGCTAGTGGC-GGAGCTGCTTCTGGTGGCTCG 1643
Query 1668 ACTGAGGCCAATGGTGGAGCCGCTGCCGGAGGC 1700
||||| || ||||||||| ||||| || |||
Sbjct 1644 ACTGAAACCGGTGGTGGAGCTGCTGCTGGTGGC 1676
Score = 425 bits (230), Expect = 6e-118
Identities = 261/276 (95%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 1860 AGTGGAGGAACCTACACAGATTCTACAGGTGGAAGTCCAACCGGTAGTCCC-TCTGCGGG 1918
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||
Sbjct 1782 AGTGGAGGAACCTACACAGATTCTACAGGTGGAAGTCCAGCCGGTAG-CCCTTCTGCCGG 1840
Query 1919 TGGCCCAAGTGGAAGTGCAAGTGAAAGCTCGATGGAAGGTGGAACTTTCGGAGGCCAATC 1978
|||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||
Sbjct 1841 TGGCCCAAGTGGAAGTGCAACTGAAAGCTCGATGGAAGGTGGAGCCTCCGGAGGCCAATC 1900
Query 1979 TATGGGAGGACAAGCCGGCAGTGCTAGCTATCAATCTACCAACTATCAAAAGACACACTC 2038
||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 1901 TATGGGAGGACAAGCCGGCAGTGTTAGCTATCAATCTGCCAACTATCAAAAGACGCACTC 1960
Query 2039 AAAATCCGCAGGCAAAAGCTCCGTCAGCCATTCCTCGGAAGAGAAAAGCTCCGACAGCGC 2098
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1961 AAAATCCGCAGGCAAAAGCTCTTTCAGCCATTCCTCGGAAGAGAAAAGCTCTGGCAGCGC 2020
Query 2099 CAATGCGGACTCGTAGATTTAGACCCAGAGGTCAAA 2134
||||||||||||||||||||||||||||||||||||
Sbjct 2021 CAATGCGGACTCGTAGATTTAGACCCAGAGGTCAAA 2056
Score = 263 bits (142), Expect = 5e-69
Identities = 403/519 (78%), Gaps = 57/519 (11%)
Strand=Plus/Plus
Query 1135 GTGCTGGAGCTGCTTCCGGTGCCTCAGCTAAAACCGGTGGTGAAAGTGGTGAAGCTGCTT 1194
||| ||||||||||||||||| ||| ||| || |||||| ||||||||||| |||| |||
Sbjct 1159 GTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAGCCGGTGCTGAAAGTGGTGGAGCTACTT 1218
Query 1195 CTGGTGGTTCAGCTGAAACTGGTGGTGAAAGTGCTAGTGCTGGAGCTGCTTCCGGTGGTT 1254
| |||||||| |||||||| |||| ||||| | | | | |||||||||||||||||| |
Sbjct 1219 CCGGTGGTTCGGCTGAAACCGGTGCTGAAA--G-T-G-G-TGGAGCTGCTTCCGGTGGCT 1272
Query 1255 CGGCTGAAACTGGTGGTGAAAGCGGTAGTGGTGGAGCTGCATCC---GG-T-GG-TGAAA 1308
|||||||||| || ||||||| | |||||||||||| || ||| || | || |||||
Sbjct 1273 CGGCTGAAACCGGCGGTGAAAATGCTAGTGGTGGAGCAGCTTCCGGTGGCTCGGCTGAAA 1332
Query 1309 -----GC-GCTAGTGGTGGAGCTACATCCGGT-G-GCTCA--CCT-GA--AAC--C-GGT 1352
|| | |||||||||||| | |||||| | ||| | | || | | |||
Sbjct 1333 CCGGTGCGGAAAGTGGTGGAGCTGCTTCCGGTGGTGCT-AGTGGTGGAGCGGCTTCTGGT 1391
