BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G28920.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484662 jgi|Araly1|484662|fgenesh2_kg.5__654__AT3G28920.1 1755 0.0
Ahg494014 jgi|Araly1|494014|fgenesh2_kg.7__3447__AT5G39760.1 449 2e-125
Ahg947918 jgi|Araly1|947918|scaffold_704147.1 364 7e-100
> Ahg484662 jgi|Araly1|484662|fgenesh2_kg.5__654__AT3G28920.1
Length=1352
Score = 1755 bits (950), Expect = 0.0
Identities = 1271/1411 (90%), Gaps = 82/1411 (6%)
Strand=Plus/Plus
Query 1 atttattattcacatttattaaca-tttttatatctctccctattaaattattttattct 59
|||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 1 ATTTATTATTCACATTTATTAATATTTTTTATATCTCTCCCTATTAAATTATCTTATTCT 60
Query 60 ctcttaGCAACATTCATCAACCAGAGCAGATTCACTATCATCATCTTATAACACATCTTC 119
|||||||||||||||||||| | ||||||||| | |||||||||||||||||||||
Sbjct 61 CTCTTAGCAACATTCATCAA-C----CAGATTCAC--T-ATCATCTTATAACACATCTTC 112
Query 120 TTCCTCTAAAGTTTATTTTCTTAAA-CTTATTACAAAAAACATGATCTTCAAAAGTTGAt 178
||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||
Sbjct 113 TTCCTCTAAAGTTTATTTTCTTAAACCTTATTAC-AAAAATATGATCTCCAAAAGTTGA- 170
Query 179 ttaatctctttttatccatcttcttcttcatttctcaatatcaaacttttctttttttGT 238
||||||||||||||||||| ||||||||||||||||||| || || |
Sbjct 171 TTAATCTCTTTTTATCCATTTTCTTCTTCATTTCTCAATCTC-AA--------------T 215
Query 239 AAGCTTAACATAAACCCTAATATTTTCTTGAtttttttCAAGAAAAT-AAAAAC---A-T 293
||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 216 AAGTTTAACATAAACCCTAATATTTTCTTGATTTTTTTCAAGAAAATAAAAAACATAAGT 275
Query 294 -A-A-AGATGCTTGAAGTTAGATCAATGGATATGACTCCAAAATCACCAGAACCCGAATC 350
| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 276 CATAGAGATGCTTGAAGTTAGATCAATCGATATGACTCCTAAATCACCAGAACCCGAATC 335
Query 351 CGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CGAAACTCCGACCCGGATCCAACCAGCTAAACCAATCTCTTTCAGTAACGGAATCATCAA 395
Query 411 ACGccaccaccaccaccaccacAACAACAACAAAGTCACTTACAAAGAATGTCTCAAGAA 470
|||||||||||||||||||||||||| | | || || ||||||||||||||||||||
Sbjct 396 ACGCCACCACCACCACCACCACAACA-C--C---GTTACATACAAAGAATGTCTCAAGAA 449
Query 471 CCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTTATGCCGTCTCC 530
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 450 CCACGCGGCGGCGATTGGTGGTCACGCGCTTGACGGTTGCGGCGAATTCATGCCGTCTCC 509
Query 531 TTCGTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAA 590
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TTCTTCAACACCTTCCGATCCAACTTCTCTCAAGTGTGCAGCTTGTGGTTGTCACCGTAA 569
Query 591 CTTCCACCGCCGTGAAACTGACGATTCCTCCGCCGTTCCACCACCGTCTCTTCTTCCATC 650
||| |||||||||||| ||||||| |||||| || |||||||||||||||||||||||||
Sbjct 570 CTTTCACCGCCGTGAACCTGACGACTCCTCCTCCCTTCCACCACCGTCTCTTCTTCCATC 629
Query 651 TTCAACAACAACCGCCGCAATTGAGTATCAGCCTCATCACCGTCATCATCCTCCTCCTCC 710
|||||| |||||| |||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 630 TTCAACCACAACCACCGCAATTGAGTATCAACCTCATCACCGTCACCACCCTCCTCCTCC 689
Query 711 GCTAGCTCCTCCG-TTACCACGTAGTCCTAATTCATCTTCTCCGCCGCCTATCTCTTCCT 769
|||||||||||| || || |||||||||| ||||||||||||||| |||||||| ||||
Sbjct 690 GCTAGCTCCTCCTCTT-CCTCGTAGTCCTAGTTCATCTTCTCCGCCACCTATCTCCTCCT 748
