BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28790.1
Length=2184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936672 jgi|Araly1|936672|scaffold_500863.1 979 0.0
Ahg484653 jgi|Araly1|484653|fgenesh2_kg.5__645__AT3G28830.1 291 2e-77
Ahg322957 jgi|Araly1|322957|fgenesh1_pm.C_scaffold_5000501 91.6 2e-17
> Ahg936672 jgi|Araly1|936672|scaffold_500863.1
Length=1631
Score = 979 bits (530), Expect = 0.0
Identities = 850/990 (86%), Gaps = 80/990 (8%)
Strand=Plus/Plus
Query 997 CCCACTCCTTCTACGCCCACTCCTTCTACACCTACCCCTTCTACG-CCA-GCC--C--CT 1050
||||| ||||||||||| || |||||||| ||||||||||||||| ||| || | ||
Sbjct 694 CCCACCCCTTCTACGCCTACCCCTTCTACGCCTACCCCTTCTACGCCCACCCCTTCTTCT 753
Query 1051 TCAACTCCTGCTGCTGGCAAAACCTCTG---A-GAAAG-GA-AG---T-G-AG-AGTGCT 1098
||||||||| ||| |||||||||||||| | | ||| || || | | | ||||||
Sbjct 754 TCAACTCCTTCTGGTGGCAAAACCTCTGAAAAGGGAAGTGAGAGTTCTAGTGGAAGTGCT 813
Query 1099 TCGATGAAAAAAGAATCTAATTCTAAGAGTGAAAGTGAAAGTGCTGCTAGCGGAAGTGTT 1158
|| | ||||||||||||||| ||||||||||||||||||| | |||| || |
Sbjct 814 TCAACGAAAAAAGAATCTAAATCTAAGAGTGAAAGTGAAA--G-TGCT-GC--------T 861
Query 1159 TCCAAGACAAAAGAAACCAACAAAGGAAGCTCTGGAGACACTTACAAAGACACTACCGGT 1218
||||||||||||| || | | | | || ||| | |||||||||||||||||||||
Sbjct 862 TCCAAGACAAAAG-AATC--C--A-GCAG---TGGTGGTACTTACAAAGACACTACCGGT 912
Query 1219 ACATCTTCGGGAAGTCCGAGCGGAAGTCCCAGTGGCAGCCCTACTCCCTCAACTTCTACT 1278
|||||||||||||||||||| ||||||||| ||| |||||| ||| |||||||||||||
Sbjct 913 ACATCTTCGGGAAGTCCGAGTGGAAGTCCCTCTGGTAGCCCTTCTCTCTCAACTTCTACT 972
Query 1279 GATGGTAAAGCCTCTTCGAAAGGaagtgcaagtgcaagtgctggagcaagtgc-aa-g-t 1335
||||||||| ||||||| || ||| | ||| |||||| ||||||||||||| || | |
Sbjct 973 GATGGTAAAACCTCTTC--AA--AAG-G-AAGCGCAAGTTCTGGAGCAAGTGCAAATGCT 1026
Query 1336 ---gcaagtgctggtgctagtgcaagtgctgaagaaagtgctgctTCTCAAAAGAAAGAG 1392
||||||||||| || | ||||||||||| ||||| | |||||||||||||||
Sbjct 1027 GAAGCAAGTGCTGGCGCAAATGCAAGTGCTGGAGAAA-----G-TTCTCAAAAGAAAGAA 1080
Query 1393 TCCAACAGCAAAAGTTCATCTAGTAGCTCATCCACCACATCAGTAAAAGAAGTTGAGA-C 1451
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1081 TCCAACAGCAAAAGTTCAACTAGTAGCTCATCCACCACATCAGTGAAAGAAGTTGAGAGC 1140
Query 1452 ACAAACTTCCTCAGAAGTCAATTCTTTCATTTCTAA-CTTGGAGAAGAAGTACACTGGAA 1510
||||||||||||||||||| |||||||||||| || ||| ||||||||||| |||||||
Sbjct 1141 -CAAACTTCCTCAGAAGTCAGTTCTTTCATTTCAAACCTT-GAGAAGAAGTATACTGGAA 1198
Query 1511 ATTCAGAGCTCAAGGTCTTCTTTGA-AAAGCTAAAGACTTCCATGTCTGCTTCCGCAAAG 1569