Query 1353 GGCTCAGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCATCCGGTGGAGAAAGT 1412
||||| |||||| |||||| || || |||||||||||||| |||||| | ||
Sbjct 1392 GGCTCGGCTGAAGCCGGTGCTG-AA-----AGTGGTGGAGCTGCTTCCGGT---G---GT 1439
Query 1413 GCTAGTGGTGGAGCTGCTTCCAGTGGCTCGGTTGAAAGTGGTGGTGAAAGCACTGGAGCT 1472
||||||||||| ||||| ||| |||| |||| ||||| |||| |||||| |||||||
Sbjct 1440 GCTAGTGGTGGTGCTGCATCCGGTGGTTCGGCTGAAACCGGTGCTGAAAGTGGTGGAGCT 1499
Query 1473 ACTTCCGGTGGCTCAGCTGAAACCAGTGATGAAAG-CGC-T--AGTGG-TGGAGCTGCAT 1527
|||||||||| | ||| |||| || || ||| | |||| | | |||| |
Sbjct 1500 GCTTCCGGTGG-T--GCT------AGTGGTG-GAGCCGCATCCGGTGGCTCG-GCTGAAA 1548
Query 1528 CCGGTGGTGAGAGTGCTAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTG 1587
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTG 1608
Query 1588 AAAGCACTAGCAGTGGAGTTGCTTCTGGTGGCTCAACTG 1626
|||| |||| | |||| ||||||||||||||| ||||
Sbjct 1609 AAAGTGCTAGTGGCGGAGCTGCTTCTGGTGGCTCGACTG 1647
Score = 198 bits (107), Expect = 1e-49
Identities = 404/536 (75%), Gaps = 66/536 (12%)
Strand=Plus/Plus
Query 1213 CTGGTGGTGAAAG-TGCTAGTGCTGGAGCTGCTTCCGGTGGTTCGGCTGAAACTGGTGGT 1271
||||||||| ||| |||||||| |||| ||||| ||||| ||||||||||| |||| |
Sbjct 907 CTGGTGGTG-AAGCTGCTAGTGGTGGA---GCTTCTGGTGGCTCGGCTGAAACCGGTGCT 962
Query 1272 GAAAGCGGTAGTGGTGGAGCTGCATCCGGTGGTGAAAGC-GCTAGTGGTGGAGCTACATC 1330
||||||| |||||||||| ||| || ||||| ||| | | |||||| | | | |
Sbjct 963 GAAAGCGCAAGTGGTGGAGATGCTTCTGGTGG-CTCAGCTGAAACTGGTGGTG--AAAGC 1019
Query 1331 -C-GGTGGCT-CACCTGAAACCGGTGGCTCAGCTGAAACCGGTGGTGAAAGCGCTAGTGG 1387
| ||||| | | ||| | | |||||| |||||||||||||||||| || |||||
Sbjct 1020 GCTGGTGG-TGGAGCTGCATCTGGTGGCGCAGCTGAAACCGGTGGTG-AA-----AGTGG 1072
Query 1388 TGGAGCTGCAT-CC---GG-T-GG-AGAAA---GTGCT---AGTGGTGGAGCTGCTTCCA 1434
||||||| | | || || | || |||| ||||| ||||||||||||||||||
Sbjct 1073 TGGAGCTAC-TACCGGTGGTTCGGCTGAAACCGGTGCTGAAAGTGGTGGAGCTGCTTCCG 1131
Query 1435 GTGGCTCGGTTGAAAGTGGTGGTGAAAGCACTGGAGCTACTTCCGGTGGCTCAGCTGAAA 1494
||||||| | ||||| |||| |||||| ||||||| ||||||||||||| ||||||
Sbjct 1132 GTGGCTCAGCTGAAACCGGTGATGAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAG 1191
Query 1495 CCAGTGATGAAAGCGCTAGTGGTGGAGCTGCATCC---GG-T-GG-TGAGA---GTGCT- 1544
|| ||| || || |||||||||||| | ||| || | || ||| | |||||
