BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28800.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481664 jgi|Araly1|481664|fgenesh2_kg.4__724__AT2G17460.1 490 9e-138
Ahg473700 jgi|Araly1|473700|fgenesh2_kg.1__3654__AT1G32505.1 484 4e-136
Ahg479985 jgi|Araly1|479985|fgenesh2_kg.3__2686__AT2G17460.1 435 4e-121
Ahg481538 jgi|Araly1|481538|fgenesh2_kg.4__598__AT2G17460.1 429 2e-119
Ahg473336 jgi|Araly1|473336|fgenesh2_kg.1__3290__AT2G17460.1 429 2e-119
Ahg497174 jgi|Araly1|497174|fgenesh2_kg.26__9__AT2G17460.1 424 9e-118
Ahg484914 jgi|Araly1|484914|fgenesh2_kg.5__906__AT2G17460.1 412 2e-114
> Ahg481664 jgi|Araly1|481664|fgenesh2_kg.4__724__AT2G17460.1
Length=909
Score = 490 bits (265), Expect = 9e-138
Identities = 434/510 (85%), Gaps = 33/510 (6%)
Strand=Plus/Minus
Query 174 CAAT-CACATAATTAGTTACTCGATGTCGGGAAAGATGTTAGTGATTATAGATACTAAAC 232
|||| || ||||||||||||| |||| |||||||||||| |||||| ||||| | |||||
Sbjct 909 CAATCCA-ATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAAC 851
Query 233 GCCCTCCTATCTACATTGACAGTCAAGTGGGGTTGGATACGTTCTTTTTGATTCGTGGTC 292
|||||||| | |||||||||| |||| | | | | |||||||||||||||
Sbjct 850 GCCCTCCTGTATACATTGACAATCAA------AT-G--A-G---TTTTTGATTCGTGGTG 804
Query 293 GGTATCCTTCTCTCAACTTGTTTGTCTTTTTCATTACAACCGTCAAGACACTCGGGAATG 352
|| ||||| | ||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 803 GGGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAAT- 745
Query 353 A-TATCTCTAGGACTC-ATGGTGACGATGCTGAAAGTGACCGTGTGTGTGATAATGTTTC 410
| | || ||||||| | ||||||| || | | | |||||||||||| | ||||||
Sbjct 744 ACTGTCCCTAGGAC-CGATGGTGA-GA-G-T-----T-ACCGTGTGTGTGGGAGTGTTTC 695
Query 411 AAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 470
|||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 694 AAATGTAGATGGAAATAATGAGGCTGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 635
Query 471 AGATGAGGATGAA-AAG-G-AGG-GGAACAACGAAGATAGTGATGGGTATGATGATTATC 526
||||||||||||| ||| | ||| ||| |||||||||| ||| |||||||||||||||||
Sbjct 634 AGATGAGGATGAAGAAGAGGAGGAGGA-CAACGAAGATGGTGCTGGGTATGATGATTATC 576
Query 527 AGGGTGACGATGGATCTATGGAGGGAAGTACCCTCGATCCTACTATTGATGGTAGTGAAA 586
||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 575 AGGGTGATGATGGATCTATGGGGGGAAGTACCCTCGATCCTACTATAGACGGTAGTGAAG 516
Query 587 GTAGTGGCGAAGATTATGATTACAATAAGTGGAACGATGTAACTGTAGAAGAATATGAAA 646
| |||||||||||||| |||||||| |||||||||||| ||| | | |||||||||| ||
Sbjct 515 GCAGTGGCGAAGATTACGATTACAACAAGTGGAACGATTTAATTATTGAAGAATATGGAA 456
Query 647 TAGGGAATGTTGAGGAGAACGTCATTCTCA 676
|||| |||||||||||| ||||||||||||
Sbjct 455 TAGGAAATGTTGAGGAGGACGTCATTCTCA 426
Score = 440 bits (238), Expect = 9e-123
Identities = 278/297 (94%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 752 CTGACGGAGATAACTTTTTTCACTT-GGGTGACCGTACACCAGCTGTGACTCCAAGAAGT 810
||| |||||||||| ||| ||| || |||||||||||||||| | |||||||||||| ||
Sbjct 297 CTGGCGGAGATAACATTTCTCA-TTCGGGTGACCGTACACCAACGGTGACTCCAAGACGT 239
Query 811 ATGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAAAGTGTTTTTAAGA 870
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 ACGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAGAGTGTTTTTAAGA 179
Query 871 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAAT-CTTTTTGCTAC 929
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 178 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAATGCTTTT-GCTAC 120
Query 930 AAGCAACCTAGATCATGTCCTATAAGATTGGAGATGGTATGCGTTGATGATACTTGTCCA 989
||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 119 AAGCAACGTAGGTCATGTCCTACAAGATTGGAGATGGTCTGCGTTGATGATACTTGTCCA 60
Query 990 TGACATTTGACTGCTCAAGTCGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 1046
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 59 TGGCATTTGACAGCTCAAGTTGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 3
Score = 84.2 bits (45), Expect = 2e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 789 ACCAGCTGTGACTCCAAGAAGTATGTGTCAACATGGTTTGTACCAATGTACGTACAC 845
|||| | |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 425 ACCAACGGTGACTCCAAGACGTACGTGTCAACATGGTTTGTACCAATGTACGTACAC 369
> Ahg473700 jgi|Araly1|473700|fgenesh2_kg.1__3654__AT1G32505.1
Length=450
Score = 484 bits (262), Expect = 4e-136
Identities = 343/382 (90%), Gaps = 6/382 (2%)
Strand=Plus/Minus
Query 335 TCAAGACACTCGGGAATGAT-ATCTCTAGGACTCATGGTGACGATGCTGAAAGTGACCGT 393
||||| ||||| ||||| || | | |||||||| ||||||||||||||||||||||||||
Sbjct 450 TCAAGGCACTCTGGAATAATGA-CCCTAGGACTGATGGTGACGATGCTGAAAGTGACCGT 392
Query 394 GTGTGTGATAATGTTTCAAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGAC 453
||||||| | || ||||||||| |||| ||||||||||||||||||||| ||| |||||
Sbjct 391 GTGTGTGGGAGTGCTTCAAATGTGGATGCAAATAATGAGGCCGTAGATGAACAACACGAC 332
Query 454 GTTGAAGACGATAAAACAGATGAGGATGAAAAGGAGG-GGAACAACGAAGATAGTGATGG 512
|| |||| |||||||||||||||||||||||||||| ||| || ||||||| |||||||
Sbjct 331 GTACAAGATGATAAAACAGATGAGGATGAAAAGGAGGAGGA-CACCGAAGATGGTGATGG 273
Query 513 GTATGATGATTATCAGGGTGACGATGGATCTATGGAGG-GAAGTACCCTCGATCCTACTA 571
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 272 GTATGATGATTATCAGGGTGACGATGGATCTATGG-GGAGAAGTACCCTCGATCATACTA 214
Query 572 TTGATGGTAGTGAAAGTAGTGGCGAAGATTATGATTACAATAAGTGGAACGATGTAACTG 631
| || | ||||||| |||||||||||||||| |||||||| |||||||||||||||| ||
Sbjct 213 TAGACGATAGTGAATGTAGTGGCGAAGATTACGATTACAACAAGTGGAACGATGTAATTG 154
Query 632 TAGAAGAATATGAAATAGGGAATGTTGAGGAGAACGTCATTCTCACACAACTGACTGTTC 691
|||||||||||| ||||||||||||||||||| ||||||||||||| |||| || ||||
Sbjct 153 TAGAAGAATATGGAATAGGGAATGTTGAGGAGGACGTCATTCTCACTCAACAAACGGTTC 94
Query 692 AACATCTAGGGGAATTCAGTCG 713
|||||| |||||||||||||||
Sbjct 93 AACATCCAGGGGAATTCAGTCG 72
> Ahg479985 jgi|Araly1|479985|fgenesh2_kg.3__2686__AT2G17460.1
Length=904
Score = 435 bits (235), Expect = 4e-121
Identities = 277/297 (93%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 752 CTGACGGAGATAACTTTTTTCACTT-GGGTGACCGTACACCAGCTGTGACTCCAAGAAGT 810
||| |||||||||| ||| ||| || |||||||||||||||| | |||||||||||| ||
Sbjct 297 CTGGCGGAGATAACATTTCTCA-TTCGGGTGACCGTACACCAACGGTGACTCCAAGACGT 239
Query 811 ATGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAAAGTGTTTTTAAGA 870
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 238 ACGTGTCAACATGGTTTGTACCAATGTACGTACACTACAGATTGGAGAGTGTTTTTAAGA 179
Query 871 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAAT-CTTTTTGCTAC 929
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 178 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAATGCTTTT-GCTAC 120
Query 930 AAGCAACCTAGATCATGTCCTATAAGATTGGAGATGGTATGCGTTGATGATACTTGTCCA 989
||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 119 AAGCAACGTAGGTCATGTCCTACAAGATTGGAGATGGTCTGCGTTGATGATACTTGTCCA 60
Query 990 TGACATTTGACTGCTCAAGTCGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 1046
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 59 TGGCATTTGACAGCTCAAGTTGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 3
Score = 274 bits (148), Expect = 1e-72
Identities = 326/403 (81%), Gaps = 47/403 (12%)
Strand=Plus/Minus
Query 174 CAAT-CACATAATTAGTTACTCGATGTCGGGAAAGATGTTAGTGATTATAGATACTAAAC 232
|||| || ||||||||||||| |||| |||||||||||| |||||| ||||| | |||||
Sbjct 904 CAATCCA-ATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAAC 846
Query 233 GCCCTCCTATCTACATTGACAGTCAAGTGGGGTTGGATACGTTCTTTTTGATTCGTGGTC 292
|||||||| | |||||||||| |||| || | ||||| |||||||||
Sbjct 845 GCCCTCCTGTATACATTGACAATCAA----------AT--G--ATTTTTCATTCGTGGTG 800
Query 293 GGTATCCTTCTCTCAACTTGTTTGTCTTTTTCATTACAACCGTCAAGACACTCGGGAATG 352
|| ||||| | ||| |||||||||| || || | | ||| |||||||||||
Sbjct 799 GGGATCCTAGTGTCACCTTGTTTGTC----TC-TTTC-A-----AAG-CACTCGGGAAT- 753
Query 353 A-TATCTCTAGGACTC-ATGGTGACGATGCTGAAAGTGACCGTGTGTGTGATAATGTTTC 410
| | || ||||||| | ||||||| || | | | |||||||||||| | || |||
Sbjct 752 ACTGTCCCTAGGAC-CGATGGTGA-GA-G-T-----T-ACCGTGTGTGTGGGAGTGCTTC 703
Query 411 AAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 470
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 AAATGTAGATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 643
Query 471 AGATGAGGATGAA-AAG-G-AGG-GGAACAACGAAGATAGTGATGGGTATGATGATTATC 526
||||||||||||| ||| | ||| ||| |||||||||| ||| |||||||||||||||||
Sbjct 642 AGATGAGGATGAAGAAGAGGAGGAGGA-CAACGAAGATGGTGCTGGGTATGATGATTATC 584
Query 527 AGGGTGACGATGGATCTATGGAGGG-AAGTACCCTCGATCCTA 568
||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 583 AGGGTGATGATGGATCTATGGGGGGGAAGTACCCTCGATCCTA 541
Score = 106 bits (57), Expect = 4e-22
Identities = 96/113 (85%), Gaps = 9/113 (8%)
Strand=Plus/Minus
Query 732 GTACACAAGTCAGCGTGTACCTGACGGAGATAACTTTTTTCACTTGGGTGACCGTACACC 791
|||||||||||| |||||||||| ||||||||| | | || ||||||||||||
Sbjct 473 GTACACAAGTCATCGTGTACCTGGGGGAGATAAC-----T--C--GGTTGACCGTACACC 423
Query 792 AGCTGTGACTCCAAGAAGTATGTGTCAACATGGTTTGTACCAATGTACGTACA 844
| | |||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 422 AACGGTGACTCCAAGACGTACGTGTCAACATGGTTTGTACCAATGTACGTACA 370
> Ahg481538 jgi|Araly1|481538|fgenesh2_kg.4__598__AT2G17460.1
Length=829
Score = 429 bits (232), Expect = 2e-119
Identities = 276/297 (93%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 752 CTGACGGAGATAACTTTTTTCACTT-GGGTGACCGTACACCAGCTGTGACTCCAAGAAGT 810
