BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28830.1
Length=1949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484653 jgi|Araly1|484653|fgenesh2_kg.5__645__AT3G28830.1 1362 0.0
Ahg936672 jgi|Araly1|936672|scaffold_500863.1 233 3e-60
Ahg481434 jgi|Araly1|481434|fgenesh2_kg.4__494__AT2G25820.1 54.7 3e-06
> Ahg484653 jgi|Araly1|484653|fgenesh2_kg.5__645__AT3G28830.1
Length=1893
Score = 1362 bits (737), Expect = 0.0
Identities = 894/965 (93%), Gaps = 29/965 (3%)
Strand=Plus/Plus
Query 1000 aaggaagtgcaagtgctcaaggaagcgcaagtgctcaaggaagtgcaagtgctcaaagaa 1059
||| |||||| |||||||||||| |||||||| |||||||||| || ||||||||| |||
Sbjct 940 AAGAAAGTGCGAGTGCTCAAGGAGGCGCAAGTTCTCAAGGAAGCGCTAGTGCTCAAGGAA 999
Query 1060 gag-aaagtgGGGCAATG-GCTATGTCCAAGAGCAGAGAAACAAAGACATCGAGCCAAAG 1117
| ||| |||||||| | ||| | ||||||| || ||||||||||||||||||||||||
Sbjct 1000 TTGTAAA-TGGGGCAA-GAGCTTTCTCCAAGAACAAAGAAACAAAGACATCGAGCCAAAG 1057
Query 1118 ACAATCCAAATCATCGAGTGAAAGTTCATCTTCTAGCACAACCACCACAACAGTGAAACA 1177
|||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1058 ACAATCAAAATCATCGAGCGAAAGTTCATCTAGTAGCACAACCACCACAACAGTGAAACA 1117
Query 1178 AGTCGAGAGTGAGACTTCCAAAGAAGTAATGTCATTCATAA-TGCAACTCGAGAAGAAGT 1236
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1118 AGTCGAGAGTGAGACTTCCAAAGAAGTAATGTCATTCATAACT-CAACTCGAGAAGAAGT 1176
Query 1237 ATGCAGCAAAGGCGGAACTCAAGGTCTTCTTCGAGTCTCTAAAGTCTTCCATGCAAGCTT 1296
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 ATGCAGCAAAGTCGGAACTCAAGGTCTTCTTCGAGTCTCTGAAGTCTTCCATGCAAGCTT 1236
Query 1297 CCGCAAGCGTTGGTTCCAAAACCGCGAAAGACTATGTTTCTGCCTCAAAAGCAGCCACTG 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CCGCAAGCGTTGGTTCCAAAACCGCGAAAGACTATGTTTCTGCCTCAAAAGCAGCCACTG 1296
Query 1357 GTAAACTCTCCGAAGCCATGGCTTCAGTGAGTTCCAAAAATGTCAAATCAGCAAAGATGA 1416
|||||||||| |||||||||||| |||| || || |||||||||||||||||||||||||
Sbjct 1297 GTAAACTCTCTGAAGCCATGGCTACAGTTAGCTCAAAAAATGTCAAATCAGCAAAGATGA 1356
Query 1417 AGAGCAACTTGGACACTAGCAAAGATGAAATGCTGAAGTGTGTCAAACAAATTCAAGATA 1476
|||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct 1357 AGAGCAACTTGGACACCAGCAAAGATGAATTGATGAAGTGTGTCAAACAAATTCAAGATA 1416
Query 1477 TCAACGGTAAAATGGTGAGTGGCAAGACCGTGTCATCAACACAACAGTCAGAGCTCAAGC 1536
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TCAACAGTAAACTGGTGAGTGGCAAGACCGTGTCATCAACACAACAGTCAGAGCTCAAGC 1476
Query 1537 AGACAATCACCAAGTGGGAAAAGGTCACCACCCAATTTGTTGAGACCGCTGCTTCTTCAA 1596
