BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28810.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322957 jgi|Araly1|322957|fgenesh1_pm.C_scaffold_5000501 1626 0.0
Ahg936699 jgi|Araly1|936699|scaffold_500890.1 680 0.0
Ahg916364 jgi|Araly1|916364|Al_scaffold_0008_1115 180 3e-44
Ahg936672 jgi|Araly1|936672|scaffold_500863.1 86.1 6e-16
> Ahg322957 jgi|Araly1|322957|fgenesh1_pm.C_scaffold_5000501
Length=1332
Score = 1626 bits (880), Expect = 0.0
Identities = 1198/1344 (89%), Gaps = 51/1344 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAGAGTTCAGCTATTTTTATGCTTTACCATTCTTTTTGCATCAGTGACTCTTCTG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCAAGAGTTCAGCTATTTTTATGCTTTACCATTCTTTTTGCATCTGTGACTCTTCTG 60
Query 61 GACATCGTTTCAGCTCATTTGAAGCTTAAGCCAACTTTGCCTCAGATTGAACCTCCACAA 120
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 61 GACGTCGTTTCAGCTCATTTGAAGCTTAAGCCAACTTTGCCTCAGATCGAACCTCCCCAG 120
Query 121 ACGTTGAAGGATGTTGAACCTTACACCGTTAAAGTAGTGATAGTCTTTGTGTCCGACCTC 180
||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 ACGGTGAAGGATGTGGAACCTTACACCGTTAAAGTAGTGATGGTCTTTGTGTCAGACCTC 180
Query 181 GAGAAAGAATGTCCCAAGACAAATAAATTCAAGGCTTTCTTTGAGAAACTTAGGGCATTC 240
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |
Sbjct 181 GAGAAAGAATGTCCCAAGACAAATAAATTTAAGGCCTTCTTTGAGAAACTCAGGGCATAC 240
Query 241 GCCAAGTATGTCTGCCCAATAAAAAGAAAAGACCAAGTAGATTACGACCGAGACATGAAG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCAAGTATGTTTGCCCAATAAAAAGAAAAGACCAAGTAGATTACGACCGAGACATGAAG 300
Query 301 GCCAAGGCTGGAGGCCTCTTCCAAG-TCATATCTTCTTTTGCGATTGGAAAGATAAAAAA 359
|||||||| ||||||||||||| || ||||||||||||||| |||||||||||||||||
Sbjct 301 GCCAAGGCCGGAGGCCTCTTCC-AGACCATATCTTCTTTTGCCATTGGAAAGATAAAAAA 359
Query 360 GGAAATTCAAGAGGATAAAATGGAAGTTATTAATACCTTTAAGTTTATGAGATTTCTTGC 419
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGAAATTCAAGAGGAGAAAATGGAAGTCATTAATACCTTTAAGTTTATGAGATTTCTTGC 419
Query 420 GACTAAAATTGTGGGAAGCCGCAAAAAGGAGGAGAGCGAGGAATCAATGAAGCTAACAGC 479
| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGCTAAGATTATGGGAAGCCGCAAAAAGGATGAGAGCGAGGAATCAATGAAGCTAACAGC 479
Query 480 AGAACAACAAAAAGAAATCAAAGAAGGGATCTTAAGATGGGAAACAATCATTACTCGGAT 539
||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 480 AGAACAACAAAAAGAAATCAATGAAGGAATCTTAAGATGGGAAACAATTATTGCTCGGAT 539
Query 540 CACAAACACAATGGTA-TCGAGCACAACCAACTCTGCTTCTTCCAATGAAGAGTCTAGTG 598
|||||||||||||||| | ||| |||| || | | ||||||| | |||| | |||| |
Sbjct 540 CACAAACACAATGGTAAT-GAGTACAAAAAA-T-T-CTTCTTCTAGTGAAAACTCTACTA 595
Query 599 TTGGGAAAGAAGCTTCCAGCGAAAACAGCAAAA--G----CTCTGGTAAAGAAAGTGAGA 652
||||| |||||||| |||| | |||||||| | |||| |||| | | | |
Sbjct 596 CGGGGAAGGAAGCTTCAAGCGGCAGCAGCAAAAAAGGAGGCTCTTCCGAAGACACTAA-A 654
Query 653 GTT-C---CGCTAA-A-GG-TGAAAGTG-AGACATCCGCTAAA--GGTGAAAG-TAAGAC 701
| | | | |||| | || || |||| | || | || | ||| ||| | |
Sbjct 655 GGTGCAAACACTAACAAGGGTGGAAGTCCATCCAGCAGCCCATCTGGTTCAAGCT----C 710
Query 702 TTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAAGTGCTGGTGGAAGCTCTACAAG 761
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 711 TTCCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAACTACCGGTGGAAGCTCTACAAG 770