||| |||||||||| ||| ||| || |||||||||||||||| | |||||||||||| ||
Sbjct 297 CTGGCGGAGATAACATTTCTCA-TTCGGGTGACCGTACACCAACGGTGACTCCAAGACGT 239
Query 811 ATGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAAAGTGTTTTTAAGA 870
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 238 ACGTGTCAACATGGTTTGTACCAATGTACGTACACTACAGATTGGAGAGTGTTTTTAAGA 179
Query 871 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAAT-CTTTTTGCTAC 929
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 178 ACAGAAAAGTCATACAACAAATAATGTCTTATCTCGCAATCAAACAATGC-TTTTGCTAC 120
Query 930 AAGCAACCTAGATCATGTCCTATAAGATTGGAGATGGTATGCGTTGATGATACTTGTCCA 989
||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 119 AAGCAACGTAGGTCATGTCCTAAAAGATTGGAGATGGTCTGCGTTGATGATACTTGTCCA 60
Query 990 TGACATTTGACTGCTCAAGTCGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 1046
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 59 TGGCATTTGACAGCTCAAGTTGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 3
Score = 279 bits (151), Expect = 2e-74
Identities = 324/399 (81%), Gaps = 46/399 (12%)
Strand=Plus/Minus
Query 174 CAAT-CACATAATTAGTTACTCGATGTCGGGAAAGATGTTAGTGATTATAGATACTAAAC 232
|||| || ||||||||||||| |||| |||||||||||| |||||| ||||| | |||||
Sbjct 829 CAATCCA-ATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAAC 771
Query 233 GCCCTCCTATCTACATTGACAGTCAAGTGGGGTTGGATACGTTCTTTTTGATTCGTGGTC 292
|||||||| | |||||||||| |||| || | |||||||||||||||
Sbjct 770 GCCCTCCTGTATACATTGACAATCAA----------AT--G--ATTTTTGATTCGTGGTG 725
Query 293 GGTATCCTTCTCTCAACTTGTTTGTCTTTTTCATTACAACCGTCAAGACACTCGGGAATG 352
|| ||||| | ||| |||||||||| || || ||||| |||||||||||
Sbjct 724 GGGATCCTAGTGTCACCTTGTTTGTC----TC-TT-------TCAAGGCACTCGGGAAT- 678
Query 353 A-TATCTCTAGGACTC-ATGGTGACGATGCTGAAAGTGACCGTGTGTGTGATAATGTTTC 410
| | || ||||||| | ||||||| || | | | |||||||||||| | || |||
Sbjct 677 ACTGTCCCTAGGAC-CGATGGTGA-GA-G-T-----T-ACCGTGTGTGTGGGAGTGCTTC 628
Query 411 AAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 470
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AAATGTAGATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 568
Query 471 AGATGAGGATGAA-AAG-G-AGG-GGAACAACGAAGATAGTGATGGGTATGATGATTATC 526
||||||||||||| ||| | ||| |||| ||||||||| ||| |||||||||||||||||
Sbjct 567 AGATGAGGATGAAGAAGAGGAGGAGGAA-AACGAAGATGGTGCTGGGTATGATGATTATC 509
Query 527 AGGGTGACGATGGATCTATGGAGGGAAGTACCCTCGATC 565
||||||| ||||||||||||| |||||||||||||||||
Sbjct 508 AGGGTGATGATGGATCTATGGGGGGAAGTACCCTCGATC 470
Score = 102 bits (55), Expect = 5e-21
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 773 ACTTGGGTGACCGTACACCAGCTGTGACTCCAAGAAGTATGTGTCAACATGGTTTGTACC 832
||| || ||||||||||||| | |||||||||||| ||| ||||||||||||||||||||
Sbjct 441 ACTCGGTTGACCGTACACCAACGGTGACTCCAAGACGTACGTGTCAACATGGTTTGTACC 382
Query 833 AATGTACGTACAC 845
|||||||||||||
Sbjct 381 AATGTACGTACAC 369
> Ahg473336 jgi|Araly1|473336|fgenesh2_kg.1__3290__AT2G17460.1
Length=829
Score = 429 bits (232), Expect = 2e-119
Identities = 276/297 (93%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 752 CTGACGGAGATAACTTTTTTCACTT-GGGTGACCGTACACCAGCTGTGACTCCAAGAAGT 810
