BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G28923.1

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906028 jgi|Araly1|906028|Al_scaffold_0003_3156                   95.3    4e-19


> Ahg906028 jgi|Araly1|906028|Al_scaffold_0003_3156
Length=1128

 Score = 95.3 bits (51),  Expect = 4e-19
 Identities = 70/79 (89%), Gaps = 1/79 (1%)
 Strand=Plus/Plus

Query  172  AAATTAAAAGTTTGAAGAAGAACAACATTATGATCCCGTCTCCAAGGAGAGGTGGTTACC  231
            ||| |||||| | ||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct  596  AAAGTAAAAGATGGAAGAAGAACGGCATTATGATCCCGTCTCCAAGGAGAGGTGGTTACC  655

Query  232  GAAACTTCTAC-ACCTTTT  249
            ||| ||||| | | |||||
Sbjct  656  GAAGCTTCTTCCATCTTTT  674



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18429149487


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5