Query 770 CCTACATGCTTTTAGCTCTCTCCGGTAATAATAAAACCGCACCGTTCTCAGATCTAAACT 829
|||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 749 CCTACATGCTTTTAGCTCTCTCTGGTAACAATAAAACCACACCGTTCTCAGATCTAAACT 808
Query 830 TCGCCGCCGCGGCTAACCATCTCTCCGCCACGCCTGGCTCGA-GGAAGCGATTCAGGACG 888
||||||||||||||||| ||||||||||| |||||||||| | |||| |||||||||||
Sbjct 809 TCGCCGCCGCGGCTAACAATCTCTCCGCCGCGCCTGGCTC-ACGGAAACGATTCAGGACA 867
Query 889 AAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAG 948
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 868 AAGTTTAGCTCAAATCAGAAAGAGAAGATGCATGAATTCGCCGCTCGAATCGGTTGGAAG 927
Query 949 ATTCAGAAACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAA 1008
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 928 ATTCAGAAACGCGACGAGGACGAGGTTCGTGATTTTTGCCGTGAGATCGGAGTTGATAAA 987
Query 1009 GGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGA 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGTGTTCTCAAAGTTTGGATGCATAATAACAAAAACTCCTTCAAATTCTCCGGCGGAGGT 1047
Query 1069 GCAACCACCGTGCAGAGAAACGATAACGGTATCGGCGGCGAGAACAGTAACGATGATGGA 1128
|| | |||| | || ||||||||||||||||||||||| |||||||||||||
Sbjct 1048 GC--C-ACCG--C-------CGTTAACGGTATCGGCGGCGAGAACAATAACGATGATGGA 1095
Query 1129 GTTCGCGGTTTA-GC--TA-A-CGA-CGGTGACGGTGGTGGTGG-GAGATTTGAGAGTGA 1181
||||||||| | || | | | | | |||||||||||||| | | | ||| ||
Sbjct 1096 GTTCGCGGTGGAAGCGGTTTAGCTAACAAAGACGGTGGTGGTGGTG-G-TGGGAG-GT-- 1150
Query 1182 TAGTGGAGGAGCTGATGGTGGCGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAG 1241
| || || || |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1151 T--TG-AG-AG-TGATAGTGGAGGAAACGTAAACGCCTCGTCGTCTTCGTCGTGAAGAAG 1205
Query 1242 AAAACATCATGTCGTTTTGCAGGGAAAGAGTTATAATAATGGAAGCTTAAGCTTT-GTTT 1300
||||||| |||||||||||||||||||||| | | ||||||||||||||||||| | ||
Sbjct 1206 GAAACATCTTGTCGTTTTGCAGGGAAAGAGT-A-A-TAATGGAAGCTTAAGCTTTTGGTT 1262
Query 1301 TTAGCTTT-AGATCATAGAGAGTAAGCACTGGTATTATTATCGTTAATACGTTTT-ATTA 1358
| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1263 T-AGCTTTTAGATCATAGAGAGTAAGCACTGGTATTACTATCGTTAATACGTTTTTATTA 1321
Query 1359 ATATTAATTAAA-CTCTTTTAGCTCTTTTTT 1388
|||||||||||| |||||||||||| |||||
Sbjct 1322 ATATTAATTAAAACTCTTTTAGCTCCTTTTT 1352
> Ahg494014 jgi|Araly1|494014|fgenesh2_kg.7__3447__AT5G39760.1
Length=1306
Score = 449 bits (243), Expect = 2e-125
Identities = 590/749 (79%), Gaps = 58/749 (8%)
Strand=Plus/Plus
Query 325 ACTCCAAAATCACCAGAACCCGAATCCGAAACTCCGACCCGGATCCAACCAGCTAAACCA 384
||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 115 ACTCCTAAATCACCCGAACCCGAATCCGAAACTCCGACCCGGATCCAACCGGCGAAACCC 174
Query 385 ATCT-CTTTCAGTAACGGAATCATCAAACGccaccaccaccaccaccacAACAACAACAA 443
|| | |||| || ||||| ||||||||||||||||||||||| || | | | |
Sbjct 175 ATTTCCTTT-AGCAACGGCATCATCAAACGCCACCACCACCA--TCCTC-TC--C-TC-- 225
Query 444 AGTCACTTACAAAGAATGTCTCAAGAACCACGCGGCGGCGATT-GGTGGTCACGCGCTTG 502
| |||||||||||||||||||| |||||||||||| || || |||||||| || || |
Sbjct 226 -TTTACTTACAAAGAATGTCTCAAAAACCACGCGGCGTCG-TTAGGTGGTCATGCTCTCG 283
Query 503 ACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAA-CACCTTCCGATCCAACTTCTCTC 561