||| |||||||||| ||| ||| || |||||||||||||||| | |||||||||||| ||
Sbjct 297 CTGGCGGAGATAACATTTCTCA-TTCGGGTGACCGTACACCAACGGTGACTCCAAGACGT 239
Query 811 ATGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAAAGTGTTTTTAAGA 870
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 238 ACGTGTCAACATGGTTTGTACCAATGTACGTACACTACAGATTGGAGAGTGTTTTTAAGA 179
Query 871 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAAT-CTTTTTGCTAC 929
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 178 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAATGCTTTT-GCTAC 120
Query 930 AAGCAACCTAGATCATGTCCTATAAGATTGGAGATGGTATGCGTTGATGATACTTGTCCA 989
||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 119 AAGCAACGTAGGTCATGTCCTAAAAGATTGGAGATGGTCTGCGTTGATGATACTTGTCCA 60
Query 990 TGACATTTGACTGCTCAAGTCGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 1046
|| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 59 TGGCATTTGACAGCTCAAGTTGTCAAGAATTCAGAATATTTCAAAATCACATCGTAT 3
Score = 274 bits (148), Expect = 1e-72
Identities = 323/399 (81%), Gaps = 46/399 (12%)
Strand=Plus/Minus
Query 174 CAAT-CACATAATTAGTTACTCGATGTCGGGAAAGATGTTAGTGATTATAGATACTAAAC 232
|||| || ||||||||||||| |||| |||||||||||| |||||| ||||| | |||||
Sbjct 829 CAATCCA-ATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAAC 771
Query 233 GCCCTCCTATCTACATTGACAGTCAAGTGGGGTTGGATACGTTCTTTTTGATTCGTGGTC 292
|||||||| | |||||||||| |||| || | |||||||||||||||
Sbjct 770 GCCCTCCTGTATACATTGACAATCAA----------AT--G--ATTTTTGATTCGTGGTG 725
Query 293 GGTATCCTTCTCTCAACTTGTTTGTCTTTTTCATTACAACCGTCAAGACACTCGGGAATG 352
|| ||||| | ||| |||||||||| || || ||||| |||||||||||
Sbjct 724 GGGATCCTAGTGTCACCTTGTTTGTC----TC-TT-------TCAAGGCACTCGGGAAT- 678
Query 353 A-TATCTCTAGGACTC-ATGGTGACGATGCTGAAAGTGACCGTGTGTGTGATAATGTTTC 410
| | || ||||||| | ||||||| || | | | |||||||||||| | || |||
Sbjct 677 ACTGTCCCTAGGAC-CGATGGTGA-GA-G-T-----T-ACCGTGTGTGTGGGAGTGCTTC 628
Query 411 AAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 470
|||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 627 AAATGTAGATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGATGATAAAAC 568
Query 471 AGATGAGGATGAA-AAG-G-AGG-GGAACAACGAAGATAGTGATGGGTATGATGATTATC 526
||||||||||||| ||| | ||| |||| ||||||||| ||| |||||||||||||||||
Sbjct 567 AGATGAGGATGAAGAAGAGGAGGAGGAA-AACGAAGATGGTGCTGGGTATGATGATTATC 509
Query 527 AGGGTGACGATGGATCTATGGAGGGAAGTACCCTCGATC 565
||||||| ||||||||||||| |||||||||||||||||
Sbjct 508 AGGGTGATGATGGATCTATGGGGGGAAGTACCCTCGATC 470
Score = 102 bits (55), Expect = 5e-21
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 773 ACTTGGGTGACCGTACACCAGCTGTGACTCCAAGAAGTATGTGTCAACATGGTTTGTACC 832
||| || ||||||||||||| | |||||||||||| ||| ||||||||||||||||||||
Sbjct 441 ACTCGGTTGACCGTACACCAACGGTGACTCCAAGACGTACGTGTCAACATGGTTTGTACC 382
Query 833 AATGTACGTACAC 845
|||||||||||||
Sbjct 381 AATGTACGTACAC 369
> Ahg497174 jgi|Araly1|497174|fgenesh2_kg.26__9__AT2G17460.1
Length=842
Score = 424 bits (229), Expect = 9e-118
