BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28910.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484660 jgi|Araly1|484660|fgenesh2_kg.5__652__AT3G28910.1 2217 0.0
Ahg937505 jgi|Araly1|937505|scaffold_501696.1 265 9e-70
Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1 121 2e-26
Ahg473608 jgi|Araly1|473608|fgenesh2_kg.1__3562__AT1G34670.1 95.3 1e-18
> Ahg484660 jgi|Araly1|484660|fgenesh2_kg.5__652__AT3G28910.1
Length=1465
Score = 2217 bits (1200), Expect = 0.0
Identities = 1400/1489 (94%), Gaps = 43/1489 (3%)
Strand=Plus/Plus
Query 2 AGAGACCCAAGAGTCCAAGACCAAGAGGGGTCAGCAAATTTCTCTTTCTCCTTTtatata 61
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 1 AGAGACCCAAGAGTCCAAGACCAAGAGGGGTCAGCAAATTTCTCTCTCT-CTTTT-TATA 58
Query 62 tatatataGAAGAAGAAGTGGACATAGACCTTTGTCGCCAAGCTTAACCATTAGATCCAT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TATATATAGAAGAAGAAGTGGACATAGACCTTTGTCGCCAAGCTTAACCATTAGATCCAT 118
Query 122 TTCAGAGCTAAGCGTACTAATTAGTGTACTAAGGGTAGTGTGA--C-TCATTACCACCTA 178
|||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 119 TTCAAAGCTAAGCGTACTAATTAGTGTACTAAGGGTAGTGTGACTCATCATTACCATCTT 178
Query 179 AAGTAGTTTCAATTTTCTTCTATTTTTCTTGGCAAAGAGTTATAGTGGGAAACAAAGGGA 238
|||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 179 AAGTTGTTTCAACTTTCTTCTA-TTTTCTTGGCAAAGAGTTATAGTGGGAAATAAA--GA 235
Query 239 GTGGTTAATAAAGAATTAATTAGTTAATTAAGGGAGTTCAAGATCATAATGGTGAGGCCT 298
| || |||||||| | | |||||| |||| || ||||||||||||||||||
Sbjct 236 GAGGCTAATAAAG-----A--A-TTAATT-----AGTT-AA-ATCATAATGGTGAGGCCT 280
Query 299 CCTTGTTGTGACAAAGGAGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATATCATT 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 281 CCTTGTTGTGACAAAGGAGGAGTGAAGAAAGGGCCTTGGACTCCTGAAGAAGATATCATT 340
Query 359 TTAGTCACTTACATCCAAGAACATGGTCCTGGTAATTGGAGAGCTGTTCCTACCAATACT 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TTAGTTACTTACATCCAAGAACATGGTCCTGGTAATTGGAGAGCTGTTCCTACCAATACT 400
Query 419 GG---GCTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCA 475
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GGTATGTTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCA 460
Query 476 GGAATCAAAAGAGGCAATTTCACAGAACATGAAGAAAAGATGATTGTTCATCTCCAAGCC 535
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 461 GGAATCAAAAGAGGCAATTTCACTGAACATGAAGAAAAGATGATTGTTCATCTTCAAGCC 520
Query 536 CTCTTAGGAAATAGATGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGAC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CTCTTAGGAAATAGATGGGCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGAC 580
Query 596 ATTAAGAACTATTGGAACACTCATTTGAAGAAGAAACTCAACAAAGTCAATCAAGATTCT 655
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 581 ATTAAGAACTATTGGAACACTCATTTGAAGAAGAAACTCAACAAAATTAATCAAGATTCT 640
Query 656 CATCAAGAACTTGACCGTTCCTCGCTCTCATCTTCACCATCGTCTTCTTCTGCTAATTCC 715
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 641 CATCAAGAACTTGACCATTCCTCGCTCTCATCTTCACCATCGTCTTCTTCCGCTAATTCC 700
Query 716 AACTCAAACATCTCAAGAGGCCAATGGGAAAGGCGACTTCAAACCGATATCCACTTGGCG 775
||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 701 AACTCAAACATATCAAGAGGCCAATGGGAGAGACGACTTCAAACCGATATCCACTTGGCG 760
Query 776 AAAAAGGCTCTCTCTGAGGCTTTATCTCCTGCCGTTGCACCAATCATTACATCTACAGTG 835
