BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28840.1
Length=1448
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484654 jgi|Araly1|484654|fgenesh2_kg.5__646__AT3G28840.1 1568 0.0
> Ahg484654 jgi|Araly1|484654|fgenesh2_kg.5__646__AT3G28840.1
Length=1407
Score = 1568 bits (849), Expect = 0.0
Identities = 1259/1447 (87%), Gaps = 68/1447 (5%)
Strand=Plus/Plus
Query 30 taaaaaatattaaacaaaaagaacaaaaaaaatggcaaaaCTTTCATTAGCATTAGGTCT 89
||||||| ||||||| |||| ||| ||||||||||||||| |||||||||||||||||||
Sbjct 1 TAAAAAAGATTAAAC-AAAA-AAC-AAAAAAATGGCAAAAATTTCATTAGCATTAGGTCT 57
Query 90 ATTGCTACTATTAGCATTAAGTGAGGTCTACGAAGTGCAAGGGTCGTTCTTATTGAGGCA 149
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 58 ATTGCTACTAGTAGCATTAAGTGAGGTCTACGAAGTGCAAGGGACGTTCTTATTTAGGCA 117
Query 150 TTACATGAGGAAATTTCCCAGAAGGTCCAGAGACTTTCGGCCATTCGCTTGC-AGAGGTA 208
|||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 118 TTACTTGAGGAAATTTCCCAGAAGGTCCAGAGACTTTCGACCATTCGCTTGCAAG-GGTA 176
Query 209 TGTTGAAGTTCGTGGACGTTTTGGAGCTTAAGTGTCCATTAAAGCCACAATACAAGAGCT 268
|||||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||
Sbjct 177 TGTTGAAGTTCGTGGACGTTTTGGAGGTTAGGTGTCCATTGAAGCCACAATATAAGAGCT 236
Query 269 TCTTCGGAAACCTAAGGTCTTACATGAACTTCATAAACTCGGCATCCGGGTCGAAAAACT 328
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 237 TCTTCGGAAACCTAAGATCTTACATGAACTTTATAAACTCGGCGTCCGGGTCGAAAAACT 296
Query 329 TTGATGCCGAGCTAAAAGGGAAAGCCCAGGG-CCTCTTCTCAGCTATGTCTGCAATGAGT 387
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 297 TTGATGCCGAGCTAAAAGGGAAAGCCCAGGGTCTTC-TCTCAGCTATGTCTGCAATGAGT 355
Query 388 GGCAAAGGCGCCGCATCGGCTGATTCTAGCAAGGTTATGGATACATTGCTGTCAATGGGA 447
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 GGCAAAGGCGGAGCATCGGCTGATTCTAGCAAGGTTATGGATACATTGTTGTCAATGGGA 415
Query 448 AAGACATTGGGCACCCAACAGCAGAGCGGTTCATCGGTAATGTCGCTTGGACAAAGGAAA 507
||||| ||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 416 AAGACTTTGGGCAACCAGCAGCAGAGCGGTTCAACGGTAATGTCGTTTGGACAAAGGAAA 475
Query 508 GAGATGATCATGTCTATGGCGAAGTGGGCACAAACGATTGGTCAATTTGTTGTGAGTGCT 567
||||||||||||||||||| ||| ||||||||||| |||||||||||||| | |||||||
Sbjct 476 GAGATGATCATGTCTATGGTGAAATGGGCACAAACAATTGGTCAATTTGTCGCGAGTGCT 535
Query 568 GCAGCAAAGAGCGGAAACAAAATTGATATCTCATCTTTAGGAATTGATGGCATTGATGCT 627
|||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 536 GCAGCAAAGAGCGGTAACAAAATCGATATATCATCTTTAGGAATTGATGGTATTGATGCT 595
Query 628 AGTGCTGCCG--G-AGCTGGAGATTCTACTGCCAGTGGTGGAGTTTCTGCCACCGGAACT 684
| |||||||| | |||||||||||||||||||| ||| | ||||
Sbjct 596 AATGCTGCCGCCGGAGCTGGAGATTCTACTGCCA------------CTG-----G-AACT 637
Query 685 GGAAGTTATGGCGCGGGAGCTGGAGGTTCTAGCGCTTCTGGCTCAGATACCGCAGCTGGA 744
||||||| ||||||| | |||||||||||| | || ||||||||||||| |||||||||
