BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28880.1
Length=2498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484658 jgi|Araly1|484658|fgenesh2_kg.5__650__AT3G28880.1 2710 0.0
> Ahg484658 jgi|Araly1|484658|fgenesh2_kg.5__650__AT3G28880.1
Length=2532
Score = 2710 bits (1467), Expect = 0.0
Identities = 1791/1946 (92%), Gaps = 28/1946 (1%)
Strand=Plus/Plus
Query 547 AGAC-TGATCGTTTTGCTTGGTGACAAGGACTTGACGGTTGTGAAACTACTCGCTGAGAA 605
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 576 AGACTTGATCGTTTTGCTTGGTGACAAGGACTTGACGGTTGTGAAACTACTTGCTGAGAA 635
Query 606 GACAAAGGAAGTGGACGTTGTGGCTTATGCATATGCCAAGGCTGGTGAGATAGTTTCGTT 665
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 636 GACAAAGGAAGTGGACGCTGTGGCTTTTGCATATGCCAAGGCTGGTGAGATAGTTTCTTT 695
Query 666 GACTGCATTGTTGATTGTAGCAAGTGGGAAGATCAGAGAGGCAACTGTGGCATTACGGga 725
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 696 GACTGCATTGTTGATTGTAGCAAGTGAGAAGATCAGAGAGGCAACTGTAGCATTAC---- 751
Query 726 tgatgatgatgatgatTCTGTGGCAAAACGGGAGA-GAAAGACGATCTATGAGGCAGTTA 784
| ||||||||||||||||||| |||| | | | | || |||||||||||||| ||||
Sbjct 752 -G-TGATGATGATGATTCTGTGCCAAAGTGTAAAAGGGAA-ACGATCTATGAGGCTGTTA 808
Query 785 TTCAAGAGGCGTTGCGTAGTAACAGCTTGACGCAAAGTGTATGCAGTGAGAAAAGAATGG 844
||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 809 TTCAAGAAGCGTTGCGTAGTAACAGCTCGACGCAAAGTGTATGCAGCGAGAAAAGAATGG 868
Query 845 TTCTGCTTAGAGAGATTGAGCTTCTTCAGCTCTTTGGTGCTGCAGTTTTTAGTGAATCTG 904
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TTTTTCTTAGAGAGATTGAGCTTCTTCAGCTCTTTGGTGCTGCAGTTTTTAGTGAATCTG 928
Query 905 TGGATAAGCAAACTTCACCACTTATCTCCATTGTGCAGGCAGGAGATGAAGCTGTTCTTG 964
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 929 TGGATAAGCAAACTTCACCACTTATCTCCATTGTACAGGCAGGAGATGAAGCTGTTCTTG 988
Query 965 AGCTGTTTATAAACACCAACTTCGATGTCAACGAGAAAA-ATATAGAAGGGAATACTGTT 1023
|||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||
Sbjct 989 AGCTGTTTATAAACACCAACTTAGATGTCAACGA-AAAAGATGCAGAAGGGAATACTGTT 1047
Query 1024 CTTCAATGTAGCCTGAAAGGATCGTCTGTGCCACATAACCAGCAAACCAGAATCATGAAC 1083
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1048 CTTCAATGTAGCCTGAAGGGATCGTCTGTGCCACATAAGCAGCAAACCAGAATCATGAGC 1107
Query 1084 CTACTTATTGCACACGGTGCTCGAGTTAACCAAAAGAACAAGTTGGGTTTATCTGCAGTT 1143
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1108 CTACTTATTGCACACGGTGCCCGAGTTAACCAAAGGAACAAGTTGGGTTTATCTGCAGTA 1167
Query 1144 CACTTTGCTGCTGCAAATGGCAATTTATCTACACTTGAGATTCTACTAGCGGCCAACCCT 1203
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1168 CACTTTGCTGCTGCAAATGGCAATTTATCTGCACTTGAGATTCTACTAGCGGCCAACCCT 1227
Query 1204 GACTTGGTTAACATGAAGACGGTAATCAAAGAGACGCCACTATTCTTCGCTGTGAAGAAT 1263
|| || ||||| | ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1228 GAGTTAGTTAATGTCAAGACAGTAATCAAAGAGACGCCACTATTCTTCGCAGTGAAGAAT 1287
Query 1264 AATCATCTTGACTGCGTGGAGCTTCTTCTTCGATGTGGTGCAATTACGGAGATTCATAAC 1323
|| |||||||| || || ||||| ||||||||||||||||||| || |||||||||||
Sbjct 1288 AACCATCTTGAGTGTGTTGAGCTGCTTCTTCGATGTGGTGCAAGTATAGAGATTCATAAT 1347