|| |||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 1199 ATGCAGAACTCAAGGTCTTCTTTGACAAA-CTAAAGACTTCCATGTCTGCTTCCTCAAAG 1257
Query 1570 C-TATCTACCTCAAACGCAAAAGAATTGGTCACCGGGATGAGATCTGCTGCTTCAAAAAT 1628
| || || ||||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1258 CTTA-CTGCCTCAAACGCAAAAGAATTCGTCTCCGGGATGAGATCTGCTGCTTCAAAACT 1316
Query 1629 AGCTGAGGCAATGATGTTCGTGAGTTCAAGGTTTAGCAAATCCGAAGAGACCAAGACCTC 1688
| ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1317 ATCTGAGGCCATGATGTTCGTGCGTTCAAGGTTCAGCAAATCCGAAGAGACCAAGACCTC 1376
Query 1689 CATGGCATCTTGCCAACAAGAAGTGATGCAGAGTCTCAAGGAACTACAAGACATCAACAG 1748
||||| ||||||||||||| |||| ||| |||||||| ||| ||||||||||||||||||
Sbjct 1377 CATGGAATCTTGCCAACAACAAGTAATGAAGAGTCTCCAGGCACTACAAGACATCAACAG 1436
Query 1749 TCAAATCGTGAGTGGCAAGACAGTGACATCAACACAACAGACAGAGCTTAAGCAGACAAT 1808
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCAAATTGTGAGTGGCAAGACAGTGACATCAACACAACAGACAGAGCTTAAGCAGACAAT 1496
Query 1809 CACCAAGTGGGAACAAGTCACAACCCAATTCGTTGAGACGGCTGcttcttcaagttcatc 1868
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1497 CACCAAGTGGGAACAAGTCACAACCCAATTCGTTGAGACTGCTGCTTCTTCAAGTTCATC 1556
Query 1869 ttcatcttcatcttcatcttcgtcttcttcttcCTCTCAGGGAAGTGCAAAGATGGCCAT 1928
||||||||| | | | | | | | | | ||| | || | |||||| |||||||||
Sbjct 1557 TTCATCTTC-T-T-C-T-T-C-T-T-CATCT-C-----AGAGCAGTGCAGGGATGGCCAT 1601
Query 1929 GAAAAACTGAGTACAAAGCCAAAGCTACAT 1958
||||||||||||||||||||||||||||||
Sbjct 1602 GAAAAACTGAGTACAAAGCCAAAGCTACAT 1631
Score = 843 bits (456), Expect = 0.0
Identities = 485/499 (97%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 89 AACTTTTCTTATATATaaaaaaaaTGGCGAAAAATTTACTAGCAATATGTCTGGTGTTTA 148
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACTTTTCTTATATAT--AAAAAATGGCGAAAAATTTACTAGCAATATGTCTGGTGTTTA 58
Query 149 TGGTTGCATCAAGTGTGGTTTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGA 208
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGGTTGCATCAAGTGTGGTCTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGA 118
Query 209 GGAGGAAGTTTCCCAGACGTTGTATCGACTTTGCCCCTTATGCTGGCAAAGGTATGTTGA 268
||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 119 GGAGGAAGTTTCCCAGACGTTGTGTCGACTTTGCCCCTTTTGCTAGCAAAGGTATGTTGA 178
Query 269 TGCTCGTGAGCAACCTTGAAGGTGGATGTCCCGCAACTAGAGAGTTCAAACAATTCTTTT 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGCTCGTGAGCAACCTTGAAGGTGGATGTCCCGCAACTAGAGAGTTCAAACAATTCTTTT 238
