BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28900.1
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484659 jgi|Araly1|484659|fgenesh2_kg.5__651__AT3G28900.1 691 0.0
Ahg926260 jgi|Araly1|926260|scaffold_201821.1 281 3e-75
> Ahg484659 jgi|Araly1|484659|fgenesh2_kg.5__651__AT3G28900.1
Length=531
Score = 691 bits (374), Expect = 0.0
Identities = 416/435 (96%), Gaps = 7/435 (2%)
Strand=Plus/Plus
Query 1 ATCCCCTTTGGCCGACTCTTACTGACCTCAGAGCTCAGCAAAAATGGTTCAACGTCTTGT 60
||| |||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 ATCTCCTTTGGCCGTCACTTACTGACCTCAGAGCTAAGCGAAAATGGTTCAACGTCTTGT 60
Query 61 TTACCGATCACGTCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACCGATCACGTCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCC 120
Query 121 TGGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGTGCCCTGT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGTGGGAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGTGCCCTGT 180
Query 181 TACTGGCAAGAGAATCCAAGGGATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TACTGGCAAGAGAATCCAAGGGATTCCGCATTTGAGACCTGCTGAGTACAAAAGGTCGAG 240
Query 241 GTTGGCAAGGAACGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGC 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGGCAAGGAATGAGAGGACAGTGAATCGTGCATATGGTGGTGTTCTATCTGGAGTTGC 300
Query 301 TGTTAGGGAGAGG-A--TC---GTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAA 354
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTTAGGGAGAGGCAAGTGATTGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAA 360
Query 355 GAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAAAC 414
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGGTTTTGAAGCTTCAAAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAAAC 420
Query 415 TTTTTGGAGTCTTAT 429
||||||| |||||
Sbjct 421 GTTTTGGAA-CTTAT 434
Score = 93.5 bits (50), Expect = 2e-18
Identities = 100/120 (83%), Gaps = 19/120 (16%)
Strand=Plus/Plus
Query 444 AACTTATTTTGTAGGGATCGATAGACATGAG--TTTTTGTTCACGaaaaaaaGAGGCAAA 501
|||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||
Sbjct 428 AACTTATTTTCTAGGGATCGATAGACATGAGTCTTTTTGTTCACG---AAAAGA-GCAAA 483
Query 502 TGTTTGTTTTTTGATAATTTCTGAGTTCTGTTTTGTTCTCCATTCAGATTTTACTTTCTC 561
|||||| |||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 484 TGTTTG-TTTTTG-----TTC--A-----GTTTTGTTCTCCATTCAGATTTTACTTTCTC 530
> Ahg926260 jgi|Araly1|926260|scaffold_201821.1
Length=498
Score = 281 bits (152), Expect = 3e-75
Identities = 307/380 (81%), Gaps = 18/380 (5%)
Strand=Plus/Plus
Query 37 AGCAAAAATGGTTCAACGTCTTGTTTACCGATCACGTCAC-TCTTACGCCACCAAGTCCA 95
||| |||||||| || |||||||||||||||||||||||| | ||||||||||| || |
Sbjct 17 AGCGAAAATGGTGCAGCGTCTTGTTTACCGATCACGTCACAGC-TACGCCACCAAATCAA 75
Query 96 ACCAACACCGCATCGTCAAAACTCCTGGTGGAAAATTGACTTACCAGACGACGAACAAGA 155
|||| ||||| |||||||||||||| || || |||||||| || ||||| || || ||||
Sbjct 76 ACCAGCACCGGATCGTCAAAACTCCAGGAGGTAAATTGACGTATCAGACCACTAAGAAGA 135
Query 156 GAGCTAGTGGACCTAAGTG-CCCTGTTACTGGCAAGAGAATCCAAGGG-ATTCCGCATTT 213
|||||||||||||||| || ||| ||||| |||||| | || | |||| ||||| || ||
Sbjct 136 GAGCTAGTGGACCTAAATGTCCC-GTTACCGGCAAGCGTATTC-AGGGTATTCCTCACTT 193
Query 214 GAGACC-TGCTGAGTACAAAAGGTCAAGGTTGGCAAGGAACGAG-AGGACAGTGAATCGT 271
||| || | |||||||||| || || | || |||| ||| || ||||| ||||| |||
Sbjct 194 GAGGCCAT-CTGAGTACAAGAGATCGCGTTTATCAAGAAAC-AGAAGGACTGTGAACCGT 251
Query 272 GCATATGGTGGTGTTCTATCTGGAGT-TGCTGTTAGGGAGAGGATC-GTCAGGGCCTT-C 328
|| |||||||| ||| | ||||| | |||||||||||| || ||| || | || || |
Sbjct 252 GCTTATGGTGGGGTTTTGTCTGG-TTCTGCTGTTAGGGAAAGAATCATTC-GTGCTTTCC 309
Query 329 TTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAG-AGAA 387
|| || || || || ||||||||||||||||||||||||||||| ||||| |||| | ||
Sbjct 310 TT-GTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAAAAGGC-AAAGGAAAA 367
Query 388 GACTGCACCAAAGAGTTAGA 407
| ||| || ||||| ||||
Sbjct 368 GGTTGCTCCCAAGAGCTAGA 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22797504366
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5