Sbjct 638 GGAAGTTCTGGCGCGACAACTGGAGGTTCTACCACTGCTGGCTCAGATACGGCAGCTGGA 697
Query 745 GGCACTACCGCAACTGGAGGCAC-TACCGCAGCTGGAGGCTCTACGGCCGCTGGAGGCAC 803
||||||||||| |||| | | ||| ||||||||||| | ||| || |||| |
Sbjct 698 GGCACTACCGCTGCTGGCG-CTGGTACTGCAGCTGGAGGTTATACCGCTACTGGCT-CTG 755
Query 804 -TACTGCTAG-TGGTGCTGGTACCGCA---GGCTATGGTGCCA-CAGCTGGAGGC-GCTA 856
||| || || ||| |||||||| || ||| |||| | | ||||||| | | ||
Sbjct 756 GTACCGC-AGCTGGCACTGGTACCACAACTGGCGCTGGTAC-AGCAGCTGGCT-CTGGTA 812
Query 857 CCGCTAG-TGGCGCTGGTACTGC-AGCTGGAGGCAC-TACCGCTAG-TGACGCTGGTACC 912
| || || ||| | | ||| | | || | | |||||| || || |||||||||
Sbjct 813 CTGC-AGCTGGAGGTTATACAACTA-CTA-ACTCTGGTACCGC-AGCTGGCGCTGGTACA 868
Query 913 GCAGCTGGA---ACTACCGCTAG-TGGCGCTGGTACCGCAGCTGGAGGCACAAccgcagc 968
||||||||| |||||||| | |||| |||||||||||||||||||||| ||||| ||
Sbjct 869 GCAGCTGGAGGCACTACCGCC-GCTGGCCCTGGTACCGCAGCTGGAGGCACTACCGCCGC 927
Query 969 tggggctggtgccgcagctgg-ggctggtgccgcagctggggctggtgccgcagctggAG 1027
||| |||||| |||||||||| ||| | |||| ||||| |||||| ||||||||||||
Sbjct 928 TGGCGCTGGTACCGCAGCTGGAGGCAC-TACCGCCGCTGGCGCTGGTACCGCAGCTGGAG 986
Query 1028 GCACTACCGCCGCTGGCGGTGTAAGTGGAAGCTATGGCAGTAGTGGAGGAAGTGCTTCGA 1087
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 987 GCACTACCGCTGCTGGCAGTGTAAGTGGAAGCTATGGCAGTAGTGGAGGAAGTGCTTCAA 1046
Query 1088 ACACCAATGGTGGAACTAGTAGTTGCGGCACAAGTGCGTGTTCTAATGGTGGTGGAGCCT 1147
||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 1047 ACACCAATGTTGGAACTAACAGTTGCACCACAAATGCGTGTTCTAATGGTGGTGGAGCCT 1106
Query 1148 CCTTTAAAGGTGCTATGAACTTTCAAGGAAAGGCATCCTCTCAGTCTCAACAAGCTGCAT 1207
|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| || |
Sbjct 1107 CCTTCAAAGGTGCTATGAACTTTCAAGGAAAGGCATCCTCTCGGTCTCAAGAAGCCGCGT 1166
Query 1208 CATCCCAAACCTCTAATGGCTCCAGTTAGATAAGGGCCGACCTAGCATATATATAAACGT 1267
|| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1167 CAACCCAAACTTCTGATGGCTCTAGTTAGAAAAGGGCCGACCTAGCATATATATAAACGT 1226
Query 1268 ACGTATTAATATTATTTAAATAAGAAGATGGCCCTGCTAACATATTAAAGCAGCGAGCTG 1327
| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1227 A--T-T-AATATTATTTAAATAAGAAGACGGCCCTGCTAACATATTAAAGCAGCGAGCTG 1282
Query 1328 TAGAATGTTTTGGCTTTATGTATCTAAGCCT-TTTTCTATAATAT----GAGAATATTTT 1382
|||||||||| |||||||| ||||||||||| |||| |||||||| ||||| |||||
Sbjct 1283 TAGAATGTTT-GGCTTTATATATCTAAGCCTATTTTTTATAATATATATGAGAAGATTTT 1341
Query 1383 GTGTTAACACAAGATATTGG-TAATTTAGTTTTGATCAAACGGGTTCACGTACTTTTTCT 1441
|| |||||||||||| |||| || |||||||| ||||||||| |||||||| ||||||||
Sbjct 1342 GTATTAACACAAGATTTTGGCTA-TTTAGTTTAGATCAAACGTGTTCACGTGCTTTTTCT 1400
Query 1442 TGACTGT 1448
|||||||
Sbjct 1401 TGACTGT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54164328390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5