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 761 AAAAAGGCTCTCTCTGAGGCTTTATCTCCTGCTGTTGCACCAATCATCACATCTACAGTG 820
Query 836 ACAACAACGTCTTCCTCTGCTGAATCAAGACGCTCTACTTCCTCAGCTAGCGGGTTTCTT 895
|||||||| || || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 821 ACAACAACATCCTCTTCAGCTGAATCAAGACGCTCTACTTCCTCAGCTTCCGGGTTTCTT 880
Query 896 AGGACGCAAGAAACATCTACAACTTATGCCTCAAGCACCGAAAATATCGCGAAATTGCTC 955
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 881 AGGACGCAAGAAACATCTACGACTTATGCCTCAAGCACCGAGAATATCGCGAAATTGCTC 940
Query 956 AAAGGGTGGGTGAAAAACTCGCCGAAGACTCAAAACTCCGCGGATCAAATCGCTTCTACA 1015
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 941 AAAGGGTGGGTGAAAAACTCGCCAAAGACTCAAAACTCCGCGGATCAAGTCGCTTCTACA 1000
Query 1016 ------GAGGTAAAAGAAGTGATCAAGAGTGATGATGGGAAGGAGTGTGCAGGGGCATTT 1069
|||||||| |||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 1001 AACTCTGAGGTAAAGGAAGGGATCAAGAGTGATGATAGGAAGGATTGTGCAGGGGCATTT 1060
Query 1070 CAGTCATTTTCTGAGTTTGATCACTCATATCAACAGGCTGGTGTTTCACCTGATCATGAG 1129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1061 CAGTCATTTTCTGAGTTTGATCACTCATATCAACAGGCTGGAGTTTCACCTGATCATGAG 1120
Query 1130 ACCAAACCAGACATAACTGGATGCTGCAGTAACCAAAGTCAATGGTCTTTGTTTGAGAAG 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 ACCAAACCAGACATAACTGGATGCTGCAGTAACCAAAGTCAATGGTCTTTGTTTGAGAAG 1180
Query 1190 TGGTTGTTTGAGGATTCTGGTGGACAGATTGGTGATATTCTATTGGATGAAAACACTAAT 1249
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TGGTTATTTGAGGATTCTGGTGGACAGATTGGTGATATTCTATTGGATGAAAACACTAAT 1240
Query 1250 TTCTTCTGAAGAGTTTGCTTTAATCACATGGTTCTAATTTTAGGATCCTCATCTCTA-t- 1307
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 1241 TTCTTCTGAAGAGTTTGCTT-AATCACATGGTTCTAATTTTAGGATCCTCGTCTCTACTA 1299
Query 1308 ttttttttttGGGTTTTCCAAATTAAC-TCGCTTAGATTATCGTGAGATAAATCAGTAAT 1366
|||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1300 TTTTTTTTTTTT-TTTTCCAAATTAACAT-GCTTAGATTATCGTGAGATAAATCATTAAT 1357
Query 1367 AATTTTATTTATTTTCCCTCTTTAATTTACAATTAATGATGGGGTTGTTTTATATAT--G 1424
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 1358 AATTTTATTTATTTTCCCTCGTTAATT-ACAATTAATGATGGGGTTGTTTTATATATATG 1416
Query 1425 GCCCTGTGAATTCTGAAGGGGCCTGAAA-A-ATGTCCACCCAATGATTT 1471
|||||||||||||||||||||||||| | | |||||| |||||||||||
Sbjct 1417 GCCCTGTGAATTCTGAAGGGGCCTGATATATATGTCCGCCCAATGATTT 1465
> Ahg937505 jgi|Araly1|937505|scaffold_501696.1
Length=1043
Score = 265 bits (143), Expect = 9e-70
Identities = 265/324 (82%), Gaps = 8/324 (2%)
Strand=Plus/Plus
Query 317 GGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATATCATTTTAGTCACTTACATCCAA 376
||||||||||||||||||||||| || || ||||||||||| || || |||||||||||
Sbjct 53 GGAGTGAAGAAAGGGCCATGGACACCAGAGGAAGATATCATCTTGGTTTCTTACATCCAA 112
Query 377 GAACATGGTCCTGGTAATTGGAGAGCTGTTCCTAC-CAATACTGGGCTGCTTAGATGCAG 435
|||||||||||||| || |||||| |||| ||||| | |||| || || ||||| ||
Sbjct 113 GAACATGGTCCTGGAAACTGGAGATCTGTGCCTACTC-ATACAGGTTTGAGGAGATGTAG 171
Query 436 CAAGAGTTGTAGACTT-AGATGGACAAACTAT-TTAAGGCCAGGAATCAAAAGAGGCAAT 493
||| ||||||||| || || ||||| || ||| || | || || || || | || |||
Sbjct 172 CAAAAGTTGTAGA-TTGAGGTGGACTAATTATCTT-CGACCTGGGATTAAGCGTGGAAAT 229
Query 494 TTCACAGAACATGAAGAAAAGATGATTGTTCATCTCCAAGCCCTCTTAGGAAATAGATGG 553
||||| || |||||||| ||||||||| | ||||| ||||| || || || || || |||
Sbjct 230 TTCACCGAGCATGAAGAGAAGATGATTCTCCATCTTCAAGCTCTTTTGGGCAACAGGTGG 289