Sbjct 1192 CCGGTGCTG-AA-----AGTGGTGGAGCTACTTCCGGTGGTTCGGCTGAAACCGGTGCTG 1245
Query 1545 --AGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAGCACTAGCAGTG 1602
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1246 AAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAATGCTAGTGGTG 1305
Query 1603 GAGTTGCTTCTGGTGGCTCAACTGGTAGTGAAAGTGCT-A--GTGCTGGAGCTGCTTCCG 1659
||| ||||| |||||||| ||| | | |||| | ||| ||||||||||||||
Sbjct 1306 GAGCAGCTTCCGGTGGCTCGGCTGAAACCG---GTGCGGAAAGTGGTGGAGCTGCTTCCG 1362
Query 1660 GTGGCTCGACTGAGGCCAATGGTGGAGCCGCTGCCGGAGGCTCAACTGAAGCCGGT 1715
|||| | | || || ||||||||| ||| | || ||||| |||||||||||
Sbjct 1363 GTGG-T-G-CT-AG-----TGGTGGAGCGGCTTCTGGTGGCTCGGCTGAAGCCGGT 1409
Score = 167 bits (90), Expect = 4e-40
Identities = 313/413 (76%), Gaps = 46/413 (11%)
Strand=Plus/Plus
Query 1280 TAGTGGTGGAGCTGCATCCGGTGGTGAAAGC-GCTAGTGGTGGAGCTACATCCGGTGGCT 1338
|||||| || ||||| | ||||||| |||| ||||||||||||||| || |||||||
Sbjct 893 TAGTGGAGGTGCTGC-T--GGTGGTG-AAGCTGCTAGTGGTGGAGCT---TCTGGTGGCT 945
Query 1339 CACCTGAAACCGGTGGCT--CAGCTGAAACCGGTGGTGAAAGC-GCTAGTGG-TGGAGCT 1394
| ||||||||||| ||| ||| | || ||||| | | || || |||| | ||||
Sbjct 946 CGGCTGAAACCGGT-GCTGAAAGC-GCAAGTGGTGGAG-ATGCTTCTGGTGGCT-CAGCT 1001
Query 1395 GCATCCGGTGGAGAAAGTGCTAGTGGTGGAGCTGCTTCCAGTGGCTCGGTTGAAAGTGGT 1454
| | | ||||| ||||| ||| ||||||||||||| || ||||| | | ||||| |||
Sbjct 1002 GAAACTGGTGGTGAAAGCGCTGGTGGTGGAGCTGCATCTGGTGGCGCAGCTGAAACCGGT 1061
Query 1455 GGTGAAAGCACTGGAGCTACTTCCGGTGGCTCAGCTGAAACCAGTGATGAAAGCGCTAGT 1514
|||||||| |||||||||| ||||||| || ||||||||| ||| || || |||
Sbjct 1062 GGTGAAAGTGGTGGAGCTACTACCGGTGGTTCGGCTGAAACCGGTGCTG-AA-----AGT 1115
Query 1515 GGTGGAGCTGCATCCGGT-G----G-TGAGA---GTGCT---AGTGGTGGAGCTGCTTCC 1562
||||||||||| |||||| | | ||| | ||| | ||||||||||||||||||
Sbjct 1116 GGTGGAGCTGCTTCCGGTGGCTCAGCTGAAACCGGTGATGAAAGTGGTGGAGCTGCTTCC 1175
Query 1563 GGTGGCTCGGCTGAAACCGGCGGTGAAAGCACTAGCAGTGGAGTTGCTTCTGGTGGCTCA 1622
||||||||||||||| |||| | |||||| | | |||||| | |||| ||||| ||
Sbjct 1176 GGTGGCTCGGCTGAAGCCGGTGCTGAAAG---T-G--GTGGAGCTACTTCCGGTGGTTCG 1229
Query 1623 ACTGGTAGTGAAAGTGCT-A--GTGCTGGAGCTGCTTCCGGTGGCTCGACTGA 1672
||| | | ||||| | ||| |||||||||||||||||||||| ||||
Sbjct 1230 GCTGAAACCG---GTGCTGAAAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTGA 1279