Identities = 275/297 (93%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 752 CTGACGGAGATAACTTTTTTCACTT-GGGTGACCGTACACCAGCTGTGACTCCAAGAAGT 810
||| |||||||||| ||| ||| || |||||||||||||||| | |||||||||||| ||
Sbjct 297 CTGGCGGAGATAACATTTCTCA-TTCGGGTGACCGTACACCAACGGTGACTCCAAGACGT 239
Query 811 ATGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAAAGTGTTTTTAAGA 870
| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 238 ACGTGTCAACATGGTTTGTACCAATGTACATACACTACAGATTGGAGAGTGTTTTTAAGA 179
Query 871 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAAT-CTTTTTGCTAC 929
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 178 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAATGCTTTT-GCTAC 120
Query 930 AAGCAACCTAGATCATGTCCTATAAGATTGGAGATGGTATGCGTTGATGATACTTGTCCA 989
||||||| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 119 AAGCAACATAGGTCATGTCCTACAAGATTGGAGATGGTCTGCGTTGATGATACTTGTCCA 60
Query 990 TGACATTTGACTGCTCAAGTCGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 1046
|| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 59 TGGCATTTGACAGCTCAAGTTGTCAACAATTCAGAATGTTTCAAAATCACATCGTAT 3
Score = 351 bits (190), Expect = 4e-96
Identities = 335/399 (84%), Gaps = 33/399 (8%)
Strand=Plus/Minus
Query 174 CAAT-CACATAATTAGTTACTCGATGTCGGGAAAGATGTTAGTGATTATAGATACTAAAC 232
|||| || ||||||||||||| |||| |||||||||||| |||||| ||||| | ||||
Sbjct 842 CAATCCA-ATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAAT 784
Query 233 GCCCTCCTATCTACATTGACAGTCAAGTGGGGTTGGATACGTTCTTTTTGATTCGTGGTC 292
|||||||| | |||||||||| |||| | | | | |||||||||||||||
Sbjct 783 GCCCTCCTGTATACATTGACAATCAA------AT-G--A-G---TTTTTGATTCGTGGTG 737
Query 293 GGTATCCTTCTCTCAACTTGTTTGTCTTTTTCATTACAACCGTCAAGACACTCGGGAATG 352
|| ||||| | ||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 736 GGGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAAT- 678
Query 353 A-TATCTCTAGGACTC-ATGGTGACGATGCTGAAAGTGACCGTGTGTGTGATAATGTTTC 410
| | || ||||||| | ||||||| || | | | |||||||||||| | || |||
Sbjct 677 ACTGTCCCTAGGAC-CGATGGTGA-GA-G-T-----T-ACCGTGTGTGTGGGAGTGCTTC 628
Query 411 AAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 470
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AAATGTAGATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAAC 568
Query 471 AGATGAGGATGAA-AAG-G-AGG-GGAACAACGAAGATAGTGATGGGTATGATGATTATC 526
||||||||||||| ||| | ||| ||| |||||||||| ||| |||||||||||||||||
Sbjct 567 AGATGAGGATGAAGAAGAGGAGGAGGA-CAACGAAGATGGTGCTGGGTATGATGATTATC 509
Query 527 AGGGTGACGATGGATCTATGGAGGGAAGTACCCTCGATC 565
||||||| ||||||||||||| |||||||||||||||||
Sbjct 508 AGGGTGATGATGGATCTATGGGGGGAAGTACCCTCGATC 470
Score = 100 bits (54), Expect = 2e-20
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 773 ACTTGGGTGACCGTACACCAGCTGTGACTCCAAGAAGTATGTGTCAACATGGTTTGTACC 832
||| || ||||||||||||| | |||||||||||| ||| ||||||||||||||||||||
Sbjct 441 ACTCGGTTGACCGTACACCAACGGTGACTCCAAGACGTACGTGTCAACATGGTTTGTACC 382
Query 833 AATGTACGTACA 844
||||||||||||
Sbjct 381 AATGTACGTACA 370
> Ahg484914 jgi|Araly1|484914|fgenesh2_kg.5__906__AT2G17460.1
Length=878
