BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28857.1

Length=739
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936680 jgi|Araly1|936680|scaffold_500871.1                        529    1e-149


> Ahg936680 jgi|Araly1|936680|scaffold_500871.1
Length=319

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 307/317 (97%), Gaps = 2/317 (1%)
 Strand=Plus/Plus

Query  295  AAAGTAAAAACAAGAAAATGTCTAACAGAAGATCAAGACAAACTTCGAA-TGCTTCGAGG  353
            |||||| |||||||||||||||||||||||||||||||||| |||| || |||||| || 
Sbjct  4    AAAGTAGAAACAAGAAAATGTCTAACAGAAGATCAAGACAATCTTC-AAGTGCTTCAAGA  62

Query  354  ATCTCCGATGACCAGATGATCGACCTCGTTAGTAAGCTCCGTCAGTTTTTGCCGGAGATT  413
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   ATCTCCGATGATCAGATGATCGACCTCGTTAGTAAGCTCCGTCAGTTTTTGCCGGAGATT  122

Query  414  CACGAACGGCGTCGTTCTGATAAGGTGTCAGCATCAAAGGTACTACAAGAGACATGCAAC  473
            || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  123  CAAGAACGGCGTCGTTCTGATAAGGTGTCAGCATCGAAGGTACTACAAGAGACATGTAAC  182

Query  474  TACATAAGAAAATTGCATAGAGAAGTTGACAATCTCAGTGATCGTTTGTCGCAGCTTCTT  533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  TACATAAGAAAATTGCATAGAGAAGTTGACAATCTCAGTGATCGTTTGTCGCAGCTTCTT  242

Query  534  GACTCTGTTGATGAAGATAGCCCTGAAGCTGCCGTGATTAGAAGCTTACTCATGTAACCT  593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GACTCTGTTGATGAAGATAGCCCTGAAGCTGCCGTGATTAGAAGCTTACTCATGTAACCT  302

Query  594  TCCaatattttttatta  610
            |||||||||||||||||
Sbjct  303  TCCAATATTTTTTATTA  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27219762738


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5