|||||||||||||||| ||||||||||| ||||||| | || ||||||||||||||||||
Sbjct 284 ACGGTTGCGGCGAATTCATGCCGTCTCCGTCGTCAATCTCC-TCCGATCCAACTTCTCTC 342
Query 562 AAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCTCC 621
|| ||||| |||||||| || |||||||| |||||||||||||| | ||| | | |
Sbjct 343 AAATGTGCTGCTTGTGGCTGCCACCGTAATTTCCACCGCCGTGATCCAGACAACAACAAC 402
Query 622 GCCGTTCCA-CCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATCA 680
| | | || || || || | ||| || || | | ||||||| | ||||||||
Sbjct 403 GAC--T-CATCC-CC-AATC--CATCC-TCCTC--CTTCTACCGCCG---TAGAGTATCA 449
Query 681 GCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCGTTACCACGTAGTCCTAA 740
||||| |||||||||||||| || || || ||| |||| || ||||||||||||||
Sbjct 450 ACCTCACCACCGTCATCATCCACCACCACCACTACCTCCACCACCGCCACGTAGTCCTAA 509
Query 741 TTCAT-CTTCTCCGCCGCCTATCTCTTCCTCCTACATGCTTTTAGCTCTCTCCGG---TA 796
|| | ||||||| || || ||||||||||| |||||||| ||| |||||||||| ||
Sbjct 510 CTC-TGCTTCTCCTCCACCAATCTCTTCCTCTTACATGCTCTTATCTCTCTCCGGAACTA 568
Query 797 ATAATAA-AAC--C-GC--A-C--CGTTCTCAGATCTAAACTTCGCC-GCCGCGGCTAAC 846
|||| || ||| | | | | | ||||| ||||| || ||| || || | | |||
Sbjct 569 ATAACAACAACAACAACTTAGCTTCTTTCTCCGATCTCAATTTCTCCGGCGGAAAC-AAC 627
Query 847 CATC-TCTCCGCC-AC--GC-C-T---GGCTCGAGGAAGCGATTCAGGACGAAGTTTAGC 897
|| | | || || || | | | || || | || ||||| | || || || ||
Sbjct 628 CACCACCACCACCAACATACTCTTCACGGTTCTCGTAAAAGATTCCGAACAAAATTCAG- 686
Query 898 TCA-AATCAGAAAGAGAAGATGCATGAATTCGCCGATCGAATCGGTTGGAAGATTCAGAA 956
||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 687 TCAGTTTCAGAAAGAGAAGATGCATGAATTCGCCGAACGACTTGGTTGGAAGATGCAGAA 746
Query 957 ACGTGACGAAGACGAAGTTCGTGATTTTTGCCGTG-AGATCGGAGTTGATAAAGGTGTTC 1015
||||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 747 ACGTGACGAAGACGATGTTCGTGATTTTTGCCG-GCAGATCGGAGTTGATAAAAGTGTTC 805
Query 1016 TCAAAGTTTGGATGCATAATAACAAAAAC 1044
| ||||||||||||||||| |||||||||
Sbjct 806 TTAAAGTTTGGATGCATAACAACAAAAAC 834
> Ahg947918 jgi|Araly1|947918|scaffold_704147.1
Length=445
Score = 364 bits (197), Expect = 7e-100
Identities = 236/255 (93%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 500 TTGACGGTTGCGGCGAATTTATGCCGTCTCCTTCGTCAACACCTTCCGATCCAACTTCTC 559
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TTGACGGTTGCGGAGAATTCATGCCGTCTCCTTCTTCAACACCTTCCGATCCAACTTCTC 60
Query 560 TCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAAACTGACGATTCCT 619
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCAAGTGTGCAGCTTGTGGTTGTCACCGTAACTTCCACCGCCGTGAACCTGACGATTCCT 120
Query 620 CCGCCGTTCCACCACCGTCTCTTCTTCCATCTTCAACAACAACCGCCGCAATTGAGTATC 679
|| | |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 121 CCTCTGTTCCACCACCGTCTCTTCTTCCATCTTCATCCACAACCGCCACAATTGAGTATC 180
Query 680 AGCCTCATCACCGTCATCATCCTCCTCCTCCGCTAGCTCCTCCG-TTACCACGTAGTCCT 738
| |||||||||||||| || ||||||||| |||||||||||| || || |||||||||
Sbjct 181 AACCTCATCACCGTCACCACCCTCCTCCTTTGCTAGCTCCTCCTCTT-CCTCGTAGTCCT 239
Query 739 AATTCATCTTCTCCG 753
| |||||||||||||
Sbjct 240 AGTTCATCTTCTCCG 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5