Score = 412 bits (223), Expect = 2e-114
Identities = 273/297 (92%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 752 CTGACGGAGATAACTTTTTTCACTT-GGGTGACCGTACACCAGCTGTGACTCCAAGAAGT 810
||| |||||||||| ||| ||| || |||||||||||||||| | |||||||||||| ||
Sbjct 297 CTGGCGGAGATAACATTTCTCA-TTCGGGTGACCGTACACCAACCGTGACTCCAAGACGT 239
Query 811 ATGTGTCAACATGGTTTGTACCAATGTACGTACACTATAGATTGGAAAGTGTTTTTAAGA 870
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 238 ACGTGTCAACATGGTTTGTACCAATGTACGTACACTACAGATTGGAGAGTGTTTTTAAGA 179
Query 871 ACAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAAT-CTTTTTGCTAC 929
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 178 GCAGAAAAGTCATACAACAAACAATGTCTTATCTCGCAATCAAACAATGCTTTT-GCTAC 120
Query 930 AAGCAACCTAGATCATGTCCTATAAGATTGGAGATGGTATGCGTTGATGATACTTGTCCA 989
||||||| ||| |||||||||| ||||||||||||||| ||||||||||||| || ||||
Sbjct 119 AAGCAACGTAGGTCATGTCCTACAAGATTGGAGATGGTCTGCGTTGATGATATTTTTCCA 60
Query 990 TGACATTTGACTGCTCAAGTCGTCAAGAATTCAGAATGTTTCAAAATCACATCGTAT 1046
|| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 59 TGGCATTTGACAGCTCAAGTTGTCAAGAATTCATAATGTTTCAAAATCACATCGTAT 3
Score = 357 bits (193), Expect = 9e-98
Identities = 337/400 (84%), Gaps = 35/400 (9%)
Strand=Plus/Minus
Query 174 CAAT-CACATAATTAGTTACTCGATGTCGGGAAAGATGTTAGTGATTATAGATACTAAAC 232
|||| || ||||||||||||| |||| |||||||||||| |||||| ||||| | |||||
Sbjct 878 CAATCCA-ATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAAC 820
Query 233 GCCCTCCTATCTACATTGACAGTCAAGTGGGGTTGGATACGTTCTTTTTGATTCGTGGTC 292
|||||||| |||||||||||| |||| | | | | |||||||||||||||
Sbjct 819 GCCCTCCTGTCTACATTGACAATCAA------AT-G--A-G---TTTTTGATTCGTGGTG 773
Query 293 GGTATCCTTCTCTCAACTTGTTTGTCTTTTTCATTACAACCGTCAAGACACTCGGGAATG 352
|| ||||| | ||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 772 GGGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAAT- 714
Query 353 A-TATCTCTAGGACTC-ATGGTGACGATGCTGAAAGTGACCGTGTGTG-TGATAATGTTT 409
| | || ||||||| | ||||||| || | | | |||||||||| || | || ||
Sbjct 713 ACTGTCCCTAGGAC-CGATGGTGA-GA-G-T-----T-ACCGTGTGTGTTG-GAGTGCTT 665
Query 410 CAAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAA 469
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CAAATGTAGATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAA 605
Query 470 CAGATGAGGATGAA-AAG-G-AGG-GGAACAACGAAGATAGTGATGGGTATGATGATTAT 525
|||||||||||||| ||| | ||| ||| |||||||||| ||| ||||||||||||||||
Sbjct 604 CAGATGAGGATGAAGAAGAGGAGGAGGA-CAACGAAGATGGTGCTGGGTATGATGATTAT 546
Query 526 CAGGGTGACGATGGATCTATGGAGGGAAGTACCCTCGATC 565
|||||||| ||||||||||||| |||||||||||||||||
Sbjct 545 CAGGGTGATGATGGATCTATGGGGGGAAGTACCCTCGATC 506
Score = 102 bits (55), Expect = 5e-21
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 773 ACTTGGGTGACCGTACACCAGCTGTGACTCCAAGAAGTATGTGTCAACATGGTTTGTACC 832
||| || ||||||||||||| | |||||||||||| ||| ||||||||||||||||||||
Sbjct 477 ACTCGGTTGACCGTACACCAACGGTGACTCCAAGACGTACGTGTCAACATGGTTTGTACC 418
Query 833 AATGTACGTACAC 845
|||||||||||||
Sbjct 417 AATGTACGTACAC 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5