Query 762 CGCTACT-AAA-G-AA-G-------A----AA--GTTC-CGCTAGTCAGAGCAGTGGTGT 803
||||||| ||| | || | | || ||| |||||||||||||||||||||
Sbjct 771 CGCTACTCAAAAGGAAAGCTCCGCTAGTGGAAATGTTGGCGCTAGTCAGAGCAGTGGTGT 830
Query 804 AACAGT-GACACAAGTCGAGGAAGAGACGTCCAAAGATGTTTCGACATTCATAATGAACC 862
|||||| | ||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 831 AACAGTAG-CACAAGTTGAGGAAGAGACTTCCAAAGATGTCTCGACATTCATAATGAACC 889
Query 863 TCGAAAAGAAGTGTCCACAAAAGGAGGAATACAAGGTCTTCTTCGAGCAACTCAAGGGTA 922
|||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 890 TCGAAAAGAAATGTCCGCAAAAAGAGGAATTTAAGGTCTTCTTCGAGCAACTCAAGGGTA 949
Query 923 CAATGATTGCTCCCCCCAAAGAAAGAAAAGGTTTATTTTCTAGGATTAAATCTGCTGCTG 982
|||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 950 CAATGACTGCTCCCGCCAAAGAAAGAAAAGGTTTGTTTTCTAGGATTAAATCTGCTGCTG 1009
Query 983 GTAAACTATCGGGTGCGATGGGAGTTATGCGGTCTAGAATTGGAAGCAAATCAGCAGAGG 1042
| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1010 GGAAACTATCTGGTGCGATGGCAGTTATGCGATCTAGAATTGGAAGCAAATCAGCAGAGG 1069
Query 1043 TTAAAAAGTCTATGGAAACTTACCAAGAGCAAGTGATGAAAACTCTTCAAGAGTTAGATA 1102
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1070 TTAAAAAGTCTATGGAAACTTACCAAGAACAAGTGATGAAAACTCTCCAAGAGTTAGATA 1129
Query 1103 CCATCCACAGTCAAATTGTGAGTCAGAACCAAGGCAAGAAAGAAGGATCTTTGACATGCA 1162
|||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1130 CCATTCACAGTCAAATTGTGAGTCAGAATAAAGGAAAGAAAGAAGGATCTTTGACATGCA 1189
Query 1163 CACCAGCACAACAAACACAGATTAAGACA-ACAATTACTAAGTGGGAACAAGTCACAACC 1221
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1190 CACCAGCACAACAAACTCAGATTAAG-CAGACAATTACTAAGTGGGAACAAGTCACAACC 1248
Query 1222 CAATTCGTAGAGACCGCTATTCAGAGCGAGACAAAGTCATCATCAACTACTTCATCTTCT 1281
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1249 CAATTCGTGGAGACCGCTATTCAGAGCGAGACAAAGTCTTCGTCAACTACTTCATCTTCT 1308
Query 1282 GTTGGCAAAATGAACACAAATTGA 1305
|| ||||| ||||||||||| |||
Sbjct 1309 GTCGGCAAGATGAACACAAACTGA 1332
> Ahg936699 jgi|Araly1|936699|scaffold_500890.1
Length=1511
Score = 680 bits (368), Expect = 0.0
Identities = 535/611 (88%), Gaps = 30/611 (5%)
Strand=Plus/Plus
Query 644 AAAGTGAGAGTTCCGCTAAAGGTGAAAGTGAGACATCCGCTAAAGGTGAAAGTAAGACTT 703
||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 842 AAAGTGAGACTTCCGCTAAAGGTGAAAGTGAGACTTCAGCTAAAGGTGAAAGTGAGACTT 901
Query 704 CCGCTAAAGGTGAAAGTGAGACTTCCTCTTCAAAAAGTGCTGGTGGAAGCTCTACAAGCG 763
||||||||||||||||||||||||| |||||||||| |||||| |||||||| | || |
Sbjct 902 CCGCTAAAGGTGAAAGTGAGACTTCTTCTTCAAAAACTGCTGGGGGAAGCTC-A-AA-TG 958
Query 764 CTACTAAAGAAGAAAGTTCCGCTAGTCAGAGCAGTGGTGTAACAGTGACACAAGTCGAGG 823
| | | || |||||||||||||| ||||||| ||||||||||||||||
Sbjct 959 -T-C-------G-AA-----GCTAGTCAGAGCAGCAGTGTAACCGTGACACAAGTCGAGG 1003
Query 824 AAGAGACGTCCAAAGATGTTTCGACATTCATAATGAACCTCGAAAAGAAGTGTCCACAAA 883
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AAGAGACATCAAAAGATGTCTCGACATTCATAATGAACCTCGAAAAGAAGTGTCCACAAA 1063
Query 884 AGGAGGAATACAAGGTCTTCTTCGAGCAACTCAAGGGTACAATGATTGCTCCCCCCAAAG 943
||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1064 AGGAGGAATTCAAGGTCTTCTTCGAGCAACTTAAGGGTACAATGATTGCTCCCCGCAAAG 1123
Query 944 AAAGAAAAGGTTTATTTTCTAGGATTAAATCTGCTGCTGGTAAACTATCGGGTGCGATGG 1003
