BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28917.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484661 jgi|Araly1|484661|fgenesh2_kg.5__653__AT3G28917.1 1086 0.0
> Ahg484661 jgi|Araly1|484661|fgenesh2_kg.5__653__AT3G28917.1
Length=771
Score = 1086 bits (588), Expect = 0.0
Identities = 717/777 (92%), Gaps = 18/777 (2%)
Strand=Plus/Plus
Query 4 GAGGTCCTCTTGTAATTGTTTTGATCTTTCACTCCCTAACTATTTCGAGCCGTAGAAATT 63
|||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 1 GAGGTCTTCTTGTAATTGTTTTGATCTTTCAGTCCCTAACTATTTCCAACCGTAGAAATT 60
Query 64 AAAGTAAAAGAACAAAAACTTTATTATACATTTTTCTCTTCCTCTTTAATATATATACAT 123
||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||
Sbjct 61 AAAGTAAAAGAACAAAAAC-TTATTATATATTTTTCTCTTCTTCTTTAATATATAGGCAA 119
Query 124 TATTACAAGTTTAGATTTCATaaaaaaaaGTCAA-GAAGAAGAAAGAGCTGAGACGAGAA 182
||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||||
Sbjct 120 TATTACAAGTTTAGATTTCATAAAAAAAA--CAATCAAGAAGAAGGAGCTAAGAGGAGAA 177
Query 183 TTGAAGTGAGAAAGCATGAGGAAGCGTCAGGTGGTGTTGAGGAGAGCCTCGCCAGAGGAA 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TTGAAGGGAGAAAGCATGAGGAAGCGTCAGGTGGTGTTGAGGAGAGCCTCGCCGGAGGAA 237
Query 243 CCTTCTAGAAGCTCGTCGACGGCTTCGTCTCTGACAGTGAGAACTGTGAGGTACGGAGAA 302
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 238 CCTTCTAGAAGCTCGTCCACGGCTTCGTCTCTGACGGTGAGAACTGTGAGATACGGCGAG 297
Query 303 TGTCAGAAGAACCACGCTGCGGCGGTGGGAGGTTACGCTGTTGACGGCTGCCGTGAGTTC 362
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 298 TGTCAGAAGAACCATGCCGCGGCCGTGGGAGGTTACGCTGTTGACGGCTGCCGTGAGTTT 357
Query 363 ATGGCAAGCCGAGGAGAGGAAGGTACCGTGGCAGCGCTAACGTGCGCCGCCTGTGGCTGC 422
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 358 ATGGCAAGCCGAGGCGAGGAAGGTACCCTGGCAGCACTAACGTGCGCCGCCTGTGGCTGC 417
Query 423 CATCGCAGTTTCCATCGGAGAGAAATAGAAACCGAGGTTGTTTGCGACTGTAATTCACCT 482
|| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 418 CACCGCAGTTTCCATCGAAGAGAAATTGCAACCGAGGTTGTTTGCGACTGTAATTCACCT 477
Query 483 CCTTCTACTGGAAATTAGATAAGAAAAATCTAGAGCTAGCTATGAGTGTGTTTGTGT--- 539
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 CCTTCTACTGGAAATTAGACAAGAAAAATCTAGAGCTAGCTATGAGTGTGTTTGTGTCTT 537
Query 540 -GT-T---ACATATACAGATGATGAAACTGAAAATATTTTATTTGCtttttt-tt-CTTC 592
|| | |||||||||||| | || ||||||||||| ||||||||||||| || ||||
Sbjct 538 TGTGTGTTACATATACAGAT--T-AATCTGAAAATATTATATTTGCTTTTTTATTTCTTC 594
Query 593 TTTAATATGAAAGGCTTGTGTTTCTTTGTGAATTTAAGAAGAAACTATAAGAGATTTATA 652
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 595 TTTAATATTAAGGGCTTGTGTTTCTTTGTGAATTTAAGAAGAAACTATTAGAGATTTATA 654
Query 653 GATTGAAGGTGGTGGAAGCATTGAAAGATTTATAATAATTGGATGCTTTTGGGGTTTGAG 712
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 655 GATTGGAGGTGGTGGAAGCAGTGAAAGATTTATTATAATTGGATGCTTTTGGGGTTTGAG 714
Query 713 AATGTTCAG-AAAAGGTTAGGCTTCTGAAGTGAAATATTAAGATTATTGTTGTTTTT 768
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 715 AATGTTTAGGAAAAGGTTAGGCTTCTGAAGTGAAATATTAAGATTATTGTTTTTTTT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5