Query 329 CAACGTTCAAGTCTTACATGAGCTTTATCAGCTCAGCATCGATATCCGCATCGAAAAACA 388
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 239 CAACGTTCAAGTCTTACATGAGCTTTATCAGCTCGGCATCGATATCCTCATCGAAAAACA 298
Query 389 TCGATGTGGAGATGAATGGGAGATGTGAATTGCTTTCCAAGGCTATGTCTGCATTGACTG 448
| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TTGATGTGGAGATGAATGGGAAATGTGAATTGCTTGCCAAGGCTATGTCTGCATTGACTG 358
Query 449 GAAGCAAAAGCAGCCAATCATCGGAGTTAAAAATGACCATGTTGTCAATGGGAAAGACTT 508
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 GAAGTAAAAGCAGCCAATCATCGGAGTTAAAAATTACCATGTTGTCAATGGGAAAGACTT 418
Query 509 TGGTTGAGCAGAAGAGGCAAGGTTCAAGGATGATGTCATTGAAGCAAAAGAAAGAGTTGG 568
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TGGTTGAGCAGAAGAGGCAAGGTTCAAGGATAATGTCATTGAAGCAAAAGAAAGAGTTGG 478
Query 569 TTGTGGCTATGGTGAAATG 587
|||||||||||||||||||
Sbjct 479 TTGTGGCTATGGTGAAATG 497
Score = 278 bits (150), Expect = 2e-73
Identities = 232/269 (86%), Gaps = 15/269 (6%)
Strand=Plus/Plus
Query 770 GCAAATCCGGAAGTGAATC---AAC---GGCTGGAAGCATCGAAACTAACA-C----C-- 816
||||||||||||||||||| ||| ||||||||| | ||||||||| | | |
Sbjct 497 GCAAATCCGGAAGTGAATCAAAAACTGAGGCTGGAAGTACCGAAACTAAAACCGGTTCTG 556
Query 817 --GGATCAAAAACTGAGGCTGGTAGCAAAAGTTCTTCTTCAGCCAAGACAAAAGAAGTCA 874
|||||||||||||||||||||||| |||||||||||| |||||||| |||||| ||
Sbjct 557 TTGGATCAAAAACTGAGGCTGGTAGCGGAAGTTCTTCTTCGGCCAAGACTAAAGAAACCA 616
Query 875 GCGGTGGAAGTTCTGGTAACACTTACAAAGACACTACTGGTTCATCTTCAGGCGCCAGTC 934
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GCGGTGGAAGTTCTGCTAACACTTACAAAGACACTACTGGTTCATCTTCAGGCGCCAGTC 676
Query 935 CAAGTGGAAGCCCCACGCCCACCCCTTCTACACCTACTCCTTCTACACCCACTCCTTCTA 994
|||||||||| |||||||||||||||||||| ||||| |||||||| || || |||||||
Sbjct 677 CAAGTGGAAGTCCCACGCCCACCCCTTCTACGCCTACCCCTTCTACGCCTACCCCTTCTA 736
Query 995 CACCCACTCCTTCTACGCCCACTCCTTCT 1023
| ||||| |||||| | | |||||||||
Sbjct 737 CGCCCACCCCTTCTTCTTCAACTCCTTCT 765
> Ahg484653 jgi|Araly1|484653|fgenesh2_kg.5__645__AT3G28830.1
Length=1893
Score = 291 bits (157), Expect = 2e-77
Identities = 464/606 (77%), Gaps = 45/606 (7%)
Strand=Plus/Plus
Query 105 aaaaaaaaTGGCGAAAAATTT-ACTAGCAATATGTCTGGTGTTTA-TGGTTGCATCAAGT 162
|||||||||||| || ||||| ||||| ||||||||| || ||| | || |||||||||
Sbjct 56 AAAAAAAATGGC-AAGAATTTCACTAGGGATATGTCTGATG-TTAGTAGTAGCATCAAGT 113
Query 163 GTGGTTTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGAGGAGGAAGTTTCCC 222