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1124 AAAGAAAAGGTTTGTTTTCTAGGATTAAATCTGCTGCTGGGAAACTATCTGGTGCCATGG 1183
Query 1004 GAGTTATGCGGTCTAGAATTGGAAGCAAATCAGCAGAGGTTAAA-AAGTCTATGGAAACT 1062
|||||||||||| |||||||||||||||||||| ||||| ||| ||| ||||||| ||
Sbjct 1184 CAGTTATGCGGTCAAGAATTGGAAGCAAATCAGCTGAGGT-AAAGAAGAATATGGAAGCT 1242
Query 1063 TACCAAGAGCAAGTGATGAAAACTCTTCAAGAGTTAGATACCATCCACAGTCAAATTGTG 1122
|||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1243 TACCAAGAACAAGTGATGACGACTCTCCAAGAGTTAGATACCATCCACAGTCAAATTGTG 1302
Query 1123 AGTCAGAACCAAGGCAAGAAAGAAGGATCTTTGACATGCACACCAGCACAACAAACACAG 1182
||||||||| |||||||| | | ||| ||||||||||||| |||||||||| |||
Sbjct 1303 AGTCAGAACAAAGGCAAG---G--GT-TCTATGACATGCACACCCGCACAACAAATGCAG 1356
Query 1183 ATTAAGACA-ACAATTACTAAGTGGGAACAAGTCACAACCCAATTCGTAGAGACCGCTA- 1240
|||||| || ||||| || || |||||| ||||||| ||||||||||| ||| || |
Sbjct 1357 ATTAAG-CAGACAATCACCAAATGGGAAAAAGTCACGACCCAATTCGTTGAGGTTGC-AG 1414
Query 1241 TTCAGAGCGAG 1251
|||||||||||
Sbjct 1415 TTCAGAGCGAG 1425
Score = 130 bits (70), Expect = 3e-29
Identities = 80/85 (94%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 644 AAAGTGAGAGTTCCGCTAAAGGTGAAAGTGAGACATCCGCTAAAGGTGAAAGTAAGACTT 703
||||||||| |||||| ||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 794 AAAGTGAGACTTCCGCCAAAGGTGAAAGTGAGACTTCCGCTAAAGGTAAAAGTGAGACTT 853
Query 704 CCGCTAAAGGTGAAAGTGAGACTTC 728
|||||||||||||||||||||||||
Sbjct 854 CCGCTAAAGGTGAAAGTGAGACTTC 878
> Ahg916364 jgi|Araly1|916364|Al_scaffold_0008_1115
Length=369
Score = 180 bits (97), Expect = 3e-44
Identities = 215/270 (80%), Gaps = 16/270 (6%)
Strand=Plus/Plus
Query 379 ATGGAAGTTATTAATACCTTTAAGTTTATGAGATTTCTTGCGACTAAAATTGTGGGAAGC 438
|||||| | || ||||||||||| |||| ||||| | | ||| ||| ||| | || |
Sbjct 1 ATGGAAATCATAAATACCTTTAAATTTACGAGATCTGTGGCGGGTAAGATTATAGGCGGT 60
Query 439 CGCAA-AAAGGAGGAGAGCGAGGAATCAATGAAGCTAACAGCAGAACAACAAAAAGAAAT 497
||||| ||| |||||| |||| ||||| |||||||||||| | ||||||||||||||||
Sbjct 61 CGCAAGAAA-GAGGAGGGCGAAGAATCGATGAAGCTAACAACTCAACAACAAAAAGAAAT 119
Query 498 CAAAGAAGGGATCTTAAGATGGGAAACAATCATTACTCGGATCACAAACACAATGGTATC 557
||||||||||||||||| |||||| ||| | ||||||||||||||||||||||| || |
Sbjct 120 CAAAGAAGGGATCTTAAAATGGGAGACAGTGATTACTCGGATCACAAACACAATTGT-T- 177
Query 558 G-A-GCACAACCAACTCTGCTTCTTCCAATG-AAGAGTCTA-GTGTTGGGAAAGAAGCTT 613
| | ||||||| |||||| | |||| |||| || | |||| | | | ||||||| ||
Sbjct 178 GTAAGCACAACAAACTCT--T-CTTC-AATGGAAAATTCTACGAGAAGAAAAAGAAG-TT 232
Query 614 CCAGCGAAA--AC-AGCAAAAGCTCTGGTA 640
| |||| | | ||||||||||||||||
Sbjct 233 CTAGCGGTAGTATTAGCAAAAGCTCTGGTA 262
> Ahg936672 jgi|Araly1|936672|scaffold_500863.1
Length=1631
Score = 86.1 bits (46), Expect = 6e-16
Identities = 74/87 (85%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 1155 GACA-TGCACACCAGCACAACAAACACAGATTAAGACA-ACAATTACTAAGTGGGAACAA 1212
|||| || ||| || ||||||| ||| || ||||| || ||||| || ||||||||||||
Sbjct 1455 GACAGTG-ACATCAACACAACAGACAGAGCTTAAG-CAGACAATCACCAAGTGGGAACAA 1512
Query 1213 GTCACAACCCAATTCGTAGAGACCGCT 1239
||||||||||||||||| ||||| |||
Sbjct 1513 GTCACAACCCAATTCGTTGAGACTGCT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5