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1477 AGACAATCACCAAGTGGGAAAAAGTCACCACCCAATTTGTTGAGACCGCTGCTTCTTCGA 1536
Query 1597 GTTCATCGTCATCCTCATCCTCATCCTCATCCTCATCTTCTGCTGCTTCTCAGCAGCAGG 1656
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1537 GTTCATCGTCATCCTCATCCTCATCCTCATC-T--TCT---GCTGCTTCTCAGCAGCAGG 1590
Query 1657 GCAATGCAGCAATGGTCAAGACTAATTGAGTTTAAAGGTGAAGTTACTTTATTGCGCAAA 1716
||||||||| |||||||||||||||||||||| ||||| |||||| |||||| || ||||
Sbjct 1591 GCAATGCAGGAATGGTCAAGACTAATTGAGTTCAAAGGCGAAGTTGCTTTATCGC-CAAA 1649
Query 1717 AGATCACCAAGAAAGACACAACCAGTAATGCCAAA-TATTATAATAAGTAG-T--T-AAC 1771
||||||||||||||||| |||||||||||||||| ||||||||||||||| | | |||
Sbjct 1650 -GATCACCAAGAAAGACAAAACCAGTAATGCCAAAATATTATAATAAGTAGCTAATTAAC 1708
Query 1772 TATTAGAT-A---ATTTTTCTTGTAAATAAAACTAAGATCGGT-ATAGGTAAGCAT---- 1822
|||||||| | ||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1709 TATTAGATCATTTATTTTTCATGTAAATAAAACTAAGATCGGTTATAGGTAAGCAAGCAA 1768
Query 1823 TGCATGCTTATAAACCGATGTATGCAAGTAATAACTCTGTaaaaaaa-CGTTACAGATAG 1881
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1769 TGCATGCCTATAAACCGATGTATGCAAGTAATAACTCTGTAAAAAAAACGATACAGATAG 1828
Query 1882 ATTGTAACCGCTTTGTATGTTAACATACAAAAGTGAGTGATACCTATGAAAGGGATTTTT 1941
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1829 ATTGTAACCGCTTTGTATGTTAACATACAAAAGTGAGTGATACCTATTAAAGGGATTTTT 1888
Query 1942 GAATA 1946
|||||
Sbjct 1889 GAATA 1893
Score = 1291 bits (699), Expect = 0.0
Identities = 920/1024 (90%), Gaps = 26/1024 (3%)
Strand=Plus/Plus
Query 1 ATCCCAAAAGGAGaaaaac-aaacaaaaaacaaaacaaaacaaaaaccaaaaaaacaaaa 59
|||| |||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||
Sbjct 1 ATCCAAAAAGGAGAAAAACAAAAAAAAAAACAAAACAAAACCAAAACC--AAAAA-AAAA 57
Query 60 aaaTAAATGGCAAGAATTTCACTAGGGATATGTCTGATGTTAGTAGTAGCATCAAGTGTG 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAA-AAATGGCAAGAATTTCACTAGGGATATGTCTGATGTTAGTAGTAGCATCAAGTGTG 116
Query 120 ATCTATGAAGCGCAAGGAACGTTCTTACTAAACCATTACTTGAAGAAGAATTTTCCaaaa 179
||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
Sbjct 117 ATCTATGAAGCGCAAGGAACGTTCTTATTAAAACTTTACTTGAAGAAGAATTTTCCAAGA 176
Query 180 aaaTGCAACGAGTTTACGCCTTACGCTAACAAGGGTATGATAACGTTGGTGACCGATCTC 239
||||| |||||||||||||||| ||| |||||||||||||| ||||||||||| |||||
Sbjct 177 AAATGTAACGAGTTTACGCCTTTCGCCAACAAGGGTATGATGACGTTGGTGACTGATCTA 236
Query 240 GAAGGTAGCAGTCCGGCCACTACAGAGTTCAAGACTTTCTTTACACAGTTCAAGTCTTAC 299
