BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28850.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484655 jgi|Araly1|484655|fgenesh2_kg.5__647__AT3G28850.1 2080 0.0
Ahg947807 jgi|Araly1|947807|scaffold_704036.1 285 6e-76
> Ahg484655 jgi|Araly1|484655|fgenesh2_kg.5__647__AT3G28850.1
Length=1471
Score = 2080 bits (1126), Expect = 0.0
Identities = 1366/1478 (92%), Gaps = 31/1478 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTGTGCGAGTTCGAAGCATCGTAAGCGTTGTCTCCATTGCCGGAGAGGATATTCT 60
||||||||||||||||| || || |||||||||||| |||||||||| |||||||||||
Sbjct 1 ATGGGTTGTGCGAGTTCCAAACACCGTAAGCGTTGTAACCATTGCCGGCGAGGATATTCT 60
Query 61 CCTCCGGTGGATGTACAGAGAAGTCACTCAGTGCATCACGCATCGCAAAACTCTGAAGAT 120
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CCTCCGGTGGATGTACCGAGAAGTCACTCGGTGCATCACGCATCACAAAACTCTGAAGAT 120
Query 121 AGTTGTCACATGGTGGCTCTAAGTTCCTCAAGCCTTGGATCTCTCAAGCTATGTGATTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTTGTCACATGGTGGCTCTAAGTTCCTCAAGCCTTGGATCTCTCAAGCTATGTGATTCT 180
Query 181 TCTTTTGGGCATAATCACAAACACTTGGCGGACTTTAGCGAGAAGCTTGTTTCTGGCGAA 240
||||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||
Sbjct 181 TCTTTTGGGCATAATCACAAACACTTGGCAGACTTCAGTGAGAAGCTTGTTTCTGAAGAA 240
Query 241 TCTGTGAAAACTGGAAATGGGTTTGGTCCGAATGTTGTCAGAGAGAAGTCAGATAAAGAG 300
|||| |||||||||||||||||||||||| ||||| || | ||||||||||||||| |||
Sbjct 241 TCTGGGAAAACTGGAAATGGGTTTGGTCCAAATGTGGTTAAAGAGAAGTCAGATAAGGAG 300
Query 301 AAATCGAATTTGGAATTGCAAGCTAAGCTTATGGAAGCAAAGGTATGGTCAAGTATGATG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAATCGAATTTGGAATTGCAGGCTAAGCTTATGGAAGCAAAGGTATGGTCAAGTATGATG 360
Query 361 AATGAGAAGATACCGAAGATTGTACCGAAAACTCCCATTGTTACGCCTCCTGGTGAGCCA 420
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 361 AATGAGAAGATACCGAAGATTGTACCGAAAACTCCGATTATTACGCCTCCTGGAGAGCCA 420
Query 421 GAAACGATTAATACTTGGGAAATGATGGATGGTCTTGAAGATGTTTTGAGTCCTTTACGA 480
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 421 GAAACGATTAATACTTGGGAAATGATGGATGGGCTTGAAGATGTTTTAAGTCCTTTACGA 480
Query 481 TCACCTAATCATGTTAAGAGTTTCTCGTTTGATGTTGGTCCT-A-----A-T--G---GA 528
||||||||||||||||||||||| ||||||||| ||| || | | | | | ||
Sbjct 481 TCACCTAATCATGTTAAGAGTTTTTCGTTTGATATTGCTCGTAATGGCGATTGCGAACGA 540
Query 529 GGTAAGTCTAATGGTAGTGTTAAGCCGGTATGGCTTCAAATGGAGGAGGAAGAAGAAGGG 588
|||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 GGTAAGTCGAATGGTAATGTGAAGCCGGTTTGGCTTCAAATGGAGGAAGAAGAAGAAGGG 600