Query 1324 CTACGCAAAGAAACAGAACTTGCACAGTCACAAAGTGCAGCAGTTTCACCAAATGCA-AG 1382
||||||||||||||||||||||| ||| ||||||||||||||||| || || | ||| |
Sbjct 1348 CTACGCAAAGAAACAGAACTTGCCCAGCCACAAAGTGCAGCAGTTCCAACAGACGCAGA- 1406
Query 1383 TGATGAGGAAACTCTTGGATTTCTCGGAGATTCTGTTCCAACATGGCTCAAAACATTTGT 1442
|||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||
Sbjct 1407 TGATGAGGAAACTCTTGGATTTCTCGGAAATTCCGTTCCACCATGGCTCAAAAGTTTTGT 1466
Query 1443 AACCTGGCTTCCTCTGTACCTCCGAGATACATCAGCGAACTGGAAAGGGGCTGGATATCC 1502
|| ||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 1467 AAACTGGCTTCCTCGGTATCTTCGAGATACATCAGCGAACTGGAGAGGGGCTGGATATCC 1526
Query 1503 CCTGTCATCCTTCAAAGCCGATTTTCGTGCTGTTTTTGGAATGGATCTCGATCACACCTC 1562
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1527 CCTGTCATCCCTCAAAGCCGATTTCCGTGCTGTTTTTGGAATGGATCTCGATCACGCCTC 1586
Query 1563 TCTTGATTTCCCTAAGCACATCGACTTTGTCAAATACTTTCCAAGACTCTGTCAAATGAA 1622
||||| |||||| |||| ||||||||| ||||||| ||||||| |||||||||||||||
Sbjct 1587 TCTTGGTTTCCCCAAGCTCATCGACTTCATCAAATATTTTCCAAAACTCTGTCAAATGAA 1646
Query 1623 AGTCGTCCCCATAGGTAAACTTGGAGCTGCAACACACTGGGTCATGCTACCCACCAAATC 1682
||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 1647 AGTCGTCCCCATAGGTAAAATTGGAGCTGCAACACACTGGGTGATGTTACCCACCAAATC 1706
Query 1683 TAAGTGTTCTCAGCTCAAAGAAAGACCTCCTGAGCCACTCATTATCACTAAGAATGACTC 1742
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1707 CAAGTGTTCTCAGCTCAAAGGAAGACCTCCTGAGCCACTCATTATCAGTAAGAATGACTC 1766
Query 1743 TGTTGCTTCTCCC-AGCAAACCAAAAGCCTTATCAGTTCCTCCAGATTTTAAATTCATAC 1801
||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1767 TGTTGCTTCTCCCGA-CAAACCAAAAGCCTTATCAGTTCCTCCAGGTTTTAAATTCTTAC 1825
Query 1802 AAGAAGCACATGACTCTAAAACCTTCAAAGCTTCACCACAACCAAAAGCTCAACCTCCTC 1861
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1826 AAGAAGCACATGACTCTAAAACCTTCAAAGCACCACCAGAACCAAAACCTCAACCTCCTC 1885
Query 1862 CTCCCTT-A--ACAGCATCGTACAACAACAACCAACGTCAACTAAAACACCCGGTTCTTG 1918
|||| || | |||||||| | | |||||||||||||||||||||||| ||||| || |
Sbjct 1886 CTCCGTTGACTACAGCATCTT-C--CAACAACCAACGTCAACTAAAACATCCGGTACTAG 1942
Query 1919 AGACACTTACAAAGATCAGAAACAGCACTTCTGTCTTCTTTCTCCGTGAGTTTGACTTTT 1978
|||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 1943 AGACACTTACAAGGATCAGAAACAGCACTTCCGTATTCTTTCTCCGTGAGTTCGACTTCT 2002
Query 1979 ATCAAAGCTATGAGACATGTTTAAAGGAAGGCATGTGTTTCTGGTGCAACAAGAACATGA 2038
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 ACCAAAGCTATGAGACATGTTTAAAGGAAGGCATGTGTTTCTGGTGCAACAAGAACATGC 2062
Query 2039 TTCGATGGGCAAACTTCCCTTGCAGACACAAACTTTGGTGCAGCTCTTGTAAACAACAGA 2098
||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2063 TTCTATGGGCAAACTTCCCATGCCGACACAAACTTTGGTGCAGCTCTTGTAAACAACAGG 2122
Query 2099 TTACTCAATCTACT-TCAGGAGAGAAGATCCTTGAGGAAGACCATCATAAGTGTGTGGTC 2157
||||||||||| || | ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2123 TTACTCAATCTGCTCT-AGGAGAGAAGAGCCTTGAGGAGGACCATCATAAGTGTGTGGTC 2181
Query 2158 TGTGATGCAAAAGTGGAACGTTTCGTCTTGTCTCCACCGTTTGAATCCGGTCACCATAGG 2217