||||||||| ||| || ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 237 GAAGGTAGCTCTCCCGCGACTGCAGAGTTCAAGACATTCTTTACACAGTTCAAGTCTTAC 296
Query 300 ATGTCTTTCATCGAGACAACATCGGCCTCAACAAAAAATGTTGATGCCGAGATGACAGCT 359
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
Sbjct 297 ATGTCCTTCATCGAGACGACATCTGCCTCAACAAAAAATGTTGATGCCGAGATGACAACC 356
Query 360 AAATGTGACGGTCTTTTCAAGGCCATGTCTGCATTGAGTGCTAGTAAAGGCGTCAAATCA 419
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 357 AAATGTGACGCACTTTTCAAGGCCATGTCTGCATTGAGTGCTGGTAAAGGCGAAAAATCA 416
Query 420 GCGGATGCTGGGAGTATGAAGATGACCATGTTGTCGATGGGAAAGACTTTGGTTGAGCAG 479
||||| |||||| |||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 417 GCGGAGGCTGGGGGTATGAAGGCGACCCTGTTGTCTATGGGAAAGACTTTGGTTGAGCAG 476
Query 480 AAGAAGAATACAAAGATAATGACATTGAAGGAAAAGAAAGAGTTGGTCATAGATATGGTG 539
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 477 AAGAAGAATACAAAGATAATGACATTGAAGCAAAAGAAAGAGTTGGTCATATCTATGGTG 536
Query 540 AAATGGACTAAAATGGTCGCTACATTTGTGAAGTCGGCCTCCGAGCAGAAAGGAAAGTCT 599
||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||
Sbjct 537 AAATGGACTAAAATGGTTGCTACATTCGTAAAGTCGGCCTCCGAGAAGAAAGGAAAGTCA 596
Query 600 ATCAATATAGCATCTTATGGTCTTGATGTCGATGTTAACGATAGTTCTATTGTCGGTGGA 659
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 597 ATCAATATAGCATCTTATGGTCTTGATGTCGATGTTAATGACAGTTCTATTGTTGGTGGA 656
Query 660 GCTGCAAGTAGTGAATCATCCTCCACTAAATCTGGATCTGTTTCCAGTAGCGGAAGTGTT 719
||||||||||||||||| | || |||||||||||| | ||||||| |||||||||||||
Sbjct 657 GCTGCAAGTAGTGAATC--C-TCAACTAAATCTGGAGCAGTTTCCACTAGCGGAAGTGTT 713
Query 720 TCTACCAAGTCGAAAGAATCGAGTAGTAGTGGAAGTTCTGCCAGTGGAAGTGTTGCTACC 779
||||||||| | ||||||||||||||| | | ||||||| |||| |||||||||| ||||
Sbjct 714 TCTACCAAGACAAAAGAATCGAGTAGT-G-G-AAGTTCTTCCAGCGGAAGTGTTGATACC 770
Query 780 AAATCCAAAGAATCCAGCGGTGGAAGTGCTGCTACCAAATCCAAAGAATCTAGCGGTGGA 839
||||| |||||||| ||||||||||||| |||| ||||||| |||||||| |||||||||
Sbjct 771 AAATCAAAAGAATCAAGCGGTGGAAGTGTTGCTGCCAAATCAAAAGAATCAAGCGGTGGA 830
Query 840 AGTGCTGCTACCAAATCCAAAGAATCTAGTGGTGGAAGTGCTACTACAGGTAAAACTTCG 899
||||||||| | | ||| || | ||| | ||||||||||||| ||||
Sbjct 831 AGTGCTGCTGG-AG--C-AAATT-TC-A-------AAGA-C-ACTACAGGTAAAAATTCG 875
Query 900 GGCAGTCCGAGCGGAAGTCCTAAGGCCAGCCCATCTGGTTCAGTTAGTGGCAAATCATCT 959
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 876 GGCAGTCCGAGCGGAAGTCCCAAGGCCAGCCCATCTGGTTCAGTTGGTGGCAAATCCTCT 935
Query 960 Tcaaaaggaagcgcaagtgctcaaggaagcgcaagtgctcaaggaagtgcaagtgctcaa 1019