Query 589 TTTGAAGATTTTGATCCTGAGATCATTTCTTCGTTTAGGAAATCGCTTCAAGAACTTCCT 648
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 TTTGAAGATTTTGATCCTGAGATCATTTCTTCGTTTAGGAAATCACTTCAAGAACTTCCT 660
Query 649 TCTGATCATCCGTTTCACATTTCGAACCACGATTTCGAATTGAAACCGCGGTTCAATTTC 708
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 661 TCTGATCATCCGTTTCACATTTCGAATCGTGATTTCGAATTGAAACCGCGGTTCAATTTC 720
Query 709 TCTGATGAGGAAAAGGAGG-A-----GGA-G--G-A--ACAAAGTGTTGGTAAAGAGAGA 756
||||||||||||||||||| | ||| | | | | |||||||||||||||||| |
Sbjct 721 TCTGATGAGGAAAAGGAGGAAGCTTTGGATGTAGCAGGAAAAAGTGTTGGTAAAGAGAAA 780
Query 757 GTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACTTATGAAGAAAGCTGTGAT 816
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 781 GTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACATATGAAGAGAGCTGCGAT 840
Query 817 GTTCGGGTTATACTAAAAAGCCTCGGGATTAGAGTGGATGAGCGAGATGTGTCGATGCAT 876
|||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 841 GTTCGGATTATACTAAAGAGCCTCGGAATTAGAGTGGATGAGCGAGATGTATCGATGCAT 900
Query 877 TCGGGTTTCAAAGACGAGTTGAAGGAGCTACTAGGGGAAAAGTTTAACAAAGGTGTTGGG 936
||||||||||||| ||||||||||||| || ||||||| ||||| ||||| || ||||||
Sbjct 901 TCGGGTTTCAAAGGCGAGTTGAAGGAGTTATTAGGGGATAAGTTCAACAATGGCGTTGGG 960
Query 937 ATTACTTTACCTAGAGTTTTCTTGGGAAGGAAGTATATTGGGGGAGCAGAGGAGATTCGG 996
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 ATTACTTTACCTAGAGTTTTCTTGGGAAGGAAGTATATCGGGGGAGCAGAGGAGATTCGG 1020
Query 997 AAGTTAAACGAAGATGGGAAGCTTGAGAAGCTTCTTGGAGGGTGTGAGAGGGTGGAAGAA 1056
||||||||||||||||| ||||| ||||||||||||| ||| || |||||||||||||||
Sbjct 1021 AAGTTAAACGAAGATGGAAAGCTCGAGAAGCTTCTTGAAGGCTGCGAGAGGGTGGAAGAA 1080
Query 1057 AACCAAAATGGTAATGGTCTAGAATGTGAAGCTTGTGGAGATGTAAGGTTTGTGCCGTGT 1116
||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct 1081 AACCAAAATGGTAATGGTCAAGAATGCGAGGCTTGTGGAGATGTAAGGTTTGTGCCGTGT 1140
Query 1117 GAGACATGTTCAGGGAGCTGCAAAGTGTACTatgaatatgaagatgatgatgatgatgat 1176
|||||||||||||||||||||||||||||||||||||||||||| || | || || ||
Sbjct 1141 GAGACATGTTCAGGGAGCTGCAAAGTGTACTATGAATATGAAGACGA--A-GACGACGAC 1197
Query 1177 gatgaaggtgatgatgatgaAAGTGTTAAGGAAGAAAGAGAGTATGGGTTTCAAACATGT 1236
|| |||| || |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1198 GAAGAAGAAGAAGATGATGAAAGTGTAAAGGAAGAACGAGAGTATGGGTTTCAAACATGT 1257
Query 1237 CCTGATTGTAATGAGAATGGTCTCATTAGATGTCCTGTTTGTTGTGATTAGTTGTTTGAA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CCTGATTGTAATGAGAATGGTCTCATTAGATGTCCTGTTTGTTGTGATTAGTTGTTTGAA 1317