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 2182 TGTGATGCAAAAGTGGAACGTTTCGTCTTATCTCCACCGTTTGAATCAGATCACCATAGG 2241
Query 2218 ATTTTAAGTGATCGCCCTAACAACGCCGAATTAGCCACTTCTTTCCTTCAGTTCCTCAGC 2277
||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 2242 CTTTCAAGTGATCGCCCTAACAACGCAGAATTAGCCACTTCATTCCTTCAATTCCTCAGC 2301
Query 2278 ATAAGGAACTCCATGAACAAGATGATATATCGCGGGATATAGAGAAAGGAACTTACCCCA 2337
|||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| | |
Sbjct 2302 ATAAGGAATTCCATGAACAAGATGATACATCGTGGGATATAGAGAAAGGAACTTACAC-A 2360
Query 2338 ACAACTTCAACTTCGTGTCGTGATAAGTGGATTTTACTAAA-TTCGTAAATACAAAAGAT 2396
|||||||| ||||||||| ||| ||| ||||||||| |||| || ||||||||||| |||
Sbjct 2361 ACAACTTCGACTTCGTGTGGTGGTAATTGGATTTTAATAAACTT-GTAAATACAAACGAT 2419
Query 2397 GATGGAGATGAAAGCTCTTCTTTAACAACATTTAGAGTACATATGGTACATTTTTGAGAT 2456
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||
Sbjct 2420 GATGGAGATGAAAGCTCTTCTTTAACAACATTTAAAGTACATATGGAACATTTC-GCGAT 2478
Query 2457 CCAAACCGGTCTTACAAATTATGGAA 2482
||||||||||| ||| |||||||||
Sbjct 2479 CCAAACCGGTCA-ACATATTATGGAA 2503
Score = 647 bits (350), Expect = 0.0
Identities = 443/487 (91%), Gaps = 10/487 (2%)
Strand=Plus/Plus
Query 65 GGAATC--TGAGTTTCGATTTCACTGAGATGTT-CGACTCCTACTCTCTTTATCCCACCG 121
|||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 57 GGAATCTATGAGTTTCGATTTCACTGAG-TTTTGCGACTCCTACTCTCTTTATCCCACCG 115
Query 122 GAAAACTATCTCCGGTGGTTGATTCGTACGTCACCGCCGAGCTCGACGGCGAAGATATGA 181
||||| ||||||| ||||||||| ||||||| ||||||||||| |||||| || |
Sbjct 116 GAAAAGTATCTCC---GGTTGATTCTTACGTCA---CCGAGCTCGACAACGAAGAGATCA 169
Query 182 GAGACGACTACGCGTTTTTAGAGTCCGGTTTAAAAGACAACAAATCTCAGTTTATCTCTT 241
||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||| |||
Sbjct 170 GAGACAACTACGCGTTTTTAGATTCCGTTTTAAAAGACAACAAATCTGAGTTTATTTCTC 229
Query 242 ACGCAAAACGCATCTTAGTCGGAGAAGACGCTGAATCAGAGAGAATCGAAGATTTAAAGC 301
|||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 230 ACGCTAAACGCATCTTAGTCGGAGAAGACGCAGAATCAGAGAGAATCGAAGCTATAAAGC 289
Query 302 TTCTTACCGCTTGTTGCAGTTACGATTCCATCAACTGTGCTTCGTCAATCATCAACGGCG 361
|||| | ||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 290 TTCTAAGCGCTTGTTGCAGTTACGATTCTATTAACTGTGCTTCGTCAATCATCAACGGTG 349
Query 362 ACGTTGGATCGGTTCCATATATCAACGATATTTGTTCCGATACAGGACTCTCGCTGTTGC 421
|||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||
Sbjct 350 ACGTTGGATCGGTTCCGTATATCAACGATGTATGTTCCGATACAGGACTCTCGCCGTTGC 409
Query 422 ACACAGCGGCTGAGTCTCACGCGCCACTGTGTGTTGAGATGCTTCTGAAACGACGCGCTC 481
|||| |||||||||| | |||||| || ||||||||||||||||||||||||||||||||
Sbjct 410 ACACGGCGGCTGAGTATAACGCGCTACGGTGTGTTGAGATGCTTCTGAAACGACGCGCTC 469
Query 482 GTACTGATATGAGAAGCAAAGACGAACGCGCTTTGATTCCTCTGGAGCTTTCTCTCTCCA 541
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 470 GTACTGATATGAGAAGCAAAGATGAACGCGCTTTGATTCCTCTGGAGCTATCTCTCTCCA 529
Query 542 ATGTCAG 548
||| |||
Sbjct 530 ATGGCAG 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94159085640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5