Query 554 GCTGCAATTGCGTCATATCTTCCACAAAGGACAGACAATGACATTAAGAACTATTGGAAC 613
|| || || || ||||| |||||| |||||||||||||||| || |||||||||||||||
Sbjct 290 GCAGCTATAGCATCATACCTTCCAGAAAGGACAGACAATGATATAAAGAACTATTGGAAC 349
Query 614 ACTCATTTGAAGAAGAAA-CTCAA 636
|||||||||||||| ||| |||||
Sbjct 350 ACTCATTTGAAGAA-AAAGCTCAA 372
> Ahg488379 jgi|Araly1|488379|fgenesh2_kg.6__1513__AT5G15310.1
Length=1310
Score = 121 bits (65), Expect = 2e-26
Identities = 253/339 (75%), Gaps = 32/339 (9%)
Strand=Plus/Plus
Query 305 TGTGACAAA-GGAGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGAT-A-TCA-TTTT 360
||||||||| | || |||||||||| || ||||| || ||||| ||| | | ||||
Sbjct 241 TGTGACAAATTG-GGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATCAGAAACTTTT 299
Query 361 AGTCACTTACATCCAAGAACATGGTCCTGGTAA-TTGGAGAGCTGTT-CCT-ACCAATA- 416
|| |||| || |||| ||||||| ||| || |||| | | || ||| | || |
Sbjct 300 AG---CTTATATTGAAGAGCATGGTCATGG-AAGTTGGCGTTC-ATTGCCTGA-GAA-AG 352
Query 417 CTGGGCTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCAG 476
|||| || | | ||||| | || ||||| ||||| |||||||| ||||| |||| ||
Sbjct 353 CTGGTCTTCATCGATGCGGGAAAAGTTGCAGACTAAGATGGACTAACTACCTAAGACC-T 411
Query 477 GA-ATCAAAAGAGGCAATTTC-ACAGAACATGAAGAA-AAGA-TGATTGTTCATCTCCAA 532
|| |||||||||||||| ||| || || |||||| || | | ||| | || |||||
Sbjct 412 GACATCAAAAGAGGCAAATTCAAC-TTGCAAGAAGAACAA-ACT-ATTATCCAACTCCAT 468
Query 533 GCCCTCTTAGGAAATAGATGGGCTGCAATTGCGTCA-T-ATCTT-CCACAA-AGGACAGA 588
|| || |||||||| |||||| | || ||||| | | | || || || || || |||||
Sbjct 469 GCTCTGTTAGGAAACAGATGGTCAGCGATTGC-T-ACTCAT-TTGCC-TAAGAGAACAGA 524
Query 589 CAATGACATTAAGAACTATTGGAACACTCATTTGAAGAA 627
||| || || |||||||||||||||||||||||||||||
Sbjct 525 CAACGAAATCAAGAACTATTGGAACACTCATTTGAAGAA 563
> Ahg473608 jgi|Araly1|473608|fgenesh2_kg.1__3562__AT1G34670.1
Length=1104
Score = 95.3 bits (51), Expect = 1e-18
Identities = 263/361 (73%), Gaps = 32/361 (9%)
Strand=Plus/Plus
Query 287 ATGGTGAGGCCTCCTTGTTGTGACAAAGGA-GGAGTGAAGAAAGGGCCATGGACTCCTGA 345
|||| |||| | |||||||| ||| || | || | |||||||||||||||||||||||
Sbjct 1 ATGGGGAGGTCGCCTTGTTGCGAC-GAGAATGGTCTAAAGAAAGGGCCATGGACTCCTGA 59
Query 346 AGAAGAT-ATCATTTTAGTCACTTACATCCA-AGAACATGGTCCTGGTAAT-TGGAGAGC 402
||||||| | | ||| | | |||||| || | ||||||||| ||| || ||||||||
Sbjct 60 AGAAGATCAAAAGCTTATTGA-TTACATTCATA-AACATGGTCATGG-AAGCTGGAGAGC 116
Query 403 TGTTCCTACCAATACTGG--GCT--GCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGA 458
| || |||| || | | | | ||| || | |||||||||||||| || ||||
Sbjct 117 CCT-CC--CCAAG-CTCGCAGATTTGAATAGGTGTGGAAAGAGTTGTAGACTGAGGTGGA 172
Query 459 CAAACTATTTAAGGCCAGGA-ATCAAAAGAGGCAA-TTT-CA-CAGAACATGAAGAAAAG 514
|||| ||||| || |||| | |||||||||||||| ||| | | ||| | || | |||
Sbjct 173 CAAATTATTTGAGACCAG-ACATCAAAAGAGGCAAGTTTTCCTCCGAAGAAGA-GCAAAC 230
Query 515 ATGATTGTTCATCTCCAAGCCCT-CTTAGGAAATAGATGGGCTGCAATTGCGTCATATCT 573
| || | |||||||| || | || |||| || |||| | || ||||| | || |
Sbjct 231 A--ATCCTCCATCTCCACTCCATTCTCGGGAA-TAAATGGTCAGCTATTGCCACGCAT-T 286
Query 574 TCCACAAAG--G-ACAGACAATGACATTAAGAACTATTGGAACACTCATTTGAAGAAGAA 630
| || | | | ||||| ||||| || || |||| ||||||||| ||| | ||||||||
Sbjct 287 TGCA-AG-GTCGTACAGATAATGAGATCAAAAACTTTTGGAACACACATCTAAAGAAGAA 344
Query 631 A 631
|
Sbjct 345 A 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5