||| | ||||||| |||||| || ||||| ||||| |||||||||| || ||| |||||
Sbjct 114 GTGATCTATGAAGCGCAAGGAACGTTCTTATTAAAACTTTACTTGAAGAAGAATTTTCCA 173
Query 223 AGACGTTGTATCGACTTTGCCCCTTAT-GCTGGCAAAGGTATGTTGATGCTCGTGAGC-A 280
||| |||| ||| ||| | |||| | || ||| |||||| ||| | | |||| |
Sbjct 174 AGAAAATGTAACGAGTTTACGCCTT-TCGCCAACAAGGGTATGATGACGTTGGTGA-CTG 231
Query 281 ACCTTGAAGGTGGATGTCCCGCAACTAG-AGAGTTCAA-ACAATTCTTTTCAAC-GTTCA 337
| || |||||| | | |||||| ||| | ||||||||| || ||||||| | || |||||
Sbjct 232 ATCTAGAAGGTAGCTCTCCCGCGACT-GCAGAGTTCAAGAC-ATTCTTTAC-ACAGTTCA 288
Query 338 AGTCTTACATGAGCTTTATCAGCTCAGCATCGATATCCGCATCGA-AAAACA--TCGATG 394
||||||||||| ||| ||| | || | ||| ||| || || | |||| | | ||||
Sbjct 289 AGTCTTACATGTCCTTCATC-G---AG-A-CGACATCTGCCTCAACAAAAAATGTTGATG 342
Query 395 TGGAGATGA-ATGGGAGATGTGAATTGCTTTCCAAGGCTATGTCTGCATTGA---CTGG- 449
||||||| | | |||||| |||| |||||| ||||||||||||| ||||
Sbjct 343 CCGAGATGACA-ACCAAATGTGACGCACTTTTCAAGGCCATGTCTGCATTGAGTGCTGGT 401
Query 450 -AA-GC--AAAAGCAGC-CAATCATCGGAGT-TAAAAATGACCATGTTGTCAATGGGAAA 503
|| || |||| |||| | | | || || | || |||| ||||||| ||||||||
Sbjct 402 AAAGGCGAAAAATCAGCGGAGGC-TGGGGGTATGAAGGCGACCCTGTTGTCTATGGGAAA 460
Query 504 GACTTTGGTTGAGCAGAAGAGGCAAGGTTCAAGGATGATGTCATTGAAGCAAAAGAAAGA 563
|||||||||||||||||||| | || | ||| ||| ||| |||||||||||||||||||
Sbjct 461 GACTTTGGTTGAGCAGAAGAAG-AA--TACAAAGATAATGACATTGAAGCAAAAGAAAGA 517
Query 564 GTTGGTTGTGGCTATGGTGAAATGGACTCGAATGGTTA-TAACATTCGTAAAGA-GTGTC 621
|||||| | ||||||||||||||||| ||||||| || ||||||||||| | | |
Sbjct 518 GTTGGTCATATCTATGGTGAAATGGACTAAAATGGTTGCTA-CATTCGTAAAGTCG-GCC 575
Query 622 GCCGAGAAGAGAGGAAAGTCGATTGATGA-ATCGTCTTACGGTCTTGATGTTGATGTTAA 680
||||||||| ||||||||| || || | | | ||||| ||||||||||| ||||||||
Sbjct 576 TCCGAGAAGAAAGGAAAGTCAATCAAT-ATAGCATCTTATGGTCTTGATGTCGATGTTAA 634
Query 681 TGCCAG 686
|| |||
Sbjct 635 TGACAG 640
> Ahg322957 jgi|Araly1|322957|fgenesh1_pm.C_scaffold_5000501
Length=1332
Score = 91.6 bits (49), Expect = 2e-17
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 1767 GACAGTG-ACATCAACACAACAGACAGAGCTTAAGCAGACAATCACCAAGTGGGAACAAG 1825
|||| || ||| || ||||||| || || ||||||||||||| || |||||||||||||
Sbjct 1182 GACA-TGCACACCAGCACAACAAACTCAGATTAAGCAGACAATTACTAAGTGGGAACAAG 1240
Query 1826 TCACAACCCAATTCGTTGAGACGGCT 1851
|||||||||||||||| ||||| |||
Sbjct 1241 TCACAACCCAATTCGTGGAGACCGCT 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82198748710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5