Query 1297 CATACACACAAGAAAAGGGAACCTTAAAATTGTTCtttttttttGTTTTGTTTACTAAAT 1356
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1318 CATACACACAAGAAAAGGGAACCTTAAA-TTGTTCTTTTTT---GTTTTGTTTACTAAAG 1373
Query 1357 TTGAGTTATGAGTGCTTGAGGGTTTTATTGCCTCTTAAGTTTTTGTTGTACATAAAGAGG 1416
||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1374 TTGAGTTATGAGTACTTGAGGGTTTTATTGCCTCTAAAGATTTTGTTGTACATAAAGAGG 1433
Query 1417 TCTTTGATTGTGAAAGTGTAAAATTGAAACTAGGAAGT 1454
| ||||||||||||||||||||||||||| ||| ||||
Sbjct 1434 TTTTTGATTGTGAAAGTGTAAAATTGAAATTAGTAAGT 1471
> Ahg947807 jgi|Araly1|947807|scaffold_704036.1
Length=1295
Score = 285 bits (154), Expect = 6e-76
Identities = 349/444 (79%), Gaps = 10/444 (2%)
Strand=Plus/Plus
Query 745 GGTAAAGAGAGAGTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACTTATGAA 804
|||||||| | ||||| ||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 760 GGTAAAGAAAAAGTGAGACTTTACTTCACAAGCCTTAGAGGTATAAGGAAGACATATGAA 819
Query 805 GAAAGCTGTGATGTTCGGGTTATACTAAAAAGCCTCGGGATT-AGAGTGGATGAGCGAGA 863
|| |||| || | ||| | ||||| |||||| | || ||| || | |||||||| ||
Sbjct 820 GACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTCGGA-TCGATGAGCGCGA 878
Query 864 TGTGTCGATGCATTCGGGTTTCAAAGACGAGTTGAAGGAGCTACTAGG-GGAAAAGTTTA 922
||| || ||||||||||| |||||||| ||| ||||| ||||| | || |||||| ||||
Sbjct 879 TGTATCAATGCATTCGGGATTCAAAGATGAGCTGAAGAAGCTA-TTGGAGGAAAAATTTA 937
Query 923 ACAAAGGTGTTGGGATTACTTTACCTAGAGTTTTCTT-GGGAAGGAAGTATATTGGGGGA 981
|||| || ||||| || || | |||||||||||||| ||||| |||||| |||| |||
Sbjct 938 ACAATGGCGTTGGAATAACACTGCCTAGAGTTTTCTTGGGGAA-CAAGTATCTTGGCGGA 996
Query 982 GCAGAGGAGATTCGGAAGTTAAACGAAGATGGGA-AGCTTGAGAAGCTTCTTGGAGGGTG 1040
| ||||||||| |||||| || ||| |||||| | ||||| ||||| | || ||
Sbjct 997 GTGGAGGAGATTAAGAAGTTGAATGAAAATGGGACA-CTTGAAAAGCTGATAAAAGACTG 1055
Query 1041 TGAGAGGGTGGAAGAAAACCAAAATGGTAATGGTCTA-GAATGTGAAGCTTGTGGAGATG 1099
|| | ||| ||||| | || ||| |||| | |||||||| |||||||||||||
Sbjct 1056 CGAAATGGTTGAAGATGGCTTAACGGGTTTTGGT-AACGAATGTGAGGCTTGTGGAGATG 1114
Query 1100 TAAGGTTTGTGCCGTGTGAGACATGTTCAGGGAGCTGCAAAGTGTACTatgaatatgaag 1159
| |||||||||||||||||||||||||||| ||||||||| | ||| ||||| ||||
Sbjct 1115 TTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAAATTTACCATGAAGGCGAAG 1174
Query 1160 atgatgatgatgatgatgatgaag 1183
| || || || || || || ||||
Sbjct 1175 AAGAAGAAGAAGAAGAAGAAGAAG 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5