||||||| ||| || |||||||||||| |||||||| |||||||||| || |||||||||
Sbjct 936 TCAAAAGAAAGTGCGAGTGCTCAAGGAGGCGCAAGTTCTCAAGGAAGCGCTAGTGCTCAA 995
Query 1020 ggaa 1023
||||
Sbjct 996 GGAA 999
> Ahg936672 jgi|Araly1|936672|scaffold_500863.1
Length=1631
Score = 233 bits (126), Expect = 3e-60
Identities = 382/501 (76%), Gaps = 36/501 (7%)
Strand=Plus/Plus
Query 60 aaaTAAATGGC-AAGAATTTCACTAGGGATATGTCTGATG-TTAGTAGTAGCATCAAGTG 117
||| ||||||| || ||||| ||||| ||||||||| || ||| | || ||||||||||
Sbjct 17 AAA-AAATGGCGAAAAATTT-ACTAGCAATATGTCTGGTGTTTA-TGGTTGCATCAAGTG 73
Query 118 TGATCTATGAAGCGCAAGGAACGTTCTTACTAAACCATTACTTGAAGAAGAATTTTCCaa 177
|| ||||||||| |||||| || ||||| |||| | |||||||| || ||| ||||| |
Sbjct 74 TGGTCTATGAAGTGCAAGGGACTTTCTTGTTAAAGCTTTACTTGAGGAGGAAGTTTCCCA 133
Query 178 aaaaaTGCAACGAGTTTACGCCTTACGCTAACAAGGGTATGATAACGTTGGTGACCGATC 237
| || ||| ||| | |||| |||| ||| |||||| | | | | |||| | | |
Sbjct 134 GACGTTGTGTCGACTTTGCCCCTTTTGCTAGCAAAGGTATGTTGATGCTCGTGAGCAACC 193
Query 238 TCGAAGGTAGCA-GTCCGGCCACTACAGAGTTCAAGAC-TTTCTTTAC-ACAGTTCAAGT 294
| |||||| | | |||| || |||| ||||||||| || |||||| | || ||||||||
Sbjct 194 TTGAAGGT-GGATGTCCCGCAACTAGAGAGTTCAA-ACAATTCTTTTCAAC-GTTCAAGT 250
Query 295 CTTACATG-TCTTTCATCGAG-ACAACATCG---GCCTCAACAAAAAATGTTGATGCCGA 349
|||||||| |||| ||| || | ||||| ||||| | ||||| |||||| ||
Sbjct 251 CTTACATGAGCTTT-ATC-AGCTCGGCATCGATATCCTCATCGAAAAACATTGATGTGGA 308
Query 350 GATGACA-GCTAAATGTG-ACGGTCTTTTCAAGGCCATGTCTGCATTGAGTGCTAGTAAA 407
||||| | | ||||||| | | ||| |||||| ||||||||||||| || ||||||
Sbjct 309 GATGA-ATGGGAAATGTGAATTG-CTTGCCAAGGCTATGTCTGCATTGACTGGAAGTAAA 366
Query 408 GGC-GTCAAATCAGCGGATGCTGGGAGTATGAAGATGACCATGTTGTCGATGGGAAAGAC 466
|| | | ||| | || | ||||| | || || ||||||||||| |||||||||||
Sbjct 367 AGCAG-CCAAT---C--AT-C--GGAGT-TAAAAATTACCATGTTGTCAATGGGAAAGAC 416
Query 467 TTTGGTTGAGCAGAAGAAG-AA--TACAAAGATAATGACATTGAAGGAAAAGAAAGAGTT 523
||||||||||||||||| | || | ||| ||||||| |||||||| |||||||||||||
Sbjct 417 TTTGGTTGAGCAGAAGAGGCAAGGTTCAAGGATAATGTCATTGAAGCAAAAGAAAGAGTT 476
Query 524 GGTCATAGATATGGTGAAATG 544
||| | | ||||||||||||
Sbjct 477 GGTTGTGGCTATGGTGAAATG 497
> Ahg481434 jgi|Araly1|481434|fgenesh2_kg.4__494__AT2G25820.1
Length=732
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1605 TCATCCTCATCCTCATCCTCATCCTCATC 1633
|||||||||||||||||||||||||||||
Sbjct 415 TCATCCTCATCCTCATCCTCATCCTCATC 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73247541135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5