Score = 130 bits (70), Expect = 5e-29
Identities = 263/349 (75%), Gaps = 42/349 (12%)
Strand=Plus/Plus
Query 1078 CTTCTGGTGGTTCGGCTGAAACCGGTGGTGAAAGTGCTAGTGGTGGAGCTGCTTCTGGT- 1136
|||| ||||| |||||||||||||| ||||||| ||||||||||||||| ||||| |||
Sbjct 1261 CTTCCGGTGGCTCGGCTGAAACCGGCGGTGAAAATGCTAGTGGTGGAGCAGCTTCCGGTG 1320
Query 1137 GCTGGAGCTGCTTCCGGTGC--------CT-CAGCTAAAACCGGTGGTGAAAGTGGTGAA 1187
||| | |||| ||||||| | |||| ||||||||| ||||||| |
Sbjct 1321 GCTCG-GCTGAAACCGGTGCGGAAAGTGGTGGAGCTGCTTCCGGTGGTGCTAGTGGTGGA 1379
Query 1188 GCTGCTTCTGGTGGTTCAGCTGAAACTGGTGGTGAAAGTGCTAGTGCTGGAGCTGCTTCC 1247
|| ||||||||||| || |||||| | |||| ||||| | | | | |||||||||||||
Sbjct 1380 GCGGCTTCTGGTGGCTCGGCTGAAGCCGGTGCTGAAA--G-T-G-G-TGGAGCTGCTTCC 1433
Query 1248 GGTGGTTCGGCTGA-AACTGGTGGTGAAAGCGGTAGTGGTGGAGCTGCATCCGGTGGTGA 1306
||||| | ||| | ||||| || | |||| | | | | |||| | |||||| ||
Sbjct 1434 GGTGG-T--GCT-AGTGGTGGTGCTGCATCCGGT-G-GTTCG-GCTGAAACCGGTGCTG- 1485
Query 1307 AAGCGCTAGTGGTGGAGCTACATCCGGT-G-GC------T-CA-CCTGAAACCGGTGGCT 1356
|| |||||||||||| | |||||| | || | | || | | |||||||||
Sbjct 1486 AA-----AGTGGTGGAGCTGCTTCCGGTGGTGCTAGTGGTGGAGCC-GCATCCGGTGGCT 1539
Query 1357 CAGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCATCCGGTGG 1405
| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1540 CGGCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCGGTGG 1588
Score = 108 bits (58), Expect = 2e-22
Identities = 147/187 (79%), Gaps = 18/187 (10%)
Strand=Plus/Plus
Query 1168 CCGGTGGTGAAAGTGGTGAAGCTGCTTCTGGTGGTTCAGCTGAAACTGGTGGTGAAAGTG 1227
||||||||| ||||||| ||||| || |||||||| |||||||| |||| ||||| |
Sbjct 1432 CCGGTGGTGCTAGTGGTGGTGCTGCATCCGGTGGTTCGGCTGAAACCGGTGCTGAAA--G 1489
Query 1228 CTAGTGCTGGAGCTGCTTCCGGTGGTTCGGCTGAAACTGGT-G-G-TGAAAGCGGTAGTG 1284
| | | |||||||||||||||||| | ||| | |||| | | | | |||| | |
Sbjct 1490 -T-G-G-TGGAGCTGCTTCCGGTGG-T--GCT---AGTGGTGGAGCCGCATCCGGT-G-G 1537
Query 1285 GTGGAGCTGCATCCGGTGGTGAAAGCGCTAGTGGTGGAGCTACATCCGGTGGCTCACCTG 1344
| | |||| | ||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 1538 CTCG-GCTGAAACCGGTGGTGAAAGCGCTAGTGGTGGAGCTGCTTCCGGTGGCTCGGCTG 1596
Query 1345 AAACCGG 1351
|||||||
Sbjct 1597 AAACCGG 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87912285460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5